Comparative cytogenetic characterization of primary canine melanocytic lesions using array CGH and fluorescence in situ hybridization

Melanocytic lesions originating from the oral mucosa or cutaneous epithelium are common in the general dog population, with up to 100,000 diagnoses each year in the USA. Oral melanoma is the most frequent canine neoplasm of the oral cavity, exhibiting a highly aggressive course. Cutaneous melanocytomas occur frequently, but rarely develop into a malignant form. Despite the differential prognosis, it has been assumed that subtypes of melanocytic lesions represent the same disease. To address the relative paucity of information about their genomic status, molecular cytogenetic analysis was performed on the three recognized subtypes of canine melanocytic lesions. Using array comparative genomic hybridization (aCGH) analysis, highly aberrant distinct copy number status across the tumor genome for both of the malignant melanoma subtypes was revealed. The most frequent aberrations included gain of dog chromosome (CFA) 13 and 17 and loss of CFA 22. Melanocytomas possessed fewer genome wide aberrations, yet showed a recurrent gain of CFA 20q15.3–17. A distinctive copy number profile, evident only in oral melanomas, displayed a sigmoidal pattern of copy number loss followed immediately by a gain, around CFA 30q14. Moreover, when assessed by fluorescence in situ hybridization (FISH), copy number aberrations of targeted genes, such as gain of c-MYC (80 % of cases) and loss of CDKN2A (68 % of cases), were observed. This study suggests that in concordance with what is known for human melanomas, canine melanomas of the oral mucosa and cutaneous epithelium are discrete and initiated by different molecular pathways

Temporal and spatial patterns in the abundance of jellyfish in the northern Benguela upwelling ecosystem and their link to thwarted pelagic fishery recovery

There has been debate in the literature about whether jellyfish abundance has increased in the northern Benguela upwelling system, or not, over the past five decades and what impact they are having on pelagic fish. Here we review old expedition literature as well as more recent spatial and temporal patterns in distribution of jellyfish off Namibia at a number of different scales, using both published and previously unpublished data. Specifically, we have used data from fishery-dependent sources of both the demersal (359 638 trawls) and pelagic fisheries (11 324 purse-seine sets) that cover the period 1992–2006, supported by data from fishery-independent demersal (6 109 trawls) and pelagic trawls (1 817 trawls) from 1996 to 2006. Using frequency of capture as an index of abundance, it is clear that jellyfish are not randomly distributed within the northern Benguela ecosystem, but show specific areas of concentration that broadly reflect regional oceanography and the distribution of other zooplankton. Although jellyfish are present throughout the year, peaks in abundance are shown that often coincide with peaks in the spawning activity of fish of commercial importance. Interannual changes in jellyfish abundance observed from all sources do not agree, with some showing increases, others declines, and still others showing no change, which suggests caution should be exercised in their interpretation. Based on the multiple lines of evidence synthesised here, we conclude that jellyfish abundance has increased concomitant with a decline of pelagic fish stocks. We conclude that future recovery of the pelagic fishery off Namibia is likely to be considerably challenged because of significant overlaps in space and time between fish and jellyfish, and through the effects of competition and predation effects of jellyfish on fish