Photosynthetic gas exchange and chlorophyll in Bambara groundnut (Vigna subterranea l. Verdc.) subjected to water deficit

The study evaluated the response of two Bambara groundnut (Vigna subterranea L. Verdc.) landraces sourced  from contrasting environments to periods of water deficit initiated at vegetative stage. The two landraces  AHM-753 and Bogor, from Namibia and Indonesia, respectively, were grown in pots and irrigation was withheld 30 days after sowing in stressed group while the control plants were fully watered. The responses were studied  by measurements of relative water content (RWC), photosynthetic gas exchange, and SPAD  chlorophyll. RWCand gas exchange parameters were found to decrease in stressed plants. Significant  (P<0.001) decrease in SPAD chlorophyll concentration was seen only in Bogor landrace. The results showed a possible drought avoidance strategy in Bambara  groundnut in response to water deficit. The results pointed a greater tolerance to the imposed drought in the landrace AHM-753 compared to Bogor suggesting that the origin of the landrace and the environment it is adapted to determine its response to water deficit.Keywords:Bambara groundnut;Chlorophyll; Gas exchange; Photosynthesis, Water defici

Device–to-Device Association Algorithm for Optimal Neighbour Selection and Channel Sharing in 5G Cellular Networks

The integration of device-to-device (D2D) communication in 5G cellular networks has generated the possibility of multiple transmission modes in a single cell. This has motivated scholars to investigate different mode selection and D2D association algorithms that guarantee the selection of proper transmission mode. However, the complexity of algorithms and tractability of devices in the cell are still remarkably challenging. This paper, therefore, presents a utility based D2D association algorithm that ensures optimal neighbour selection by using numerical linear algebra to minimize computational complexity. Simulation results show that the minimum utility based D2D association increases the expected values of attached devices by 6% and 10% compared to the relative distance and maximum utility based D2D associations, respectively. Alternatively, the throughput expectation increases by 2.5% and 4% compared to the relative distance and maximum utility based D2D associations, respectively. Keywords: Cooperative Communication; D2D, Mode Selection; Relay-assisted; Traffic Overloa

Breeding in bambara groundnut (Vigna subterranea (L.) Verdc.): strategic considerations

Bambara groundnut (Vigna subterranea (L.) Verdc.) has a large number of landraces throughout Africa where small-scale farmers have preserved its genetic diversity on-farm. To date, the full genetic diversity of the crop remains largely unexploited. Until recently bambara groundnut never received any appreciable research effort, especially for its genetic improvement. Until then, only selection breeding was practised in which existing landraces were evaluated and their seeds multiplied. However, no new combinations resulting from hybridisation had ever been produced. Recently, collaborative research efforts involving partners from Africa and Europe have produced the first crosses of bambara groundnut. The creation of these crosses is a significant scientific and practical achievement and opens up the possibility of breeding true varieties of this crop. This paper shows how different strategies have been combined to establish the basis of a strategic breeding programme in bambara groundnut. The paper also illustrates the use of landraces in the bambara groundnut breeding programme, as an example of the contribution that landraces can make to increasing productivity in marginal environments and the conservation of a crop's genetic resources on-farm.African Journal of Biotechnology Vol. 4 (6), pp. 463-471, 200

Expression of Insoluble Influenza Neuraminidase Type 1 (NA1) Protein in Tobacco

The avian influenza virus, particularly H5N1 strain, is highly virulent to poultry and mankind. Several expression systems, like yeast, baculovirus and mammalian cells, have been adopted to produce vaccine candidate for this lethal disease. The present research aimed at developing a recombinant vaccine candidate, neuraminidase type 1 (NA1), for the Malaysia isolate of H5N1 in Nicotiana benthamiana. The NA1 gene was fused directly in-frame in cowpea mosaic virus (CPMV)-based pEAQ-HT vector with C-terminal polyhistidine-tag incorporated to ease the subsequent purification step. The expression of the NA1 gene in tobacco was confirmed at RNA and protein levels at 6 days post-infiltration (Dpi). From the insoluble fraction of the protein, a recombinant glycosylated NA1 protein with a molecular weight of ~56 kDa was immunogenically detected by a specific anti-NA polyclonal antibody. We report for the first time the insolubility of the plant-made NA1 protein where a native sequence was used for its expression. This study signifies the necessity of the use of optimised sequences for expression work and provides great opportunity for the exploration of plant-manufactured NA1 protein as vaccine candidate

The Ecorat project: development of ecologically-based rodent management for the southern African region

Mulungu, L.S., Belmain, S.R., Dlamini, N., Eiseb, S., Kirsten, F., Mahlaba, T., Makundi, R., Malebane, P., Von Maltitz, E., Massawe, A., Monadjem, A., Taylor, P., Tutjavi, V

