A CONSTANS-like gene candidate that could explain most of the genetic variation for flowering date in Medicago truncatula

Flowering is a critical period during a plant’s life cycle, and thus the identification and characterization of genes involved in flowering date control are of great importance in agronomy, breeding, population genetics and ecology. The model species Medicago truncatula can be used to detect genes explaining the variation for flowering date, which could also explain this variation in legume crops. The objective of this study was to identify the most promising candidate gene explaining a major quantitative trait locus (QTL) for flowering date previously found in three M. truncatula mapping populations. Fine mapping and bioinformatic analysis of bacterial artificial chromosomes (BACs) in the confidence interval of the QTL showed six genes potentially involved in the control of flowering date. Two of these genes, similar to CONSTANS and FT of Arabidopsis thaliana respectively, had genomic mutations when compared to the parents. The transcriptomic study of these genes by semi-quantitative RT-PCR in leaves and flowers sampled at two developmental stages showed that the CONSTANS-like gene was differentially expressed in the two parental lines. A gene belonging to the CONSTANS-like family could explain the major QTL for flowering date segregating in M. truncatula progenies

Differential patterns of reactive oxygen species and antioxidative mechanisms during atrazine injury and sucrose-induced tolerance in Arabidopsis thaliana plantlets.

http://www.biomedcentral.com/1471-2229/9/28International audienceBackground: Besides being essential for plant structure and metabolism, soluble carbohydrates play important roles in stress responses. Sucrose has been shown to confer to Arabidopsis seedlings a high level of tolerance to the herbicide atrazine, which causes reactive oxygen species (ROS) production and oxidative stress. The effects of atrazine and of exogenous sucrose on ROS patterns and ROS-scavenging systems were studied. Simultaneous analysis of ROS contents, expression of ROS-related genes and activities of ROS-scavenging enzymes gave an integrative view of physiological state and detoxifying potential under conditions of sensitivity or tolerance. Results: Toxicity of atrazine could be related to inefficient activation of singlet oxygen (1O2) quenching pathways leading to 1O2 accumulation. Atrazine treatment also increased hydrogen peroxide (H2O2) content, while reducing gene expressions and enzymatic activities related to two major H2O2-detoxification pathways. Conversely, sucrose-protected plantlets in the presence of atrazine exhibited efficient 1O2 quenching, low 1O2 accumulation and active H2O2-detoxifying systems. Conclusion: In conclusion, sucrose protection was in part due to activation of specific ROS scavenging systems with consequent reduction of oxidative damages. Importance of ROS combination and potential interferences of sucrose, xenobiotic and ROS signalling pathways are discussed

Nitrogen partitioning and remobilization in relation to leaf senescence, grain yield and grain nitrogen concentration in wheat cultivars

Our objective was to investigate the determinants of genetic variation in N accumulation, N partitioning and N remobilization to the grain post-flowering and associations with flag-leaf senescence, grain yield and grain N% in 16 wheat cultivars grown under high N (HN) and low N (LN) conditions in the UK and France. Overall, cultivars ranged in leaf lamina N accumulation at anthesis from 5.32 to 8.03 g N m−2 at HN and from 2.69 to 3.62 g N m−2 at LN, and for the stem-and leaf-sheath from 5.45 to 7.25 g N m−2 at HN and from 2.55 to 3.41 g N m−2 at LN (P < 0.001). Cultivars ranged in N partitioning index (proportion of above-ground N in the crop component) at anthesis for the leaf lamina from 0.37 to 0.42 at HN and 0.34 to 0.40 at LN; and for the stem-and leaf-sheath from 0.39 to 0.43 at HN and from 0.35 to 0.41 at LN (P < 0.001). The amount of leaf lamina N remobilized post-anthesis was negatively associated with the duration of post-anthesis flag-leaf senescence amongst cultivars in all experiments under HN. In general, it was difficult to separate genetic differences in lamina N remobilization from those in lamina N accumulation at anthesis. Genetic variation in grain yield and grain N% (through N dilution effects) appeared to be mainly influenced by pre-anthesis N accumulation rather than post-anthesis N remobilization under high N conditions and under milder N stress (Sutton Bonington LN). Where N stress was increased (Clermont Ferrand LN), there was some evidence that lamina N remobilization was a determinant of genetic variation in grain N% although not of grain yield. Our results suggested that selection for lamina N accumulation at anthesis and lamina N remobilization post-anthesis may have value in breeding programmes aimed at optimizing senescence duration and improving grain yield, N-use efficiency and grain N% of wheat

Genetic and ecophysiological analysis of the deviation from the protein content - grain yield relationship in common wheat (Triticum aestivum L.)

