Unexpected genetic differentiation between recently recolonized populations of a long‐lived and highly vagile marine mammal

Many species have been heavily exploited by man leading to local extirpations, yet few studies have attempted to unravel subsequent recolonization histories. This has led to a significant gap in our knowledge of the long-term effects of exploitation on the amount and structure of contemporary genetic variation, with important implications for conservation. The Antarctic fur seal provides an interesting case in point, having been virtually exterminated in the nineteenth century but subsequently staged a dramatic recovery to recolonize much of its original range. Consequently, we evaluated the hypothesis that South Georgia (SG), where a few million seals currently breed, was the main source of immigrants to other locations including Livingston Island (LI), by genotyping 366 individuals from these two populations at 17 microsatellite loci and sequencing a 263 bp fragment of the mitochondrial hypervariable region 1. Contrary to expectations, we found highly significant genetic differences at both types of marker, with 51% of LI individuals carrying haplotypes that were not observed in 246 animals from SG. Moreover, the youngest of three sequentially founded colonies at LI showed greater similarity to SG at mitochondrial DNA than microsatellites, implying temporal and sex-specific variation in recolonization. Our findings emphasize the importance of relict populations and provide insights into the mechanisms by which severely depleted populations can recover while maintaining surprisingly high levels of genetic diversity

Spatial and isotopic niche partitioning during winter in chinstrap and Adélie penguins from the South Shetland Islands

© The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosphere 6 (2015): art125, doi:10.1890/ES14-00287.1.Closely related species with similar ecological requirements should exhibit segregation along spatial, temporal, or trophic niche axes to limit the degree of competitive overlap. For migratory marine organisms like seabirds, assessing such overlap during the non-breeding period is difficult because of long-distance dispersal to potentially diffuse foraging habitats. Miniaturization of geolocation devices and advances in stable isotope analysis (SIA), however, provide a robust toolset to quantitatively track the movements and foraging niches of wide ranging marine animals throughout much of their annual cycle. We used light-based geolocation tags and analyzed stable carbon and nitrogen isotopes from tail feathers to simultaneously characterize winter movements, habitat utilization, and overlap of spatial and isotopic niches of migratory chinstrap (Pygoscelis antarctica) and Adélie (P. adeliae) penguins during the austral winter of 2012. Chinstrap penguins exhibited a higher diversity of movements and occupied portions of the Southern Ocean from 138° W to 30° W within a narrow latitudinal band centered on 60° S. In contrast, all tracked Adélie penguins exhibited smaller-scale movements into the Weddell Sea and then generally along a counter-clockwise path as winter advanced. Inter-specific overlap during the non-breeding season was low except during the months immediately adjacent to the summer breeding season. Intra-specific overlap by chinstraps from adjacent breeding colonies was higher throughout the winter. Spatial segregation appears to be the primary mechanism to maintain inter- and intra-specific niche separation during the non-breeding season for chinstrap and Adélie penguins. Despite low spatial overlap, however, the data do suggest that a narrow pelagic corridor in the southern Scotia Sea hosted both chinstrap and Adélie penguins for most months of the year. Shared occupancy and similar isotopic signatures of the penguins in that region suggests that the potential for inter-specific competition persists during the winter months. Finally, we note that SIA was able to discriminate eastward versus westward migrations in penguins, suggesting that SIA of tail feathers may provide useful information on population-level distribution patterns for future studies.Funds for the GLS tags were provided by the National Marine Sanctuary Foundation. Additional support for this project was provided by a Woods Hole Oceanographic Devonshire Scholarship as well as funding from the Ocean Life Institute and SeaWorld Bush Gardens Conservation Fund to MJP

Time trends and trophic transfer of polybrominated diphenylethers (PBDEs) in Antarctic biota

Polybrominated diphenyl ethers (PBDEs) are “emerged” contaminants that were produced and used as flame retardants in numerous consumer and industrial applications for decades until banned. They remain ubiquitously present in the environment today. Here, a unique set of \u3e200 biotic samples from the Antarctic was analyzed for PBDEs, including phytoplankton, krill, fish, and fur seal milk, spanning several sampling seasons over 14 years. PBDE-47 and -99 were the dominant congeners determined in all samples, constituting \u3e60% of total PBDEs. A temporal trend was observed for ∑7PBDE concentrations in fur seal milk, where concentrations significantly increased (R2 = 0.57, p \u3c 0.05) over time (2000–2014). Results for krill and phytoplankton also suggested increasing PBDE concentrations over time. Trends of PBDEs in fur seal milk of individual seals sampled 1 or more years apart showed no clear temporal trends. Overall, there was no indication of PBDEs decreasing in Antarctic biota yet, whereas numerous studies have reported decreasing trends in the northern hemisphere. Similar PBDE concentrations in perinatal versus nonperinatal milk implied the importance of local PBDE sources for bioaccumulation. These results indicate the need for continued assessment of contaminant trends, such as PBDEs, and their replacements, in Antarctica

