Microarray sub-grid detection: A novel algorithm

This is the post print version of the article. The official published version can be obtained from the link below - Copyright 2007 Taylor & Francis LtdA novel algorithm for detecting microarray subgrids is proposed. The only input to the algorithm is the raw microarray image, which can be of any resolution, and the subgrid detection is performed with no prior assumptions. The algorithm consists of a series of methods of spot shape detection, spot filtering, spot spacing estimation, and subgrid shape detection. It is shown to be able to divide images of varying quality into subgrid regions with no manual interaction. The algorithm is robust against high levels of noise and high percentages of poorly expressed or missing spots. In addition, it is proved to be effective in locating regular groupings of primitives in a set of non-microarray images, suggesting potential application in the general area of image processing

Extinction toward the Compact HII Regions G-0.02-0.07

The four HII regions in the Sgr A East complex: A, B, C, and D, represent evidence of recent massive star formation in the central ten parsecs. Using Paschen-alpha images taken with HST and 8.4 GHz VLA data, we construct an extinction map of A-D, and briefly discuss their morphology and location.Comment: 2 pages, 1 figure. To be published in the Astronomical Society of the Pacific Conference Series Proceedings of the Galactic Center Workshop 2009, Shangha

Simulations and cosmological inference: A statistical model for power spectra means and covariances

We describe an approximate statistical model for the sample variance distribution of the non-linear matter power spectrum that can be calibrated from limited numbers of simulations. Our model retains the common assumption of a multivariate Normal distribution for the power spectrum band powers, but takes full account of the (parameter dependent) power spectrum covariance. The model is calibrated using an extension of the framework in Habib et al. (2007) to train Gaussian processes for the power spectrum mean and covariance given a set of simulation runs over a hypercube in parameter space. We demonstrate the performance of this machinery by estimating the parameters of a power-law model for the power spectrum. Within this framework, our calibrated sample variance distribution is robust to errors in the estimated covariance and shows rapid convergence of the posterior parameter constraints with the number of training simulations.Comment: 14 pages, 3 figures, matches final version published in PR

HST Palpha Survey of the Galactic Center -- Searching the missing young stellar populations within the Galactic Center

We present preliminary results of our \hst Pa$\alpha$ survey of the Galactic Center (\gc), which maps the central 0.65$\times$0.25 degrees around Sgr A*. This survey provides us with a more complete inventory of massive stars within the \gc, compared to previous observations. We find 157 Pa$\alpha$ emitting sources, which are evolved massive stars. Half of them are located outside of three young massive star clusters near Sgr A*. The loosely spatial distribution of these field sources suggests that they are within less massive star clusters/groups, compared to the three massive ones. Our Pa$\alpha$ mosaic not only resolves previously well-known large-scale filaments into fine structures, but also reveals many new extended objects, such as bow shocks and H II regions. In particular, we find two regions with large-scale Pa$\alpha$ diffuse emission and tens of Pa$\alpha$ emitting sources in the negative Galactic longitude suggesting recent star formation activities, which were not known previously. Furthermore, in our survey, we detect $\sim$0.6 million stars, most of which are red giants or AGB stars. Comparisons of the magnitude distribution in 1.90 $\mu$m and those from the stellar evolutionary tracks with different star formation histories suggest an episode of star formation process about 350 Myr ago in the \gc .Comment: 10 pages, 6 figures, Proceedings of the Galactic Center Workshop 2009, Shangha

SiS in the circumstellar envelope of IRC +10126: maser and quasi-thermal emission

We present new Effelsberg-100 m, ATCA, and VLA observations of rotational SiS transitions in the circumstellar envelope (CSE) of IRC +10216. Thanks to the high angular resolution achieved by the ATCA observations, we unambiguously confirm that the molecule's J=1-0 transition exhibits maser action in this CSE, as first suggested more than thirty years ago. The maser emission's radial velocity peaking at a local standard of rest velocity of -39.862$\pm$0.065 km/s indicates that it arises from an almost fully accelerated shell. Monitoring observations show time variability of the SiS (1-0) maser. The two lowest-$J$ SiS quasi-thermal emission lines trace a much more extended emitting region than previous high-J SiS observations. Their distributions show that the SiS quasi-thermal emission consists of two components: one is very compact (radius<1.5", corresponding to <3$\times 10^{15}$ cm), and the other extends out to a radius >11". An incomplete shell-like structure is found in the north-east, which is indicative of existing SiS shells. Clumpy structures are also revealed in this CSE. The gain of the SiS (1-0) maser (optical depths of about -5 at the blue-shifted side and, assuming inversion throughout the entire line's velocity range, about -2 at the red-shifted side) suggests that it is unsaturated. The SiS (1-0) maser can be explained in terms of ro-vibrational excitation caused by infrared pumping, and we propose that infrared continuum emission is the main pumping source.Comment: Accepted for publication in ApJ. A high-resolution version can be found at https://gongyan2444.github.io/pdf/cw-leo-sis.pdf 3D movies of SiS cubes can be found at https://gongyan2444.github.io/movie/sis10-3d.avi and https://gongyan2444.github.io/movie/sis21-3d.av

