Propionibacterium avidum infection following breast reduction: high morbidity from a low-virulence pathogen

Propionibacterium avidum is a common inhabitant of sebaceous glands, traditionally considered to be of low virulence and generally found on implanted foreign material. We report a rare case of P. avidum breast abscess, causing severe morbidity following breast reduction surgery. A 36-year-old woman presented with a non-painful wound discharge 3 weeks postoperatively, and was treated conservatively. She was readmitted 7 weeks postoperatively with a red and tender breast. A purulent discharging abscess was drained under ultrasound guidance. A 2-week intravenous course of amoxicillin-clavulanic acid, followed by oral replacement for a month resulted effective. Serial ultrasound imaging was useful in treatment decision-making. The infective potential of P. avidum may be underappreciated. Proximity of sutures to the axilla, tobacco smoking and the potential for resorbable sutures to host bacteria may predispose to infection, and should raise the clinician's awareness

Environmental fluctuations accelerate molecular evolution of thermal tolerance in a marine diatom

This is the final version of the article. Available from Springer Nature via the DOI in this recordThe publisher correction to this article is in ORE at: http://hdl.handle.net/10871/34487Diatoms contribute roughly 20% of global primary production, but the factors determining their ability to adapt to global warming are unknown. Here we quantify the capacity for adaptation to warming in the marine diatom Thalassiosira pseudonana. We find that evolutionary rescue under severe (32 °C) warming is slow, but adaptation to more realistic scenarios where temperature increases are moderate (26 °C) or fluctuate between benign and severe conditions is rapid and linked to phenotypic changes in metabolic traits and elemental composition. Whole-genome re-sequencing identifies genetic divergence among populations selected in the different warming regimes and between the evolved and ancestral lineages. Consistent with the phenotypic changes, the most rapidly evolving genes are associated with transcriptional regulation, cellular responses to oxidative stress and redox homeostasis. These results demonstrate that the evolution of thermal tolerance in marine diatoms can be rapid, particularly in fluctuating environments, and is underpinned by major genomic and phenotypic change.This study was funded by a Leverhulme Trust research grant (RPG-2013-335). Whole genome re-sequencing was carried out at Exeter Sequencing Service and Computational core facilities at the University of Exeter, where Dr. Karen Moore, Dr. Audrey Farbos, Paul O’Neill, and Dr. Konrad Paszkiewicz lead the handling of the samples. Exeter Squencing Services are supported by Medical Research Council Clinical Infrastructure award (MR/M008924/1), Wellcome Trust Institutional Strategic Support Fund (WT097835MF), Wellcome Trust Multi User Equipment Award (WT101650MA), and BBSRC LOLA award (BB/K003240/1)

Kinetic theory of point vortex systems from the Bogoliubov-Born-Green-Kirkwood-Yvon hierarchy

Kinetic equations are derived from the Bogoliubov-Born-Green-Kirkwood-Yvon (BBGKY) hierarchy for point vortex systems in an infinite plane. As the level of approximation for the Landau equation, the collision term of the kinetic equation derived coincides with that by Chavanis ({\it Phys. Rev. E} {\bf 64}, 026309 (2001)). Furthermore, we derive a kinetic equation corresponding to the Balescu-Lenard equation for plasmas, using the theory of the Fredholm integral equation. For large $N$, this kinetic equation is reduced to the Landau equation above.Comment: 10 pages, No figures. To be published in Physical Review E, 76-

Publisher Correction: Environmental fluctuations accelerate molecular evolution of thermal tolerance in a marine diatom

The article for which this is the publisher correction is in ORE at: http://hdl.handle.net/10871/32652The PDF version of this Article was updated shortly after publication following an error which resulted in the Φ symbol being omitted from the left hand side of equation 8. The HTML version was correct from the time of publication

Statistical approach to dislocation dynamics: From dislocation correlations to a multiple-slip continuum plasticity theory

Due to recent successes of a statistical-based nonlocal continuum crystal plasticity theory for single-glide in explaining various aspects such as dislocation patterning and size-dependent plasticity, several attempts have been made to extend the theory to describe crystals with multiple slip systems using ad-hoc assumptions. We present here a mesoscale continuum theory of plasticity for multiple slip systems of parallel edge dislocations. We begin by constructing the Bogolyubov-Born-Green-Yvon-Kirkwood (BBGYK) integral equations relating different orders of dislocation correlation functions in a grand canonical ensemble. Approximate pair correlation functions are obtained for single-slip systems with two types of dislocations and, subsequently, for general multiple-slip systems of both charges. The effect of the correlations manifests itself in the form of an entropic force in addition to the external stress and the self-consistent internal stress. Comparisons with a previous multiple-slip theory based on phenomenological considerations shall be discussed.Comment: 12 pages, 3 figure