Oceanic Controls on the Mass Balance of Wilkins Ice Shelf, Antarctica

Several Antarctic Peninsula (AP) ice shelves have lost significant fractions of their volume over the past decades, coincident with rapid regional climate change. Wilkins Ice Shelf (WIS), on the western side of the AP, is the most recent, experiencing a sequence of large calving events in 2008 and 2009. We analyze the mass balance for WIS for the period 1992-2008 and find that the averaged rate of ice-shelf thinning was similar to 0.8 m a(-1), driven by a mean basal melt rate of \u3c w(b)\u3e = 1.3 +/- 0.4 m a(-1). Interannual variability was large, associated with changes in both surface mass accumulation and \u3c w(b)\u3e. Basal melt rate declined significantly around 2000 from 1.8 +/- 0.4 m a(-1) for 1992-2000 to similar to 0.75 +/- 0.55 m a(-1) for 2001-2008; the latter value corresponding to approximately steady-state ice-shelf mass. Observations of ocean temperature T obtained during 2007-2009 by instrumented seals reveal a cold, deep halo of Winter Water (WW; T approximate to - 1.6 degrees C) surrounding WIS. The base of the WW in the halo is similar to 170 m, approximately the mean ice draft for WIS. We hypothesize that the transition in \u3c w(b)\u3e in 2000 was caused by a small perturbation (similar to 10-20 m) in the relative depths of the ice base and the bottom of the WW layer in the halo. We conclude that basal melting of thin ice shelves like WIS is very sensitive to upper-ocean and coastal processes that act on shorter time and space scales than those affecting basal melting of thicker West Antarctic ice shelves such as George VI and Pine Island Glacier

Genetic diversity and demographic history of the leopard seal: A Southern Ocean top predator

Leopard seals (Hydrurga leptonyx) are top predators that can exert substantial top-down control of their Antarctic prey species. However, population trends and genetic diversity of leopard seals remain understudied, limiting our understanding of their ecological role. We investigated the genetic diversity, effective population size and demographic history of leopard seals to provide fundamental data that contextualizes their predatory influence on Antarctic ecosystems. Ninety leopard seals were sampled from the northern Antarctic Peninsula during the austral summers of 2008–2019 and a 405bp segment of the mitochondrial control region was sequenced for each individual. We uncovered moderate levels of nucleotide (π = 0.013) and haplotype (Hd = 0.96) diversity, and the effective population size was estimated at around 24,000 individuals (NE = 24,376; 95% CI: 16,876–33,126). Consistent with findings from other ice-breeding pinnipeds, Bayesian skyline analysis also revealed evidence for population expansion during the last glacial maximum, suggesting that historical population growth may have been boosted by an increase in the abundance of sea ice. Although leopard seals can be found in warmer, sub-Antarctic locations, the species’ core habitat is centered on the Antarctic, making it inherently vulnerable to the loss of sea ice habitat due to climate change. Therefore, detailed assessments of past and present leopard seal population trends are needed to inform policies for Antarctic ecosystems

Complex regional pain syndrome: advances in epidemiology, pathophysiology, diagnosis, and treatment.

Complex regional pain syndrome (CRPS) is a rare pain disorder that usually occurs in a limb after trauma. The features of this disorder include severe pain and sensory, autonomic, motor, and trophic abnormalities. Research from the past decade has offered new insights into CRPS epidemiology, pathophysiology, diagnosis, and treatment. Early identification of individuals at high risk of CRPS is improving, with several risk factors established and some others identified in prospective studies during the past 5 years. Better understanding of the pathophysiological mechanisms of CRPS has led to its classification as a chronic primary pain disorder, and subtypes of CRPS have been updated. Procedures for diagnosis have also been clarified. Although effective treatment of CRPS remains a challenge, evidence-based integrated management approaches provide new opportunities to improve patient care. Further advances in diagnosis and treatment of CRPS will require coordinated, international multicentre initiatives

Financing Direct Democracy: Revisiting the Research on Campaign Spending and Citizen Initiatives

