Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance

BACKGROUND: Improvement of Citrus, the most economically important fruit crop in the world, is extremely slow and inherently costly because of the long-term nature of tree breeding and an unusual combination of reproductive characteristics. Aside from disease resistance, major commercial traits in Citrus are improved fruit quality, higher yield and tolerance to environmental stresses, especially salinity. RESULTS: A normalized full length and 9 standard cDNA libraries were generated, representing particular treatments and tissues from selected varieties (Citrus clementina and C. sinensis) and rootstocks (C. reshni, and C. sinenis × Poncirus trifoliata) differing in fruit quality, resistance to abscission, and tolerance to salinity. The goal of this work was to provide a large expressed sequence tag (EST) collection enriched with transcripts related to these well appreciated agronomical traits. Towards this end, more than 54000 ESTs derived from these libraries were analyzed and annotated. Assembly of 52626 useful sequences generated 15664 putative transcription units distributed in 7120 contigs, and 8544 singletons. BLAST annotation produced significant hits for more than 80% of the hypothetical transcription units and suggested that 647 of these might be Citrus specific unigenes. The unigene set, composed of ~13000 putative different transcripts, including more than 5000 novel Citrus genes, was assigned with putative functions based on similarity, GO annotations and protein domains CONCLUSION: Comparative genomics with Arabidopsis revealed the presence of putative conserved orthologs and single copy genes in Citrus and also the occurrence of both gene duplication events and increased number of genes for specific pathways. In addition, phylogenetic analysis performed on the ammonium transporter family and glycosyl transferase family 20 suggested the existence of Citrus paralogs. Analysis of the Citrus gene space showed that the most important metabolic pathways known to affect fruit quality were represented in the unigene set. Overall, the similarity analyses indicated that the sequences of the genes belonging to these varieties and rootstocks were essentially identical, suggesting that the differential behaviour of these species cannot be attributed to major sequence divergences. This Citrus EST assembly contributes both crucial information to discover genes of agronomical interest and tools for genetic and genomic analyses, such as the development of new markers and microarrays

31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016) : part two

Background The immunological escape of tumors represents one of the main ob- stacles to the treatment of malignancies. The blockade of PD-1 or CTLA-4 receptors represented a milestone in the history of immunotherapy. However, immune checkpoint inhibitors seem to be effective in specific cohorts of patients. It has been proposed that their efficacy relies on the presence of an immunological response. Thus, we hypothesized that disruption of the PD-L1/PD-1 axis would synergize with our oncolytic vaccine platform PeptiCRAd. Methods We used murine B16OVA in vivo tumor models and flow cytometry analysis to investigate the immunological background. Results First, we found that high-burden B16OVA tumors were refractory to combination immunotherapy. However, with a more aggressive schedule, tumors with a lower burden were more susceptible to the combination of PeptiCRAd and PD-L1 blockade. The therapy signifi- cantly increased the median survival of mice (Fig. 7). Interestingly, the reduced growth of contralaterally injected B16F10 cells sug- gested the presence of a long lasting immunological memory also against non-targeted antigens. Concerning the functional state of tumor infiltrating lymphocytes (TILs), we found that all the immune therapies would enhance the percentage of activated (PD-1pos TIM- 3neg) T lymphocytes and reduce the amount of exhausted (PD-1pos TIM-3pos) cells compared to placebo. As expected, we found that PeptiCRAd monotherapy could increase the number of antigen spe- cific CD8+ T cells compared to other treatments. However, only the combination with PD-L1 blockade could significantly increase the ra- tio between activated and exhausted pentamer positive cells (p= 0.0058), suggesting that by disrupting the PD-1/PD-L1 axis we could decrease the amount of dysfunctional antigen specific T cells. We ob- served that the anatomical location deeply influenced the state of CD4+ and CD8+ T lymphocytes. In fact, TIM-3 expression was in- creased by 2 fold on TILs compared to splenic and lymphoid T cells. In the CD8+ compartment, the expression of PD-1 on the surface seemed to be restricted to the tumor micro-environment, while CD4 + T cells had a high expression of PD-1 also in lymphoid organs. Interestingly, we found that the levels of PD-1 were significantly higher on CD8+ T cells than on CD4+ T cells into the tumor micro- environment (p < 0.0001). Conclusions In conclusion, we demonstrated that the efficacy of immune check- point inhibitors might be strongly enhanced by their combination with cancer vaccines. PeptiCRAd was able to increase the number of antigen-specific T cells and PD-L1 blockade prevented their exhaus- tion, resulting in long-lasting immunological memory and increased median survival

Acta Horticulturae

Mandarin genotypes can be split in two main groups: the acidic and the sweet mandarins. Commonly, acidic are used as rootstocks when sweet mandarins are the varieties that are consumed as fruits. The acidic &#39;Cleopatra&#39; mandarin (Citrus reshni Hort. ex Tan.) is considered to be the most salt stress tolerant rootstock since it is able to limit the absorption of chloride and sodium at root level. As a consequence, limited amount of toxic ions are translocated from root to leaves. If salt stress tolerance of &#39;Cleopatra&#39; mandarin and its hybrids has been well documented, little data exist for sweet mandarins. We investigated 16 genotypes representing a large diversity in mandarins subjected to salt stress. Physiological parameters such as stomatal conductance and leaf chloride contents were analyzed. If most of the acidic varieties were tolerant, also some sweet varieties presented traits of tolerance. Taking into account the results of leaf ion contents, we observed that large leaf chloride contents were not always associated with sensitivity

An aquaglyceroporin is abundantly expressed early in the development of the suspensor and the embryo proper of loblolly pine (Pinus taeda L.)