A Very Low Resource Language Speech Corpus for Computational Language Documentation Experiments

Most speech and language technologies are trained with massive amounts of speech and text information. However, most of the world languages do not have such resources or stable orthography. Systems constructed under these almost zero resource conditions are not only promising for speech technology but also for computational language documentation. The goal of computational language documentation is to help field linguists to (semi-)automatically analyze and annotate audio recordings of endangered and unwritten languages. Example tasks are automatic phoneme discovery or lexicon discovery from the speech signal. This paper presents a speech corpus collected during a realistic language documentation process. It is made up of 5k speech utterances in Mboshi (Bantu C25) aligned to French text translations. Speech transcriptions are also made available: they correspond to a non-standard graphemic form close to the language phonology. We present how the data was collected, cleaned and processed and we illustrate its use through a zero-resource task: spoken term discovery. The dataset is made available to the community for reproducible computational language documentation experiments and their evaluation.Comment: accepted to LREC 201

Interacting Constituents in Cosmology

Universe evolution, as described by Friedmann's equations, is determined by source terms fixed by the choice of pressure $\times$ energy-density equations of state $p(\rho)$. The usual approach in Cosmology considers equations of state accounting only for kinematic terms, ignoring the contribution from the interactions between the particles constituting the source fluid. In this work the importance of these neglected terms is emphasized. A systematic method, based on the Statistical Mechanics of real fluids, is proposed to include them. A toy-model is presented which shows how such interaction terms can engender significant cosmological effects.Comment: 24 pages, 6 figures. It includes results presented in "Cosmic Acceleration from Elementary Interactions" [arXiv:gr-qc/0512135]. Citations added in v.

Electro-purification studies and first measurement of relative permittivity of TMBi

A new type of detector for positron-emission tomography (PET) has been proposed recently, using a heavy organo-metallic liquid - TriMethyl Bismuth (TMBi) - as target material. TMBi is a transparent liquid with the high Z element Bismuth contributing 82% of its mass. 511keV annihilation photons are converted efficiently into photo-electrons within the detector material producing both Cherenkov light and free charge carriers in the liquid. While the optical component enables a fast timing, a charge readout using a segmented anode can provide an accurate position reconstruction and energy determination. The charge measurement requires a high level of purification, as any electronegative contaminants cause signal degradation. In addition to the purity requirements, the reactive nature of TMBi poses many challenges that need to be met until a fully functioning detector for PET applications can be realized. The paper presents an experimental setup that aims to remove electronegative impurities by electrostatic filtering and to characterise the properties of TMBi, e.g. the relative permittivity, for its application as a detector medium for charge read out

A Comparison of Algorithms for the Construction of SZ Cluster Catalogues

We evaluate the construction methodology of an all-sky catalogue of galaxy clusters detected through the Sunyaev-Zel'dovich (SZ) effect. We perform an extensive comparison of twelve algorithms applied to the same detailed simulations of the millimeter and submillimeter sky based on a Planck-like case. We present the results of this "SZ Challenge" in terms of catalogue completeness, purity, astrometric and photometric reconstruction. Our results provide a comparison of a representative sample of SZ detection algorithms and highlight important issues in their application. In our study case, we show that the exact expected number of clusters remains uncertain (about a thousand cluster candidates at |b|> 20 deg with 90% purity) and that it depends on the SZ model and on the detailed sky simulations, and on algorithmic implementation of the detection methods. We also estimate the astrometric precision of the cluster candidates which is found of the order of ~2 arcmins on average, and the photometric uncertainty of order ~30%, depending on flux.Comment: Accepted for publication in A&A: 14 pages, 7 figures. Detailed figures added in Appendi

Visibility diagrams and experimental stripe structure in the quantum Hall effect

We analyze various properties of the visibility diagrams that can be used in the context of modular symmetries and confront them to some recent experimental developments in the Quantum Hall Effect. We show that a suitable physical interpretation of the visibility diagrams which permits one to describe successfully the observed architecture of the Quantum Hall states gives rise naturally to a stripe structure reproducing some of the experimental features that have been observed in the study of the quantum fluctuations of the Hall conductance. Furthermore, we exhibit new properties of the visibility diagrams stemming from the structure of subgroups of the full modular group.Comment: 8 pages in plain TeX, 7 figures in a single postscript fil