92 research outputs found

    Common garden experiments in the genomic era : new perspectives and opportunities

    Get PDF
    PdV was supported by a doctoral studentship from the French Ministère de la Recherche et de l’Enseignement Supérieur. OEG was supported by the Marine Alliance for Science and Technology for Scotland (MASTS)The study of local adaptation is rendered difficult by many evolutionary confounding phenomena (e.g. genetic drift and demographic history). When complex traits are involved in local adaptation, phenomena such as phenotypic plasticity further hamper evolutionary biologists to study the complex relationships between phenotype, genotype and environment. In this perspective paper, we suggest that the common garden experiment, specifically designed to deal with phenotypic plasticity has a clear role to play in the study of local adaptation, even (if not specifically) in the genomic era. After a quick review of some high-throughput genotyping protocols relevant in the context of a common garden, we explore how to improve common garden analyses with dense marker panel data and recent statistical methods. We then show how combining approaches from population genomics and genome-wide association studies with the settings of a common garden can yield to a very efficient, thorough and integrative study of local adaptation. Especially, evidence from genomic (e.g. genome scan) and phenotypic origins constitute independent insights into the possibility of local adaptation scenarios, and genome-wide association studies in the context of a common garden experiment allow to decipher the genetic bases of adaptive traits.PostprintPeer reviewe

    Correlaciones bioestratigráficas en el Toarciense de la Península Ibérica.

    Get PDF
    [ES] La comparación entre las escalas bioestratigráficas del Toarciense de las Cordilleras Ibérica y Béticas y de Portugal ha permitido el establecimiento de varias correlaciones, a pesar de un cierto número de problemas (asociaciones fánicas de afinidades distintas, diferencia de criterios en la definición de las unidades cronológicas, ausencia local de ciertos indicadores paleontológicos, diversidad de las concepciones taxonómicas de los autores)[FR] La comparaison entre les échelles biostratigraphiques du Toarcien des Cordilléres lbérique et Bétiques et du Portugal a permit to l’établissement de plusieurs correlations. Malgré un certain nombre de problémes (associations fauniques d´affinitié. defferences de critères dans la définítion des unités cronologiques, absence locale de certaíns repères palèontologiques deversité des conceptions taxomiomiques des auteurs.[EN] Comparisons among biostratigraphic of the lberian Range. Betic Range and Portugal pcrmit to stablis correlations. Nevertheless some dificulties were present: faunics associations of different affinities. different criteria in the definition of the cronologic units local absence of some paleontological indicators and the contrasted opinions of the a uthíors about the taxomiomic concepts.Peer reviewe

    Predictors of radiographic progression in the ESPOIR cohort: the season of first symptoms may influence the short-term outcome in early arthritis.

    No full text
    International audienceOBJECTIVES: To determine predictors of short-term radiographic progression in an inception cohort of patients with early arthritis. METHODS: Patients presenting with synovitis of at least two joints for 6 weeks to 6 months were included in the Etude et Suivi des POlyarthrites Indifferenciées Récentes (ESPOIR) cohort. Univariate analysis was used to determine the relationship between baseline variables and radiographic outcome (assessed by the modified total Sharp score (mTSS)) after 6 and 12 months. Stepwise multiple logistic regression was used to select independent predictive factors. The sensitivity and specificity of rheumatoid factor (RF) and anti-citrullinated protein antibodies (ACPA) at baseline in discriminating between erosive and non-erosive disease were determined by receiver operating characteristic (ROC) curves. RESULTS: From data available for 736 patients, radiographic progression at 6 months was independently predicted by baseline ACPA, human leucocyte antigen (HLA)-DRB1*01 and/or 04 genes, erythrocyte sedimentation rate and mTSS. Interestingly, the season of onset of the first symptoms was associated with the severity of early arthritis (OR 1.66, 95% CI 1.07 to 2.59, in winter and spring vs summer and autumn). Univariate analysis revealed similar results for season at 12 months (OR 1.68, 95% CI 1.20 to 2.37). The peak of the ROC curves for radiographic outcome occurred with ACPA and RF values similar to the cut-offs provided by manufacturers. CONCLUSION: The authors found the onset of arthritis symptoms during winter or spring associated with greater radiographic progression at 6 months for patients with early arthritis. These data could reinforce the role of environmental factors in the development and outcome of rheumatoid arthritis
    corecore