Decoding Earth’s plate tectonic history using sparse geochemical data

Accurately mapping plate boundary types and locations through time is essential for understanding the evolution of the plate-mantle system and the exchange of material between the solid Earth and surface environments. However, the complexity of the Earth system and the cryptic nature of the geological record make it difficult to discriminate tectonic environments through deep time. Here we present a new method for identifying tectonic paleo-environments on Earth through a data mining approach using global geochemical data. We first fingerprint a variety of present-day tectonic environments utilising up to 136 geochemical data attributes in any available combination. A total of 38301 geochemical analyses from basalts aged from 5–0 Ma together with a well-established plate reconstruction model are used to construct a suite of discriminatory models for the first order tectonic environments of subduction and mid-ocean ridge as distinct from intraplate hotspot oceanic environments, identifying 41, 35, and 39 key discriminatory geochemical attributes, respectively. After training and validation, our model is applied to a global geochemical database of 1547 basalt samples of unknown tectonic origin aged between 1000–410 Ma, a relatively ill-constrained period of Earth's evolution following the breakup of the Rodinia supercontinent, producing 56 unique global tectonic environment predictions throughout the Neoproterozoic and Early Paleozoic. Predictions are used to discriminate between three alternative published Rodinia configuration models, identifying the model demonstrating the closest spatio-temporal consistency with the basalt record, and emphasizing the importance of integrating geochemical data into plate reconstructions. Our approach offers an extensible framework for constructing full-plate, deep-time reconstructions capable of assimilating a broad range of geochemical and geological observations, enabling next generation Earth system models

Oceanic microplate formation records the onset of India-Eurasia collision

Mapping of seafloor tectonic fabric in the Indian Ocean, using high-resolution satellite-derived vertical gravity gradient data, reveals an extinct Pacific-style oceanic microplate ('Mammerickx Microplate') west of the Ninetyeast Ridge. It is one of the first Pacific-style microplates to be mapped outside the Pacific basin, suggesting that geophysical conditions during formation probably resembled those that have dominated at eastern Pacific ridges. The microplate formed at the Indian-Antarctic ridge and is bordered by an extinct ridge in the north and pseudofault in the south, whose conjugate is located north of the Kerguelen Plateau. Independent microplate rotation is indicated by asymmetric pseudofaults and rotated abyssal hill fabric, also seen in multibeam data. Magnetic anomaly picks and age estimates calculated from published spreading rates suggest formation during chron 21o (~47.3 Ma). Plate reorganizations can trigger ridge propagation and microplate development, and we propose that Mammerickx Microplate formation is linked with the India-Eurasia collision (initial 'soft' collision). The collision altered the stress regime at the Indian-Antarctic ridge, leading to a change in segmentation and ridge propagation from an establishing transform. Fast Indian-Antarctic spreading that preceded microplate formation, and Kerguelen Plume activity, may have facilitated ridge propagation via the production of thin and weak lithosphere; however both factors had been present for tens of millions of years and are therefore unlikely to have triggered the event. Prior to the collision, the combination of fast spreading and plume activity was responsible for the production of a wide region of undulate seafloor to the north of the extinct ridge and 'W' shaped lineations that record back and forth ridge propagation. Microplate formation provides a precise means of dating the onset of the India-Eurasia collision, and is completely independent of and complementary to timing constraints derived from continental geology or convergence histories. © 2015 Elsevier B.V.K.J.M. and R.D.M. were supported by ARC Discovery Project DP130101946 . The CryoSat-2 data were provided by the European Space Agency, and NASA/CNES provided data from the Jason-1 altimeter. This research was supported by the National Science Foundation ( OCE-1128801 ), the Office of Naval Research ( N00014-12-1-0111 ), the National Geospatial-Intelligence Agency ( HM0177-13-1-0008 ) and ConocoPhillips . Version 23 of the global grids of gravity anomaly and VGG can be downloaded from the following ftp site ftp://topex.ucsd.edu/pub/global_grav_1min . All figures were produced using the Generic Mapping Tools ( GMT ) software ( Wessel et al., 2013 ). The open-source plate reconstruction software GPlates ( Boyden et al., 2011 ) was used to compute the distance from the Kerguelen Plume to the initiation point of ridge propagation using different absolute reference frames, and to produce the VGG raster reconstruction in Fig. 3 . Magnetic anomaly picks were accessed from the compilation of Seton et al. (2014) from The Global Seafloor Fabric and Magnetic Lineation Data Base Project website ( http://www.soest.hawaii.edu/PT/GSFML/ ). We thank the editor An Yin and two anonymous reviewers for their thoughtful and constructive comments that improved the manuscript. Appendix

