Novel frontier in wildlife monitoring: Identification of small rodent species from fecal pellets using near-infrared reflectance spectroscopy (NIRS)

Small rodents are prevalent and functionally important across the world's biomes, making their monitoring salient for ecosystem management, conservation, forestry, and agriculture. There is a growing need for cost-effective and noninvasive methods for large-scale, intensive sampling. Fecal pellet counts readily provide relative abundance indices, and given suitable analytical methods, feces could also allow for the determination of multiple ecological and physiological variables, including community composition. In this context, we developed calibration models for rodent taxonomic determination using fecal near-infrared reflectance spectroscopy (fNIRS). Our results demonstrate fNIRS as an accurate and robust method for predicting genus and species identity of five coexisting subarctic microtine rodent species. We show that sample exposure to weathering increases the method's accuracy, indicating its suitability for samples collected from the field. Diet was not a major determinant of species prediction accuracy in our samples, as diet exhibited large variation and overlap between species. fNIRS could also be applied across regions, as calibration models including samples from two regions provided a good prediction accuracy for both regions. We show fNIRS as a fast and cost-efficient high-throughput method for rodent taxonomic determination, with the potential for cross-regional calibrations and the use on field-collected samples. Importantly, appeal lies in the versatility of fNIRS. In addition to rodent population censuses, fNIRS can provide information on demography, fecal nutrients, stress hormones, and even disease. Given the development of such calibration models, fNIRS analytics could complement novel genetic methods and greatly support ecosystem- and interaction-based approaches to monitoring

Novel frontier in wildlife monitoring : Identification of small rodent species from fecal pellets using near-infrared reflectance spectroscopy (NIRS)

Small rodents are prevalent and functionally important across the world's biomes, making their monitoring salient for ecosystem management, conservation, forestry, and agriculture. There is a growing need for cost-effective and noninvasive methods for large-scale, intensive sampling. Fecal pellet counts readily provide relative abundance indices, and given suitable analytical methods, feces could also allow for the determination of multiple ecological and physiological variables, including community composition. In this context, we developed calibration models for rodent taxonomic determination using fecal near-infrared reflectance spectroscopy (fNIRS). Our results demonstrate fNIRS as an accurate and robust method for predicting genus and species identity of five coexisting subarctic microtine rodent species. We show that sample exposure to weathering increases the method's accuracy, indicating its suitability for samples collected from the field. Diet was not a major determinant of species prediction accuracy in our samples, as diet exhibited large variation and overlap between species. fNIRS could also be applied across regions, as calibration models including samples from two regions provided a good prediction accuracy for both regions. We show fNIRS as a fast and cost-efficient high-throughput method for rodent taxonomic determination, with the potential for cross-regional calibrations and the use on field-collected samples. Importantly, appeal lies in the versatility of fNIRS. In addition to rodent population censuses, fNIRS can provide information on demography, fecal nutrients, stress hormones, and even disease. Given the development of such calibration models, fNIRS analytics could complement novel genetic methods and greatly support ecosystem- and interaction-based approaches to monitoring.Peer reviewe

Herbivore Effects on Ecosystem Process Rates in a Low-Productive System

Mammalian herbivores shape the structure and function of many nutrient-limited or low-productive terrestrial ecosystems through modification of plant communities and plant–soil feedbacks. In the tundra biome, mammalian herbivores may both accelerate and decelerate plant biomass growth, microbial activity and nutrient cycling, that is, ecosystem process rates. Selective foraging and associated declines of palatable species are known to be major drivers of plant–soil feedbacks. However, declines in dominant plants of low palatability often linked with high herbivore densities may also modify ecosystem process rates, yet have received little attention. We present data from an island experiment with a 10-year vole density manipulation, to test the hypothesis that herbivores accelerate process rates by decreasing the relative abundance of poorly palatable plants to palatable ones. We measured plant species abundances and community composition, nitrogen contents of green plant tissues and multiple soil and litter variables under high and low vole density. Corroborating our hypothesis, periodic high vole density increased ecosystem process rates in low-productive tundra. High vole density was associated with both increasing relative abundance of palatable forbs over unpalatable evergreen dwarf shrubs and higher plant N content both at species and at community level. Changes in plant community composition, in turn, explained variation in microbial activity in litter and soil inorganic nutrient availability. We propose a new conceptual model with two distinct vole–plant–soil feedback pathways. Voles may drive local plant–soil feedbacks that either increase or decrease ecosystem process rates, in turn promoting heterogeneity in vegetation and soils across tundra landscapes.</p