The conventional view in the direct democracy literature is that spending against a measure is more effective than spending in favor of a measure, but the empirical results underlying this conclusion have been questioned by recent research. We argue that the conventional finding is driven by the endogenous nature of campaign spending: initiative proponents spend more when their ballot measure is likely to fail. We address this endogeneity by using an instrumental variables approach to analyze a comprehensive dataset of ballot propositions in California from 1976 to 2004. We find that both support and opposition spending on citizen initiatives have strong, statistically significant, and countervailing effects. We confirm this finding by looking at time series data from early polling on a subset of these measures. Both analyses show that spending in favor of citizen initiatives substantially increases their chances of passage, just as opposition spending decreases this likelihood

Seasonal and ocean basin-scale assessment of amino acid δ15N trends in a Southern Ocean marine predator

The Southern Ocean exhibits substantial spatio-temporal variation in biogeochemical processes that shape interactions and productivity across food webs. Stable isotopes in marine predators provide an opportunity to capture such variations, yet few studies have accounted for variability in the isotopic baseline when interpreting predator isotope values. Using bulk δ15N and δ13C values and the δ15N values of amino acids (AAs) of blood from female Antarctic fur seals (AFSs) Arctocephalus gazella, we investigated spatial and seasonal variation in baseline δ15N (δ15Nbaseline) values across 3 Southern Ocean basins (Indian, Pacific and Atlantic) to facilitate robust comparison of consumer trophic ecology. We detected spatial and seasonal differences in δ15Nbaseline values across the basins, using the source AAs phenylalanine (Phe) and lysine (Lys), consistent with the latitudinal gradient of AFS colonies and seasonal changes in seal foraging movement. The δ15N values of source AAs from Marion Island and Cape Shirreff were representative of particulate organic matter δ15N values in the Indian and southwest Atlantic sector, respectively, whereas more complex patterns were observed in the Atlantic sector around Bird Island. Variations in bulk δ15N values can also be attributed to changes in AFS diet, with females foraging in the Atlantic and Pacific targeting higher trophic level prey in winter. Trophic position estimation using Phe and leucine (Leu) suggested that females encompass more than 2 trophic levels. Our study highlights the utility of using Lys alongside Phe to assess seasonal and ocean basin-level variations in the isotopic baseline and Leu/Phe for AFS trophic position estimation

RAD sequencing and a hybrid Antarctic fur seal genome assembly reveal rapidly decaying linkage disequilibrium, global population structure and evidence for inbreeding

Recent advances in high throughput sequencing have transformed the study of wild organisms by facilitating the generation of high quality genome assemblies and dense genetic marker datasets. These resources have the potential to significantly advance our understanding of diverse phenomena at the level of species, populations and individuals, ranging from patterns of synteny through rates of linkage disequilibrium (LD) decay and population structure to individual inbreeding. Consequently, we used PacBio sequencing to refine an existing Antarctic fur seal (Arctocephalus gazella) genome assembly and genotyped 83 individuals from six populations using restriction site associated DNA (RAD) sequencing. The resulting hybrid genome comprised 6,169 scaffolds with an N50 of 6.21 Mb and provided clear evidence for the conservation of large chromosomal segments between the fur seal and dog (Canis lupus familiaris). Focusing on the most extensively sampled population of South Georgia, we found that LD decayed rapidly, reaching the background level by around 400 kb, consistent with other vertebrates but at odds with the notion that fur seals experienced a strong historical bottleneck. We also found evidence for population structuring, with four main Antarctic island groups being resolved. Finally, appreciable variance in individual inbreeding could be detected, reflecting the strong polygyny and site fidelity of the species. Overall, our study contributes important resources for future genomic studies of fur seals and other pinnipeds while also providing a clear example of how high throughput sequencing can generate diverse biological insights at multiple levels of organization

Updated Three-Stage Model for the Peopling of the Americas

Background: We re-assess support for our three stage model for the peopling of the Americas in light of a recent report that identified nine non-Native American mitochondrial genome sequences that should not have been included in our initial analysis. Removal of these sequences results in the elimination of an early (i.e.,40,000 years ago) expansion signal we had proposed for the proto-Amerind population. Methodology/Findings: Bayesian skyline plot analysis of a new dataset of Native American mitochondrial coding genomes confirms the absence of an early expansion signal for the proto-Amerind population and allows us to reduce the variation around our estimate of the New World founder population size. In addition, genetic variants that define New World founder haplogroups are used to estimate the amount of time required between divergence of proto-Amerinds from the Asian gene pool and expansion into the New World. Conclusions/Significance: The period of population isolation required for the generation of New World mitochondrial founder haplogroup-defining genetic variants makes the existence of three stages of colonization a logical conclusion. Thus, our three stage model remains an important and useful working hypothesis for researchers interested in the peopling of th