Le rendement en grains (Rdt) et la teneur en protéines (%Prot) sont deux cibles majeures dans les programmes de sélection variétale chez le blé car ces caractères contribuent à la valeur économique de cette culture. Malheureusement, leur amélioration simultanée est empêchée par la relation négative %Prot-Rdt. Il a été montré que l’écart à cette relation (“Grain Protein Deviation”, GPD) est déterminé en partie génétiquement et serait utile pour modifier cette relation négative mais ses bases biologiques restent mal comprises à ce jour. Nous avons montré que le GPD est principalement relié à la variabilité génétique pour l’absorption d’azote post-floraison (ABSN) dans les conditions agro-climatiques du Nord-Ouest de l’Europe. Nous proposons que la variabilité génétique pour l’accès à l’azote du sol (architecture et fonctionnement racinaire) ou pour la régulation de ABSN par le statut azoté (transport et assimilation de l’azote) pourrait expliquer le GPD. Etant donné que le retardement de la sénescence durant la période post-floraison peut résulter en une augmentation de ABSN, nous avons analysé les déterminants génétique des relations entre durée de sénescence des feuilles après floraison et Rdt ou %Prot, observées au niveau phénotypique, en utilisant des données acquises sur une population de cartographie de blé cultivée au sein d’un large réseau expérimental. Une association positive entre durée de sénescence des feuilles après floraison et %Prot ou Rdt a été observée selon les environnements étudiés. Nous faisons l’hypothèse que l’impact d’un retardement de la sénescence des feuilles après floraison pourrait être modulé selon la disponibilité en azote durant cette période, ce qui conduirait à modifier la relation %Prot-Rdt selon les environnements étudiés. Enfin, des données obtenues sur trois populations de cartographie cultivées dans un large réseau expérimental ont permis de suggérer, après méta-analyse de QTL, des régions génomiques potentiellement utiles en sélection pour améliorer la %Prot sans diminuer le Rdt. Ceci a permis de mettre en avant des régions situées sur les chromosomes 2A et 3B. En particulier, la région située sur le 2A pourrait être reliée à la présence d’un gène codant pour une glutamine synthétase chloroplastique qui a été associée à la variabilité génétique pour %Prot chez le blé tendre dans une étude antérieure.Grain yield (GY) and grain protein concentration (GPC) are two major targets in wheat breeding programs as these traits contribute to the economic value of the wheat crop. Unfortunately, their simultaneous improvement is hampered by the genetic negative GPC-GY relationship. It has been shown that the deviation to this relationship (“Grain Protein Deviation”, GPD) has a genetic basis and might be useful to shift this negative relationship but its biological bases remain unclear. GPD was shown to be mainly related to the genetic variability for post-anthesis nitrogen (N) uptake (PANU) in the North-West European agro-climatic conditions. We proposed that the genetic variability for the access to N in the soil (root architecture and functioning) or for the regulation of PANU by the plant N status (N transport and assimilation) could explain GPD. As delaying leaf senescence during the post-anthesis period might result in increasing PANU, we analysed the genetic determinants of the phenotypic relationships between leaf senescence duration after anthesis and GPC or GY using data obtained on a wheat mapping population grown in a large mutli-environment trial network. A positive association was found between leaf senescence duration and GPC or GY depending onthe environment. We suggested that the impact of delaying leaf senescence after anthesis on GY or GPC might be modulated by the N availability during the post-anthesis period and would lead to modify the GPC-GY relationship depending on the considered environments. Finally, data obtained on three connected mapping populations grown in a large mutli-environment trial network were used to suggest by meta-QTL analysis potential genomic regions possibly useful in wheat breeding to improve GPC without reducing GY. This put forward genomic regions located on the 2A and 3B chromosomes as potentially interesting targets to improve GPC. In particular, the region on the 2A might be related to a chloroplastic glutamine synthetase gene previously shown to be associated with genetic variability for GPC in bread wheat

Analyse génétique et écophysiologique de l'écart à la relation teneur en protéines - rendement en grains chez le blé tendre (Triticum aestivum L.)

