4 research outputs found
RNAnorm: RNA-seq data normalization in Python
Added
Provide an example of gene lengths file in the README.rst
Fixed
Fix fit methods to match sklearn signature
Fix LibrarySize to always return np.array in private functions
Fix get_norm_factors to follow the set_output config
Remove leftovers of as_frame parameterIf you use this software, please cite it as below
RNAnorm: RNA-seq data normalization in Python
<ul>
<li>Add support for Python 3.12</li>
</ul>If you use this software, please cite it as below
The Role of Initial Oligomers in Amyloid Fibril Formation by Human Stefin B
Oligomers are commonly observed intermediates at the initial stages of amyloid fibril formation. They are toxic to neurons and cause decrease in neural transmission and long-term potentiation. We describe an in vitro study of the initial steps in amyloid fibril formation by human stefin B, which proved to be a good model system. Due to relative stability of the initial oligomers of stefin B, electrospray ionization mass spectrometry (ESI MS) could be applied in addition to size exclusion chromatography (SEC). These two techniques enabled us to separate and detect distinguished oligomers from the monomers: dimers, trimers, tetramers, up to decamers. The amyloid fibril formation process was followed at different pH and temperatures, including such conditions where the process was slow enough to detect the initial oligomeric species at the very beginning of the lag phase and those at the end of the lag phase. Taking into account the results of the lower-order oligomers transformations early in the process, we were able to propose an improved model for the stefin B fibril formation