Efficient coding of spectrotemporal binaural sounds leads to emergence of the auditory space representation

To date a number of studies have shown that receptive field shapes of early sensory neurons can be reproduced by optimizing coding efficiency of natural stimulus ensembles. A still unresolved question is whether the efficient coding hypothesis explains formation of neurons which explicitly represent environmental features of different functional importance. This paper proposes that the spatial selectivity of higher auditory neurons emerges as a direct consequence of learning efficient codes for natural binaural sounds. Firstly, it is demonstrated that a linear efficient coding transform - Independent Component Analysis (ICA) trained on spectrograms of naturalistic simulated binaural sounds extracts spatial information present in the signal. A simple hierarchical ICA extension allowing for decoding of sound position is proposed. Furthermore, it is shown that units revealing spatial selectivity can be learned from a binaural recording of a natural auditory scene. In both cases a relatively small subpopulation of learned spectrogram features suffices to perform accurate sound localization. Representation of the auditory space is therefore learned in a purely unsupervised way by maximizing the coding efficiency and without any task-specific constraints. This results imply that efficient coding is a useful strategy for learning structures which allow for making behaviorally vital inferences about the environment.Comment: 22 pages, 9 figure

The Opponent Channel Population Code of Sound Location Is an Efficient Representation of Natural Binaural Sounds

In mammalian auditory cortex, sound source position is represented by a population of broadly tuned neurons whose firing is modulated by sounds located at all positions surrounding the animal. Peaks of their tuning curves are concentrated at lateral position, while their slopes are steepest at the interaural midline, allowing for the maximum localization accuracy in that area. These experimental observations contradict initial assumptions that the auditory space is represented as a topographic cortical map. It has been suggested that a “panoramic” code has evolved to match specific demands of the sound localization task. This work provides evidence suggesting that properties of spatial auditory neurons identified experimentally follow from a general design principle- learning a sparse, efficient representation of natural stimuli. Natural binaural sounds were recorded and served as input to a hierarchical sparse-coding model. In the first layer, left and right ear sounds were separately encoded by a population of complex-valued basis functions which separated phase and amplitude. Both parameters are known to carry information relevant for spatial hearing. Monaural input converged in the second layer, which learned a joint representation of amplitude and interaural phase difference. Spatial selectivity of each second-layer unit was measured by exposing the model to natural sound sources recorded at different positions. Obtained tuning curves match well tuning characteristics of neurons in the mammalian auditory cortex. This study connects neuronal coding of the auditory space with natural stimulus statistics and generates new experimental predictions. Moreover, results presented here suggest that cortical regions with seemingly different functions may implement the same computational strategy-efficient coding.German Science Foundation (Graduate College "InterNeuro"

3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context

We present an efficient deep learning approach for the challenging task of tumor segmentation in multisequence MR images. In recent years, Convolutional Neural Networks (CNN) have achieved state-of-the-art performances in a large variety of recognition tasks in medical imaging. Because of the considerable computational cost of CNNs, large volumes such as MRI are typically processed by subvolumes, for instance slices (axial, coronal, sagittal) or small 3D patches. In this paper we introduce a CNN-based model which efficiently combines the advantages of the short-range 3D context and the long-range 2D context. To overcome the limitations of specific choices of neural network architectures, we also propose to merge outputs of several cascaded 2D-3D models by a voxelwise voting strategy. Furthermore, we propose a network architecture in which the different MR sequences are processed by separate subnetworks in order to be more robust to the problem of missing MR sequences. Finally, a simple and efficient algorithm for training large CNN models is introduced. We evaluate our method on the public benchmark of the BRATS 2017 challenge on the task of multiclass segmentation of malignant brain tumors. Our method achieves good performances and produces accurate segmentations with median Dice scores of 0.918 (whole tumor), 0.883 (tumor core) and 0.854 (enhancing core). Our approach can be naturally applied to various tasks involving segmentation of lesions or organs.Comment: Submitted to the journal Computerized Medical Imaging and Graphic

Functional Sensory Representations of Natural Stimuli: the Case of Spatial Hearing