Grain yield (GY) and grain protein concentration (GPC) are two major targets in wheat breeding programs as these traits contribute to the economic value of the wheat crop. Unfortunately, their simultaneous improvement is hampered by the genetic negative GPC-GY relationship. It has been shown that the deviation to this relationship (“Grain Protein Deviation”, GPD) has a genetic basis and might be useful to shift this negative relationship but its biological bases remain unclear. GPD was shown to be mainly related to the genetic variability for post-anthesis nitrogen (N) uptake (PANU) in the North-West European agro-climatic conditions. We proposed that the genetic variability for the access to N in the soil (root architecture and functioning) or for the regulation of PANU by the plant N status (N transport and assimilation) could explain GPD. As delaying leaf senescence during the post-anthesis period might result in increasing PANU, we analysed the genetic determinants of the phenotypic relationships between leaf senescence duration after anthesis and GPC or GY using data obtained on a wheat mapping population grown in a large mutli-environment trial network. A positive association was found between leaf senescence duration and GPC or GY depending onthe environment. We suggested that the impact of delaying leaf senescence after anthesis on GY or GPC might be modulated by the N availability during the post-anthesis period and would lead to modify the GPC-GY relationship depending on the considered environments. Finally, data obtained on three connected mapping populations grown in a large mutli-environment trial network were used to suggest by meta-QTL analysis potential genomic regions possibly useful in wheat breeding to improve GPC without reducing GY. This put forward genomic regions located on the 2A and 3B chromosomes as potentially interesting targets to improve GPC. In particular, the region on the 2A might be related to a chloroplastic glutamine synthetase gene previously shown to be associated with genetic variability for GPC in bread wheat.Le rendement en grains (Rdt) et la teneur en protéines (%Prot) sont deux cibles majeures dans les programmes de sélection variétale chez le blé car ces caractères contribuent à la valeur économique de cette culture. Malheureusement, leur amélioration simultanée est empêchée par la relation négative %Prot-Rdt. Il a été montré que l’écart à cette relation (“Grain Protein Deviation”, GPD) est déterminé en partie génétiquement et serait utile pour modifier cette relation négative mais ses bases biologiques restent mal comprises à ce jour. Nous avons montré que le GPD est principalement relié à la variabilité génétique pour l’absorption d’azote post-floraison (ABSN) dans les conditions agro-climatiques du Nord-Ouest de l’Europe. Nous proposons que la variabilité génétique pour l’accès à l’azote du sol (architecture et fonctionnement racinaire) ou pour la régulation de ABSN par le statut azoté (transport et assimilation de l’azote) pourrait expliquer le GPD. Etant donné que le retardement de la sénescence durant la période post-floraison peut résulter en une augmentation de ABSN, nous avons analysé les déterminants génétique des relations entre durée de sénescence des feuilles après floraison et Rdt ou %Prot, observées au niveau phénotypique, en utilisant des données acquises sur une population de cartographie de blé cultivée au sein d’un large réseau expérimental. Une association positive entre durée de sénescence des feuilles après floraison et %Prot ou Rdt a été observée selon les environnements étudiés. Nous faisons l’hypothèse que l’impact d’un retardement de la sénescence des feuilles après floraison pourrait être modulé selon la disponibilité en azote durant cette période, ce qui conduirait à modifier la relation %Prot-Rdt selon les environnements étudiés. Enfin, des données obtenues sur trois populations de cartographie cultivées dans un large réseau expérimental ont permis de suggérer, après méta-analyse de QTL, des régions génomiques potentiellement utiles en sélection pour améliorer la %Prot sans diminuer le Rdt. Ceci a permis de mettre en avant des régions situées sur les chromosomes 2A et 3B. En particulier, la région située sur le 2A pourrait être reliée à la présence d’un gène codant pour une glutamine synthétase chloroplastique qui a été associée à la variabilité génétique pour %Prot chez le blé tendre dans une étude antérieure

GS-qualité -Établissement d'un modèle de sélection génomique pour la qualité boulangère des blés-FSOV 2014 N

Projet FSOV GS-qualité 2014 NGS-qualité -Établissement d'un modèle de sélection génomique pour la qualité boulangère des blés-FSOV 2014

Differential patterns of reactive oxygen species and antioxidative mechanisms during atrazine injury and sucrose-induced tolerance in <it>Arabidopsis thaliana </it>plantlets

