Specification and Verification of Media Constraints using UPPAAL

We present the formal specification and verification of a multimedia stream. The stream is described in a timed automata notation. We verify that the stream satisfies certain quality of service properties, in particular, throughput and end-to-end latency. The verification tool used is the real-time model checker UPPAAL

Multi-Constellation GNSS Multipath Mitigation Using Consistency Checking

In a typical urban environment, a mixture of multipath-free, multipath-contaminated and non-line-of-sight (NLOS) propagated GNSS signals are received. The errors caused by multipath-contaminated and NLOS reception are the dominant source of reduced consumer-grade positioning accuracy in the urban environment. Many conventional receiver-based and antenna-based techniques have been developed to mitigate either multipath or NLOS reception with mixed success. Nevertheless, the positioning accuracy can be maximised based on the simple principle of selecting only those signals least contaminated by multipath and NLOS propagation to form the navigation solution. The advent of multi-constellation GNSS provides the opportunity to realise this technique that is potentially low-cost and effective for consumer-grade devices. It may also be implemented as an augmentation to other multipath mitigation techniques. The focus of this paper is signal selection by consistency checking, whereby measurements from different satellites are compared with each other to identify the NLOS and most multipath-contaminated signals. The principle of consistency checking is that multipath-contaminated and NLOS measurements produce a less consistent navigation solution than multipath-free measurements. RAIM-based fault detection operates on the same principle. Three consistency-checking schemes based on single-epoch least-squares residuals are assessed: single sweep, recursive checking and a hybrid version of the first two. Two types of weighting schemes are also considered: satellite elevation-based and signal C/N0-based weighting. The paper also discussed the different observables that may be used by a consistency-checking algorithm for different applications and their effect on detection sensitivity. Test results for the proposed algorithms are presented using data from both static positioning and stand-alone dynamic positioning experiments. The static data was collected using a pair of survey-grade multi-constellation GNSS receivers using both GPS and GLONASS signals at open sky and urban canyon locations, while the dynamic data was collected using a consumer-grade GPS/GLONASS receiver on a car in a mixed urban environment. Significant improvements in position domain are demonstrated using the weighted recursive methods in the open environments. However in the urban environments, there are insufficient directly received signals for the conventional RAIM-based signal selection to be effective all the time. Both positioning improvements and risky outliers are demonstrated. More advanced techniques have been identified for investigation in future research

Hygienic quality of dehydrated aromatic herbs marketed in Southern Portugal

Dehydrated aromatic herbs are highly valued ingredients, widely used at home level and by food processing industry, frequently added to a great number of recipes in the Mediterranean countries. Despite being considered low-moisture products and classified as GRAS, during pre and post-harvesting stages of production they are susceptible of microbial contamination. In Europe an increasing number of food recalls and disease outbreaks associated with dehydrated herbs have been reported in recent years. In this study the microbial quality of 99 samples of aromatic herbs (bay leaves, basil, coriander, oregano, parsley, Provence herbs, rosemary and thyme) collected from retails shops in the region of Algarve (Southern Portugal) was assessed. All the samples were tested by conventional methods and were assayed for the total count of aerobic mesophilic microorganisms, Salmonella spp., Escherichia coli, coagulase-positive staphylococci and filamentous fungi. Almost 50 % of the herbs did not exceed the aerobic mesophilic level of 104 CFU/g. The fungi count regarded as unacceptable (106 CFU/g) was not found in any of the tested herbs, while 84 % of the samples ranged from ≤102 to 104 CFU/g. No sample was positive for the presence of Salmonella spp., Escherichia coli and staphylococci. The results are in compliance with the European Commission criteria although they point out to the permanent need of surveillance on the good standards of handling/cooking practices as well as the importance of avoiding contamination at production, retailing and distribution. The microbiological hazards associated with the pathogenic and toxigenic microbiota of dried herbs remain as a relevant public health issue, due to the fact that they are added to foods not submitted to any following lethal procedure. Control measures should be adopted in order to ensure that all phases of their supply chain respect the food safety standards.FCT: UID/BIA/04325/2019.info:eu-repo/semantics/publishedVersio

Metabolic compartmentalization in the human cortex and hippocampus: evidence for a cell- and region-specific localization of lactate dehydrogenase 5 and pyruvate dehydrogenase

BACKGROUND: For a long time now, glucose has been thought to be the main, if not the sole substrate for brain energy metabolism. Recent data nevertheless suggest that other molecules, such as monocarboxylates (lactate and pyruvate mainly) could be suitable substrates. Although monocarboxylates poorly cross the blood brain barrier (BBB), such substrates could replace glucose if produced locally.The two key enzymatiques systems required for the production of these monocarboxylates are lactate dehydrogenase (LDH; EC1.1.1.27) that catalyses the interconversion of lactate and pyruvate and the pyruvate dehydrogenase complex that irreversibly funnels pyruvate towards the mitochondrial TCA and oxydative phosphorylation. RESULTS: In this article, we show, with monoclonal antibodies applied to post-mortem human brain tissues, that the typically glycolytic isoenzyme of lactate dehydrogenase (LDH-5; also called LDHA or LDHM) is selectively present in astrocytes, and not in neurons, whereas pyruvate dehydrogenase (PDH) is mainly detected in neurons and barely in astrocytes. At the regional level, the distribution of the LDH-5 immunoreactive astrocytes is laminar and corresponds to regions of maximal 2-deoxyglucose uptake in the occipital cortex and hippocampus. In hippocampus, we observed that the distribution of the oxidative enzyme PDH was enriched in the neurons of the stratum pyramidale and stratum granulosum of CA1 through CA4, whereas the glycolytic enzyme LDH-5 was enriched in astrocytes of the stratum moleculare, the alveus and the white matter, revealing not only cellular, but also regional, selective distributions. The fact that LDH-5 immunoreactivity was high in astrocytes and occurred in regions where the highest uptake of 2-deoxyglucose was observed suggests that glucose uptake followed by lactate production may principally occur in these regions. CONCLUSION: These observations reveal a metabolic segregation, not only at the cellular but also at the regional level, that support the notion of metabolic compartmentalization between astrocytes and neurons, whereby lactate produced by astrocytes could be oxidized by neurons

Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells

This is the final version. Available on open access from Nature Research via the DOI in this recordData availability; All RNA sequencing data and proteomics data is available in Supplementary Data 1–4. Exact p values, where shown on Figs. 1–5, are available in Supplementary Data 5. The source data underlying Figs. 1–5 are provided as Supplementary Data 6. Any other relevant data are available upon reasonable request.The interaction between a cell and its environment shapes fundamental intracellular processes such as cellular metabolism. In most cases growth rate is treated as a proximal metric for understanding the cellular metabolic status. However, changes in growth rate might not reflect metabolic variations in individuals responding to environmental fluctuations. Here we use single-cell microfluidics-microscopy combined with transcriptomics, proteomics and mathematical modelling to quantify the accumulation of glucose within Escherichia coli cells. In contrast to the current consensus, we reveal that environmental conditions which are comparatively unfavourable for growth, where both nutrients and salinity are depleted, increase glucose accumulation rates in individual bacteria and population subsets. We find that these changes in metabolic function are underpinned by variations at the translational and posttranslational level but not at the transcriptional level and are not dictated by changes in cell size. The metabolic response-characteristics identified greatly advance our fundamental understanding of the interactions between bacteria and their environment and have important ramifications when investigating cellular processes where salinity plays an important role.Biotechnology & Biological Sciences Research Council (BBSRC)Biotechnology and Biological Sciences Research Council (BBSRC)Medical Research Council (MRC)Royal SocietyQUEX Initiator grantEuropean Union Horizon 2020Gordon and Betty and Gordon Moore FoundationWellcome Trus

Asthma families show transmission disequilibrium of gene variants in the vitamin D metabolism and signalling pathway

The vitamin D prophylaxis of rickets in pregnant women and newborns may play a role in early allergic sensitization. We now asked if an already diseased population may have inherited genetic variants in the vitamin D turnover or signalling pathway. Serum levels of calcidiol (25-OH-D(3)) and calcitriol (1,25-(OH)(2)-D(3)) were retrospectively assessed in 872 partipants of the German Asthma Family Study. 96 DNA single base variants in 13 different genes were genotyped with MALDI-TOF and a bead array system. At least one positive SNP with a TDT of p < 0.05 for asthma or total IgE and calcidiol or calcitriol was seen in IL10, GC, IL12B, CYP2R1, IL4R, and CYP24A1. Consistent strong genotypic association could not be observed. Haplotype association were found only for CYP24A1, the main calcidiol degrading enzyme, where a frequent 5-point-haplotype was associated with asthma (p = 0,00063), total IgE (p = 0,0014), calcidiol (p = 0,0043) and calcitriol (p = 0,0046). Genetic analysis of biological pathways seem to be a promising approach where this may be a first entry point into effects of a polygenic inherited vitamin D sensitivity that may affect also other metabolic, immunological and cancerous diseases

On the relations between Markov chain lumpability and reversibility

In the literature, the notions of lumpability and time reversibility for large Markov chains have been widely used to efficiently study the functional and non-functional properties of computer systems. In this paper we explore the relations among different definitions of lumpability (strong, exact and strict) and the notion of time-reversed Markov chain. Specifically, we prove that an exact lumping induces a strong lumping on the reversed Markov chain and a strict lumping holds both for the forward and the reversed processes. Based on these results we introduce the class of λρ-reversible Markov chains which combines the notions of lumping and time reversibility modulo state renaming. We show that the class of autoreversible processes, previously introduced in Marin and Rossi (Proceedings of the IEEE 21st international symposium on modeling, analysis and simulation of computer and telecommunication systems MASCOTS, pp. 151–160, 2013), is strictly contained in the class of λρ-reversible chains

Prediction of multiple overshoots in shear stress during fast flows of bidisperse polymer melts

We present a differential constitutive model of stress relaxation in polydisperse linear polymer melts and solutions that contains contributions from reptation, contour-length fluctuations, and chain stretching. The predictions of the model during fast start-up and steady shear flows of polymer melts are in accord with experimental observations. Moreover, in accordance with reported experimental literature (Osaki et al. in J Polym Sci B Polym Phys 38:2043–2050, 2000), the model predicts, for a range of shear rates, two overshoots in shear stress during start-up of steady shear flows of bidisperse polymer melts having components with widely separated molar masses. Two overshoots result only when the stretch or Rouse relaxation time of the higher molar mass component is longer than the terminal relaxation time of the lower molar mass component. The “first overshoot” is the first to appear with increasing shear rate and occurs as a result of the stretching of longer chains. Transient stretching of the short chains is responsible for the early time second overshoot. The model predictions in steady and transitional extensional flows are also remarkable for both monodisperse and bidisperse polymer solutions. The computationally efficient differential model can be used to predict rheology of commercial polydisperse polymer melts and solutions.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/45865/1/397_2005_Article_60.pd