Decoding Earth’s plate tectonic history using sparse geochemical data

Accurately mapping plate boundary types and locations through time is essential for understanding the evolution of the plate-mantle system and the exchange of material between the solid Earth and surface environments. However, the complexity of the Earth system and the cryptic nature of the geological record make it difficult to discriminate tectonic environments through deep time. Here we present a new method for identifying tectonic paleo-environments on Earth through a data mining approach using global geochemical data. We first fingerprint a variety of present-day tectonic environments utilising up to 136 geochemical data attributes in any available combination. A total of 38301 geochemical analyses from basalts aged from 5–0 Ma together with a well-established plate reconstruction model are used to construct a suite of discriminatory models for the first order tectonic environments of subduction and mid-ocean ridge as distinct from intraplate hotspot oceanic environments, identifying 41, 35, and 39 key discriminatory geochemical attributes, respectively. After training and validation, our model is applied to a global geochemical database of 1547 basalt samples of unknown tectonic origin aged between 1000–410 Ma, a relatively ill-constrained period of Earth's evolution following the breakup of the Rodinia supercontinent, producing 56 unique global tectonic environment predictions throughout the Neoproterozoic and Early Paleozoic. Predictions are used to discriminate between three alternative published Rodinia configuration models, identifying the model demonstrating the closest spatio-temporal consistency with the basalt record, and emphasizing the importance of integrating geochemical data into plate reconstructions. Our approach offers an extensible framework for constructing full-plate, deep-time reconstructions capable of assimilating a broad range of geochemical and geological observations, enabling next generation Earth system models

Melanesian back-arc basin and arc development: Constraints from the eastern Coral Sea

The eastern Coral Sea is a poorly explored area at the north-eastern corner of the Australian Tectonic Plate, where interaction between the Pacific and Australian plate boundaries, and accretion of the world's largest submarine plateau – the Ontong Java Plateau – has resulted in a complex assemblage of back-arc basins, island arcs, continental plateaus and volcanic products. This study combines new and existing magnetic anomaly profiles, seafloor fabric from swath bathymetry data, Ar–Ar dating of E-MORB basalts, palaeontological dating of carbonate sediments, and plate modelling from the eastern Coral Sea. Our results constrain commencement of the opening of the Santa Cruz Basin and South Rennell Trough to c. 48 Ma and termination at 25–28 Ma. Simultaneous opening of the Melanesian Basin/Solomon Sea further north suggests that a single > 2000 km long back-arc basin, with at least one triple junction existed landward of the Melanesian subduction zone from Eocene–Oligocene times. The cessation of spreading corresponds with a reorganisation of the plate boundaries in the area and the proposed initial soft collision of the Ontong Java Plateau. The correlation between back-arc basin cessation and a widespread plate reorganisation event suggests that back-arc basins may be used as markers for both local and global plate boundary changes.We thank the Captain and crew of R/V Southern Surveyor and Australia's Marine National Facility (MNF) for the success of voyage SS2012_V06. Mineral separation was done by John Simes and Belinda Smith Lyttle. We thank Hugh Davies for his attempts to locate old Solomon Sea dredge samples and Geoscience Australia and New Caledonia agencies for voyage support. We acknowledge funding from the Australian Research Council through grants DP0987713 and FT130101564 (MS), FL0992245 (SEW), IH130200012 (SZ) and DP130101946 (KJM). Support from the New Zealand Government through core funding to GNS Science (NM) is also acknowledged. We thank Robert Holm and an anonymous reviewer for their comments, which improved the quality of the manuscript

The influence of carbonate platform interactions with subduction zone volcanism on palaeo-atmospheric CO_2 since the Devonian

The CO_2 liberated along subduction zones through intrusive/extrusive magmatic activity and the resulting active and diffuse outgassing influences global atmospheric CO_2. However, when melts derived from subduction zones intersect buried carbonate platforms, decarbonation reactions may cause the contribution to atmospheric CO_2 to be far greater than segments of the active margin that lacks buried carbon-rich rocks and carbonate platforms. This study investigates the contribution of carbonate-intersecting subduction zones (CISZs) to palaeo-atmospheric CO_2 levels over the past 410 million years by integrating a plate motion and plate boundary evolution model with carbonate platform development through time. Our model of carbonate platform development has the potential to capture a broader range of degassing mechanisms than approaches that only account for continental arcs. Continuous and cross-wavelet analyses as well as wavelet coherence are used to evaluate trends between the evolving lengths of carbonate-intersecting subduction zones, non-carbonate-intersecting subduction zones and global subduction zones, and are examined for periodic, linked behaviour with the proxy CO_2 record between 410 Ma and the present. Wavelet analysis reveals significant linked periodic behaviour between 60 and 40 Ma, when CISZ lengths are relatively high and are correlated with peaks in palaeo-atmospheric CO_2, characterised by a 32–48 Myr periodicity and a  ∼  8–12 Myr lag of CO_2 peaks following CISZ length peaks. The linked behaviour suggests that the relative abundance of CISZs played a role in affecting global climate during the Palaeogene. In the 200–100 Ma period, peaks in CISZ lengths align with peaks in palaeo-atmospheric CO_2, but CISZ lengths alone cannot be determined as the cause of a warmer Cretaceous–Jurassic climate. Nevertheless, across the majority of the Phanerozoic, feedback mechanisms between the geosphere, atmosphere and biosphere likely played dominant roles in modulating climate. Our modelled subduction zone lengths and carbonate-intersecting subduction zone lengths approximate magmatic activity through time, and can be used as input into fully coupled models of CO_2 flux between deep and shallow carbon reservoirs