Abstract Background Besides being essential for plant structure and metabolism, soluble carbohydrates play important roles in stress responses. Sucrose has been shown to confer to Arabidopsis seedlings a high level of tolerance to the herbicide atrazine, which causes reactive oxygen species (ROS) production and oxidative stress. The effects of atrazine and of exogenous sucrose on ROS patterns and ROS-scavenging systems were studied. Simultaneous analysis of ROS contents, expression of ROS-related genes and activities of ROS-scavenging enzymes gave an integrative view of physiological state and detoxifying potential under conditions of sensitivity or tolerance. Results Toxicity of atrazine could be related to inefficient activation of singlet oxygen (1O2) quenching pathways leading to 1O2 accumulation. Atrazine treatment also increased hydrogen peroxide (H2O2) content, while reducing gene expressions and enzymatic activities related to two major H2O2-detoxification pathways. Conversely, sucrose-protected plantlets in the presence of atrazine exhibited efficient 1O2 quenching, low 1O2 accumulation and active H2O2-detoxifying systems. Conclusion In conclusion, sucrose protection was in part due to activation of specific ROS scavenging systems with consequent reduction of oxidative damages. Importance of ROS combination and potential interferences of sucrose, xenobiotic and ROS signalling pathways are discussed.</p

Progresser en protéines sans pénaliser le rendement: la notion de GPD

Progresser en protéines sans pénaliser le rendement: la notion de GPD. Azote et innovation : Quels leviers pour concilier productivité, qualité et autonomie des systèmes céréaliers

A simple approach to predict growth stages in winter wheat (<em>Triticum aestivum</em> L.) combining prediction of a crop model and marker based prediction of the deviation to a reference cultivar: A case study in France

International audiencePredicting wheat growth stages using ecophysiological models is of particular interest as it allows anticipating important agricultural managements. Numerous ecophysiological models exist but they need cultivar-specific parameterization, which is often costly and time consuming. The work presented here proposes a simple approach to predict wheat growth stages using the allelic composition of wheat cultivars. It relies on using the prediction of a modified version of the ARCWHEAT model for a well parameterized reference cultivar (Soissons) and the marker-based predicted deviation in days to the reference cultivar. First, the deviations to the reference cultivar Soissons for the beginning of stem elongation (87.30) and heading date (delta Z55) were calculated for a large panel of cultivars. Analysis of variance showed prominent genetic effects for delta Z30 and delta Z55 and possible genotype x environment interactions (G x E) for delta Z30. Genotypic means 6230 and delta Z55 were used in association genetics revealing 90 and 83 genetic markers associated to these traits, respectively. Multiple linear regression models predicting delta Z30 using 11 genetic markers (R-2= 76%) or delta Z55 using 17 markers (R-2 =85%) were obtained by a stepwise procedure. Marker PPD-D1 had the largest impact in both models. Finally, marker-based deviations added to the prediction for the reference cultivar Soissons allowed predicting Z30 or Z55 for a large independent validation dataset. The root mean square error of prediction for Z30 and Z55 using the approach proposed in this paper (6.8 and 4.7 days, respectively) was comparable to the one obtained using the conventional approach with cultivar-specific parameters values (6.5 and 4.1, respectively). The models proposed in this paper appeared sufficient in order to predict growth stages of cultivars which cannot be parameterized such as new cultivars coming out on the market. Moreover, genetic markers involved in the multiple linear regression models predicting delta Z30 and delta Z55 may provide interesting candidates to unravel new genes determining earliness in winter wheat

Predictions of heading date in bread wheat (Triticum aestivum L.) using QTL-based parameters of an ecophysiological model

International audiencePrediction of wheat phenology facilitates the selection of cultivars with specific adaptations to a particular environment. However, while QTL analysis for heading date can identify major genes controlling phenology, the results are limited to the environments and genotypes tested. Moreover, while ecophysiological models allow accurate predictions in new environments, they may require substantial phenotypic data to parameterize each genotype. Also, the model parameters are rarely related to all underlying genes, and all the possible allelic combinations that could be obtained by breeding cannot be tested with models. In this study, a QTL-based model is proposed to predict heading date in bread wheat (Triticum aestivum L.). Two parameters of an ecophysiological model (V sat and P base, representing genotype vernalization requirements and photoperiod sensitivity, respectively) were optimized for 210 genotypes grown in 10 contrasting location × sowing date combinations. Multiple linear regression models predicting V sat and P base with 11 and 12 associated genetic markers accounted for 71 and 68% of the variance of these parameters, respectively. QTL-based V sat and P base estimates were able to predict heading date of an independent validation data set (88 genotypes in six location × sowing date combinations) with a root mean square error of prediction of 5 to 8.6 days, explaining 48 to 63% of the variation for heading date. The QTL-based model proposed in this study may be used for agronomic purposes and to assist breeders in suggesting locally adapted ideotypes for wheat phenology