In this thesis I attempt to explain mechanisms of neuronal coding in the auditory system as a form of adaptation to statistics of natural stereo sounds. To this end I analyse recordings of real-world auditory environments and construct novel statistical models of these data. I further compare regularities present in natural stimuli with known, experimentally observed neuronal mechanisms of spatial hearing. In a more general perspective, I use binaural auditory system as a starting point to consider the notion of function implemented by sensory neurons. In particular I argue for two, closely-related tenets: 1. The function of sensory neurons can not be fully elucidated without understanding statistics of natural stimuli they process. 2. Function of sensory representations is determined by redundancies present in the natural sensory environment. I present the evidence in support of the first tenet by describing and analysing marginal statistics of natural binaural sound. I compare observed, empirical distributions with knowledge from reductionist experiments. Such comparison allows to argue that the complexity of the spatial hearing task in the natural environment is much higher than analytic, physics-based predictions. I discuss the possibility that early brain stem circuits such as LSO and MSO do not \"compute sound localization\" as is often being claimed in the experimental literature. I propose that instead they perform a signal transformation, which constitutes the first step of a complex inference process. To support the second tenet I develop a hierarchical statistical model, which learns a joint sparse representation of amplitude and phase information from natural stereo sounds. I demonstrate that learned higher order features reproduce properties of auditory cortical neurons, when probed with spatial sounds. Reproduced aspects were hypothesized to be a manifestation of a fine-tuned computation specific to the sound-localization task. Here it is demonstrated that they rather reflect redundancies present in the natural stimulus. Taken together, results presented in this thesis suggest that efficient coding is a strategy useful for discovering structures (redundancies) in the input data. Their meaning has to be determined by the organism via environmental feedback

Learning Mid-Level Auditory Codes from Natural Sound Statistics

Interaction with the world requires an organism to transform sensory signals into representations in which behaviorally meaningful properties of the environment are made explicit. These representations are derived through cascades of neuronal processing stages in which neurons at each stage recode the output of preceding stages. Explanations of sensory coding may thus involve understanding how low-level patterns are combined into more complex structures. Although models exist in the visual domain to explain how mid-level features such as junctions and curves might be derived from oriented filters in early visual cortex, little is known about analogous grouping principles for mid-level auditory representations. We propose a hierarchical generative model of natural sounds that learns combina- tions of spectrotemporal features from natural stimulus statistics. In the first layer the model forms a sparse convolutional code of spectrograms using a dictionary of learned spectrotemporal kernels. To generalize from specific kernel activation patterns, the second layer encodes patterns of time-varying magnitude of multiple first layer coefficients. Because second-layer features are sensitive to combi- nations of spectrotemporal features, the representation they support encodes more complex acoustic patterns than the first layer. When trained on corpora of speech and environmental sounds, some second-layer units learned to group spectrotemporal features that occur together in natural sounds. Others instantiate opponency between dissimilar sets of spectrotemporal features. Such groupings might be instantiated by neurons in the auditory cortex, providing a hypothesis for mid-level neuronal computation.This work was supported by the Center for Brains, Minds and Machines (CBMM), funded by NSF STC award CCF-1231216

Utilizing Terminal Alkenes in Asymmetric Synthesis: Development and Application of Efficient Diboration/Cross-Coupling Cascades

Thesis advisor: James P. MorkenThe first highly enantioselective diboration of unfunctionalized terminal alkenes has been developed using a platinum-phosphonite complex. This transformation produces versatile 1,2-bis(boronate)esters that can manipulated chemoselectively to generate a pletheroa of enantioenriched structural motifs. When combined with an appropriate palladium catalyst, the diboration product undergoes an efficient alkyl boron cross-coupling with aryl and vinyl electrophiles producing a wide range of enantioenriched homobenzylic and homoallylic boronates. Alternatively, when the 1,2-bis(boronate)ester diboration product contains an adjacent Z-olefin (derived from diboration of cis-1,3-dienes), allylation to aldehydes can be achieved delivering the syndiastereomer of product exclusively with excellent chirality transfer. Notably, the products obtained from the two described reactions contain an additional boronate moiety, which can be further functionalized through known carbon-boron bond transformations.Thesis (PhD) — Boston College, 2014.Submitted to: Boston College. Graduate School of Arts and Sciences.Discipline: Chemistry

Automated Decision Support and Guideline Verification in Clinical Practice

Applying international guidelines in medical, including cardiological, therapies is a guarantee of safe and modern treatment. Unfortunately, standards are often not obeyed. In this paper we present an experimental software program based on rough sets methods. The main aim of this application is to improve patient care and help the decision process using guidelines verification. We concentrate on the practical aspects using these methods. Examples and clinical tests, which were based on real-life data of our patients, show that the accuracy of results reached on a large group of patients could be acceptable in clinical practice. 1