Attrition among Human Immunodeficiency Virus (HIV)- Infected Patients Initiating Antiretroviral Therapy in China, 2003–2010

BACKGROUND: Mortality and morbidity from HIV have dramatically decreased in both high- and low-income countries. However, some patients may not benefit from combination antiretroviral therapy (cART) because of inadequate access to HIV care, including attrition after care initiation. METHODOLOGY/PRINCIPAL FINDINGS: The study population included all HIV-infected patients receiving cART through the Chinese National Free Antiretroviral Treatment Program from 1 January 2003 to 31 December 2010 (n = 106,542). We evaluated retention in HIV care and used multivariable Cox proportional hazard models to identify independent factors predictive of attrition. The cumulative probability of attrition from cART initiation was 9% at 12 months, 13% at 18 months, 16% at 24 months and 24% at 60 months. A number of factors were associated with attrition, including younger age, male gender, and being single or divorced. Patients with higher CD4 cell counts at cART initiation were more likely to drop out of HIV care. The proportion of patients remaining in HIV care increased in more recent calendar years and among patients who initiated modern cART regimens. CONCLUSIONS/SIGNIFICANCE: Retention in HIV care is essential for optimizing individual and public health outcomes. Attrition, even the degree observed in our study, can lead to premature morbidity and mortality, and possibly affect further transmission of HIV and HIV resistant drug variants. Effective strategies to promote retention in HIV care programs are needed. In China these strategies may include focusing particularly on younger male patients and those with higher CD4 cell counts at therapy initiation

Emerging roles of ATF2 and the dynamic AP1 network in cancer

Cooperation among transcription factors is central for their ability to execute specific transcriptional programmes. The AP1 complex exemplifies a network of transcription factors that function in unison under normal circumstances and during the course of tumour development and progression. This Perspective summarizes our current understanding of the changes in members of the AP1 complex and the role of ATF2 as part of this complex in tumorigenesis.Fil: Lopez Bergami, Pablo Roberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Biología y Medicina Experimental (i); Argentina; ArgentinaFil: Lau, Eric . Burnham Institute for Medical Research; Estados UnidosFil: Ronai, Zeev . Burnham Institute for Medical Research; Estados Unido

Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19

Background: We previously reported that impaired type I IFN activity, due to inborn errors of TLR3- and TLR7-dependent type I interferon (IFN) immunity or to autoantibodies against type I IFN, account for 15–20% of cases of life-threatening COVID-19 in unvaccinated patients. Therefore, the determinants of life-threatening COVID-19 remain to be identified in ~ 80% of cases. Methods: We report here a genome-wide rare variant burden association analysis in 3269 unvaccinated patients with life-threatening COVID-19, and 1373 unvaccinated SARS-CoV-2-infected individuals without pneumonia. Among the 928 patients tested for autoantibodies against type I IFN, a quarter (234) were positive and were excluded. Results: No gene reached genome-wide significance. Under a recessive model, the most significant gene with at-risk variants was TLR7, with an OR of 27.68 (95%CI 1.5–528.7, P = 1.1 × 10−4) for biochemically loss-of-function (bLOF) variants. We replicated the enrichment in rare predicted LOF (pLOF) variants at 13 influenza susceptibility loci involved in TLR3-dependent type I IFN immunity (OR = 3.70[95%CI 1.3–8.2], P = 2.1 × 10−4). This enrichment was further strengthened by (1) adding the recently reported TYK2 and TLR7 COVID-19 loci, particularly under a recessive model (OR = 19.65[95%CI 2.1–2635.4], P = 3.4 × 10−3), and (2) considering as pLOF branchpoint variants with potentially strong impacts on splicing among the 15 loci (OR = 4.40[9%CI 2.3–8.4], P = 7.7 × 10−8). Finally, the patients with pLOF/bLOF variants at these 15 loci were significantly younger (mean age [SD] = 43.3 [20.3] years) than the other patients (56.0 [17.3] years; P = 1.68 × 10−5). Conclusions: Rare variants of TLR3- and TLR7-dependent type I IFN immunity genes can underlie life-threatening COVID-19, particularly with recessive inheritance, in patients under 60 years old