Yield stability of East African highland cooking banana ‘Matooke’ hybrids

East African banana (Musa sp.) breeding efforts have focused mainly on enhancing ‘Matooke’ productivity through the development of high-yielding, pathogen-resistant cultivars with adequate stability to contribute to regional food security. Before a breeding program can recommend promising cultivars for release, they must pass the sensory screens; be evaluated in the target population environments; and the data analyzed for yield, adaptability, and stability. Twenty-four primary and secondary triploid hybrids [NARITA (N)] derived from ‘Matooke’ bananas, six triploid local ‘Matooke’ cultivars, and one exotic cultivar were evaluated for their yield, adaptability, and stability across the East African region at three highland sites in Uganda’s western and central regions, as well as at three sites in Tanzania’s northeastern and southern highlands regions, from 2016–19. A randomized complete block design with four replicates was used for multisite trials. The mixed-model restricted maximum likelihood/best linear unbiased prediction approach, along with additive main effect multiplicative interaction model biplots, were used to dissect and visualize genotype-byenvironment patterns. Following the likelihood ratio test, both genotype and interaction effects were highly significant, confirming the influence of genotype and site heterogeneity for selecting specific and broadly adapted cultivars. N23 had the greatest yield across all sites associated with adaptability and stability, outperforming the overall mean yield of all genotypes by 34.2%. In Tanzania, N27 (second), N7 (third), N18 (fourth), N4 (fifth), N12 (sixth), and N13 (seventh); and in Uganda, N17 (second), N18 (third), N2 (fourth), N8 (fifth), N13 (sixth), N12 (seventh), N4 (eighth), and N24 (ninth) demonstrated good adaptability and stability, as well as high yield. Furthermore, the fungal pathogen Pseudocercospora fijiensis had no significant effect (P > 0.05) on yield, stability, and adaptability of the hybrids. As a result, they can be introduced into areas where black leaf streak constrains banana production significantly and threatens farmers’ livelihoods. The average site yield potential ranged from 9.7 to 24.3 t⋅ha–1 per year. The best discriminating sites for testing breeding clones were Lyamungo in Tanzania and Sendusu in Uganda. Hence, these testing sites are recommended as ideal examples of locations for selecting superior genotypes

Integrating genetic maps in bambara groundnut [Vigna subterranea (L) Verdc.] and their syntenic relationships among closely related legumes

Background Bambara groundnut [Vigna subterranea (L) Verdc.] is an indigenous legume crop grown mainly in subsistence and small-scale agriculture in sub-Saharan Africa for its nutritious seeds and its tolerance to drought and poor soils. Given that the lack of ex ante sequence is often a bottleneck in marker-assisted crop breeding for minor and underutilised crops, we demonstrate the use of limited genetic information and resources developed within species, but linked to the well characterised common bean (Phaseolus vulgaris) genome sequence and the partially annotated closely related species; adzuki bean (Vigna angularis) and mung bean (Vigna radiata). From these comparisons we identify conserved synteny blocks corresponding to the Linkage Groups (LGs) in bambara groundnut genetic maps and evaluate the potential to identify genes in conserved syntenic locations in a sequenced genome that underlie a QTL position in the underutilised crop genome. Results Two individual intraspecific linkage maps consisting of DArTseq markers were constructed in two bambara groundnut (2n = 2x = 22) segregating populations: 1) The genetic map of Population IA was derived from F2 lines (n = 263; IITA686 x Ankpa4) and covered 1,395.2 cM across 11 linkage groups; 2) The genetic map of Population TD was derived from F3 lines (n = 71; Tiga Nicuru x DipC) and covered 1,376.7 cM across 11 linkage groups. A total of 96 DArTseq markers from an initial pool of 142 pre-selected common markers were used. These were not only polymorphic in both populations but also each marker could be located using the unique sequence tag (at selected stringency) onto the common bean, adzuki bean and mung bean genomes, thus allowing the sequenced genomes to be used as an initial ‘pseudo’ physical map for bambara groundnut. A good correspondence was observed at the macro synteny level, particularly to the common bean genome. A test using the QTL location of an agronomic trait in one of the bambara groundnut maps allowed the corresponding flanking positions to be identified in common bean, mung bean and adzuki bean, demonstrating the possibility of identifying potential candidate genes underlying traits of interest through the conserved syntenic physical location of QTL in the well annotated genomes of closely related species. Conclusions The approach of adding pre-selected common markers in both populations before genetic map construction has provided a translational framework for potential identification of candidate genes underlying a QTL of trait of interest in bambara groundnut by linking the positions of known genetic effects within the underutilised species to the physical maps of other well-annotated legume species, without the need for an existing whole genome sequence of the study species. Identifying the conserved synteny between underutilised species without complete genome sequences and the genomes of major crops and model species with genetic and trait data is an important step in the translation of resources and information from major crop and model species into the minor crop species. Such minor crops will be required to play an important role in future agriculture under the effects of climate change