"September 2001."Submitted to Plant Physiolog

Genetic diversity revealed by physiological behavior of citrus genotypes subjected to salt stress

Different physiological behavior of a wide range of varieties and species belonging to the Citrus genus was analyzed when subjected to salt stress with the aim to seek new sources of tolerance that might be specie-specific. Our goal was to use physiological results obtained along a salt stress in order to clarify if it would be possible to associate them with the known citrus genetic diversity. For that purpose, we have selected 20 different genotypes representing the major species on the basis of the genetic diversity of Citrus genus complemented with one intergeneric hybrid Carrizo citrange (C. sinensis 9 P. trifoliata). A moderate salt stress of 75 mM of NaCl was applied for 12 weeks. For control plants, the main parameters contributing for more than 25 % to the diversity on the two axes of principal component analysis (PCA) were chlorophyll content, photosynthesis and Fv/ Fm under light. However, the dispersal of species and varieties on the PCA did not show any particular structure. Under salt stress condition, four parameters (leaf chloride content, leaf chlorophyll content, photosynthesis and stomatal conductance) contributed more specifically to the dispersion on PCA representation with more than 15 % of contribution for each parameter. Large differences were observed within citrus genus: mandarin and pummelo presented good tolerance to salt stress while citron was very sensitive. Furthermore, all secondary genotypes that presented good tolerance to salt tolerance shared mandarin or pummelo as female parent

BEHAVIOR OF DIPLOID AND TETRAPLOID GENOTYPES OF 'CARRIZO' CITRANGE UNDER ABIOTIC STRESS

Tetraploidy is a spontaneous phenomenon in citrus that leads to some anatomical differences between tetraploid (4x) and the corresponding diploid (2x) citrus seedlings, and interesting phenotypes like dwarfism and tolerance to abiotic constraints. The choice of a suitable rootstock is often very restricted by a combination of biotic and abiotic stresses. In this work we investigated the behavior of 4x and 2x &#39;Carrizo&#39; citrange (Citrus sinensis x Poncirus trifoliata) subjected to the main abiotic stresses that threat the Spanish citrus industry. Seedlings were exposed to salinity, drought and iron deficiency, and physiological parameters were measured. Results suggest that 4x plants stressed by drought were less affected than 2x. Under salt stress no difference was found in leaf ion content, neither in gas exchange parameters, but leaf burn was less severe in 4x than in 2x. Concerning iron deficiency, a better tolerance of 4x compared to 2x was supported by higher Ferricchelate reductase activity, SPAD index and chlorophyll fluorescence. These preliminary results suggest that 4x &#39;Carrizo&#39; citrange could be a promising rootstock, having nearly the same performance than the original 2x, but producing smaller trees more tolerant to abiotic stresses

Evaluation of the adaptation of Citrus polyploid (Rootstocks/varietes associations) to water deficit

International audienc

Triploidy in Citrus Genotypes Improves Leaf Gas Exchange and Antioxidant Recovery From Water Deficit

International audienceThe triploidy has proved to be a powerful approach breeding programs, especially in Citrus since seedlessness is one of the main consumer expectations. Citrus plants face numerous abiotic stresses including water deficit, which negatively impact growth and crop yield. In this study, we evaluated the physiological and biochemical responses to water deficit and recovery capacity of new triploid hybrids, in comparison with diploid hybrids, their parents (“Fortune” mandarin and “Ellendale” tangor) and one clementine tree used as reference. The water deficit significantly decreased the relative water content (RWC) and leaf gas exchange (Pnet and gs) and it increased the levels of oxidative markers (H2O2 and MDA) and antioxidants. Compared to diploid varieties, triploid hybrids limited water loss by osmotic adjustment as reflected by higher RWC, intrinsic water use efficiency (iWUE Pnet/gs) iWUE and leaf proline levels. These had been associated with an effective thermal dissipation of excess energy (NPQ) and lower oxidative damage. Our results showed that triploidy in citrus enhances the recovery capacity after a water deficit in comparison with diploids due to better carboxylation efficiency, restored water-related parameters and efficient antioxidant system

Acta Horticulturae

Tetraploidy is a spontaneous phenomenon in citrus that leads to some anatomical differences between tetraploid (4x) and the corresponding diploid (2x) citrus seedlings, and interesting phenotypes like dwarfism and tolerance to abiotic constraints. The choice of a suitable rootstock is often very restricted by a combination of biotic and abiotic stresses. In this work we investigated the behavior of 4x and 2x &#39;Carrizo&#39; citrange (Citrus sinensis x Poncirus trifoliata) subjected to the main abiotic stresses that threat the Spanish citrus industry. Seedlings were exposed to salinity, drought and iron deficiency, and physiological parameters were measured. Results suggest that 4x plants stressed by drought were less affected than 2x. Under salt stress no difference was found in leaf ion content, neither in gas exchange parameters, but leaf burn was less severe in 4x than in 2x. Concerning iron deficiency, a better tolerance of 4x compared to 2x was supported by higher Ferricchelate reductase activity, SPAD index and chlorophyll fluorescence. These preliminary results suggest that 4x &#39;Carrizo&#39; citrange could be a promising rootstock, having nearly the same performance than the original 2x, but producing smaller trees more tolerant to abiotic stresses