Sedimentary ancient DNA shows terrestrial plant richness continuously increased over the Holocene in northern Fennoscandia

The effects of climate change on species richness are debated but can be informed by the past. Here, we generated a sedimentary ancient DNA dataset covering 10 lakes and applied novel methods for data harmonization. We assessed the impact of Holocene climate changes and nutrients on terrestrial plant richness in northern Fennoscandia. We find that richness increased steeply during the rapidly warming Early Holocene. In contrast to findings from most pollen studies, we show that richness continued to increase thereafter, although the climate was stable, with richness and the regional species pool only stabilizing during the past three millennia. Furthermore, overall increases in richness were greater in catchments with higher soil nutrient availability. We suggest that richness will increase with ongoing warming, especially at localities with high nutrient availability and assuming that human activity remains low in the region, although lags of millennia may be expected.The effects of climate change on species richness are debated but can be informed by the past. Here, we generated a sedimentary ancient DNA dataset covering 10 lakes and applied novel methods for data harmonization. We assessed the impact of Holocene climate changes and nutrients on terrestrial plant richness in northern Fennoscandia. We find that richness increased steeply during the rapidly warming Early Holocene. In contrast to findings from most pollen studies, we show that richness continued to increase thereafter, although the climate was stable, with richness and the regional species pool only stabilizing during the past three millennia. Furthermore, overall increases in richness were greater in catchments with higher soil nutrient availability. We suggest that richness will increase with ongoing warming, especially at localities with high nutrient availability and assuming that human activity remains low in the region, although lags of millennia may be expected.Peer reviewe

Soil organic carbon depletion and degradation in surface soil after long-term non-growing season warming in High Arctic Svalbard

Arctic tundra active-layer soils are at risk of soil organic carbon (SOC) depletion and degradation upon global climate warming because they are in a stage of relatively early decomposition. Non-growing season (NGS) warming is particularly pronounced, and observed increases of CO2 emissions during experimentally warmed NGSs give concern for great SOC losses to the atmosphere. Here, we used snow fences in Arctic Spitsbergen dwarf shrub tundra to simulate 1.86 °C NGS warming for 9 consecutive years, while growing season temperatures remained unchanged. In the snow fence treatment, the 4-11 cm thick A-horizon had a 2% lower SOC concentration and a 0.48 kg C m−2 smaller pool size than the controls, indicating SOC pool depletion. The snow fence treatment's A-horizon's alkyl/O-alkyl ratio was also significantly increased, indicating an advance of SOC degradation. The underlying 5 cm of B/C-horizon did not show these effects. Our results support the hypothesis that SOC depletion and degradation are connected to the long-term transience of observed ecosystem respiration (ER) increases upon soil warming. We suggest that the bulk of warming induced ER increases may originate from surface and not deep active layer or permafrost horizons. The observed losses of SOC might be significant for the ecosystem in question, but are in magnitude comparatively small relative to anthropogenic greenhouse gas enrichment of the atmosphere. We conclude that a positive feedback of carbon losses from surface soils of Arctic dwarf shrub tundra to anthropogenic forcing will be minor, but not negligible

Herbivore effects on ecosystem process rates in a low-productive system

Abstract Mammalian herbivores shape the structure and function of many nutrient-limited or low-productive terrestrial ecosystems through modification of plant communities and plant–soil feedbacks. In the tundra biome, mammalian herbivores may both accelerate and decelerate plant biomass growth, microbial activity and nutrient cycling, that is, ecosystem process rates. Selective foraging and associated declines of palatable species are known to be major drivers of plant–soil feedbacks. However, declines in dominant plants of low palatability often linked with high herbivore densities may also modify ecosystem process rates, yet have received little attention. We present data from an island experiment with a 10-year vole density manipulation, to test the hypothesis that herbivores accelerate process rates by decreasing the relative abundance of poorly palatable plants to palatable ones. We measured plant species abundances and community composition, nitrogen contents of green plant tissues and multiple soil and litter variables under high and low vole density. Corroborating our hypothesis, periodic high vole density increased ecosystem process rates in low-productive tundra. High vole density was associated with both increasing relative abundance of palatable forbs over unpalatable evergreen dwarf shrubs and higher plant N content both at species and at community level. Changes in plant community composition, in turn, explained variation in microbial activity in litter and soil inorganic nutrient availability. We propose a new conceptual model with two distinct vole–plant–soil feedback pathways. Voles may drive local plant–soil feedbacks that either increase or decrease ecosystem process rates, in turn promoting heterogeneity in vegetation and soils across tundra landscapes