Assortative mixing in networks

A network is said to show assortative mixing if the nodes in the network that have many connections tend to be connected to other nodes with many connections. We define a measure of assortative mixing for networks and use it to show that social networks are often assortatively mixed, but that technological and biological networks tend to be disassortative. We propose a model of an assortative network, which we study both analytically and numerically. Within the framework of this model we find that assortative networks tend to percolate more easily than their disassortative counterparts and that they are also more robust to vertex removal.Comment: 5 pages, 1 table, 1 figur

X-ray Bright Active Galactic Nuclei in Massive Galaxy Clusters II: The Fraction of Galaxies Hosting Active Nuclei

We present a measurement of the fraction of cluster galaxies hosting X-ray bright Active Galactic Nuclei (AGN) as a function of clustercentric distance scaled in units of $r_{500}$. Our analysis employs high quality Chandra X-ray and Subaru optical imaging for 42 massive X-ray selected galaxy cluster fields spanning the redshift range of $0.2 < z < 0.7$. In total, our study involves 176 AGN with bright ($R <23$) optical counterparts above a $0.5-8.0$ keV flux limit of $10^{-14} \rm{erg} \ \rm{cm}^{-2} \ \rm{s}^{-1}$. When excluding central dominant galaxies from the calculation, we measure a cluster-galaxy AGN fraction in the central regions of the clusters that is $\sim 3$ times lower that the field value. This fraction increases with clustercentric distance before becoming consistent with the field at $\sim 2.5 r_{500}$. Our data exhibit similar radial trends to those observed for star formation and optically selected AGN in cluster member galaxies, both of which are also suppressed near cluster centers to a comparable extent. These results strongly support the idea that X-ray AGN activity and strong star formation are linked through their common dependence on available reservoirs of cold gas.Comment: 9 Pages, 4 Figures, accepted for publication in MNRAS, please contact Steven Ehlert ([email protected]) with any querie

HST/NICMOS Paschen-alpha Survey of the Galactic Center: Overview

We have recently carried out the first wide-field hydrogen Paschen-alpha line imaging survey of the Galactic Center (GC), using the NICMOS instrument aboard the Hubble Space Telescope. The survey maps out a region of 2253 pc^2 around the central supermassive black hole (Sgr A*) in the 1.87 and 1.90 Micron narrow bands with a spatial resolution of 0.01 pc at a distance of 8 kpc. Here we present an overview of the observations, data reduction, preliminary results, and potential scientific implications, as well as a description of the rationale and design of the survey. We have produced mosaic maps of the Paschen-alpha line and continuum emission, giving an unprecedentedly high resolution and high sensitivity panoramic view of stars and photo-ionized gas in the nuclear environment of the Galaxy. We detect a significant number of previously undetected stars with Paschen-alpha in emission. They are most likely massive stars with strong winds, as confirmed by our initial follow-up spectroscopic observations. About half of the newly detected massive stars are found outside the known clusters (Arches, Quintuplet, and Central). Many previously known diffuse thermal features are now resolved into arrays of intriguingly fine linear filaments indicating a profound role of magnetic fields in sculpting the gas. The bright spiral-like Paschen-alpha emission around Sgr A* is seen to be well confined within the known dusty torus. In the directions roughly perpendicular to it, we further detect faint, diffuse Paschen-alpha emission features, which, like earlier radio images, suggest an outflow from the structure. In addition, we detect various compact Paschen-alpha nebulae, probably tracing the accretion and/or ejection of stars at various evolutionary stages.Comment: accepted for publication in MNRAS; a version of higher resolution images may be found at http://www.astro.umass.edu/~wqd/papers/hst/paper1.pd

Adjusting the melting point of a model system via Gibbs-Duhem integration: application to a model of Aluminum

Model interaction potentials for real materials are generally optimized with respect to only those experimental properties that are easily evaluated as mechanical averages (e.g., elastic constants (at T=0 K), static lattice energies and liquid structure). For such potentials, agreement with experiment for the non-mechanical properties, such as the melting point, is not guaranteed and such values can deviate significantly from experiment. We present a method for re-parameterizing any model interaction potential of a real material to adjust its melting temperature to a value that is closer to its experimental melting temperature. This is done without significantly affecting the mechanical properties for which the potential was modeled. This method is an application of Gibbs-Duhem integration [D. Kofke, Mol. Phys.78, 1331 (1993)]. As a test we apply the method to an embedded atom model of aluminum [J. Mei and J.W. Davenport, Phys. Rev. B 46, 21 (1992)] for which the melting temperature for the thermodynamic limit is 826.4 +/- 1.3K - somewhat below the experimental value of 933K. After re-parameterization, the melting temperature of the modified potential is found to be 931.5K +/- 1.5K.Comment: 9 pages, 5 figures, 4 table

Darboux Transformations for Supersymmetric Korteweg - de Vries Equations

\hspace{.2in}We consider the Darboux type transformations for the spectral problems of supersymmetric KdV systems. The supersymmetric analogies of Darboux and Darboux-Levi transformations are established for the spectral problems of Manin-Radul-Mathieu sKdV and Manin-Radul sKdV. Several B\"acklund transformations are derived for the MRM sKdV and MR sKdV systems.Comment: Latex, 8 pages AS-ITP-94-4