Kinetics of formic acid dehydration on Pt electrodes by time-resolved ATR-SEIRAS

ACKNOWLEDGMENT L.P.-M. acknowledges a doctoral scholarship within the Leverhulme Centre for Doctoral Training in Sustainable Production of Chemicals and Materials (Grant DS-2017-073).Peer reviewedPublisher PD

Reactive and inhibiting species in the electrocatalytic oxidation of glycerol on gold : A study combining in-situ visible reflectance and ATR-SEIRAS

Acknowledgements: The support of the Leverhulme Trust through the Doctoral Scholarship Scheme [DS-2017-073] is gratefully acknowledged.Peer reviewedPostprin

Análisis Comparativo del Diseño Estructural de un Edificio de Concreto Armado de 4 Niveles, por Método Clásico y los Programas Etabs y Cypecad, Carapongo Chosica, Lima 2019

La investigación se da con la finalidad realizar el análisis comparativo del uso de programas ETABS y CypeCAD, y el método clásico en el diseño de las estructuras de edificios de concreto armado de 4 niveles ubicado en Carapongo Chosica, el cual se desarrollará a través del plano de diseño arquitectónico definido de dicho proyecto. El método de investigación del presente trabajo es no experimental, ya que se obtendrá datos según los programas obtenidos y por el método clásico. Esperando lograr el objetivo del presente trabajo en las variaciones de los resultados obtenidos en cada programa utilizado en el proyecto de investigación. El análisis y el diseño se ha realizado considerando las normas del Reglamento Nacional de Edificaciones (RNE) según las normas NTE E.020 cargas, NTE E.030 diseño Sismorresistente, E.050 Suelos y cimentaciones y NTE E.060 Concreto Armado. Para el análisis comparativo se ha obtenido el estudio de suelos y capacidad portante de la urbanizadora, se usará los programas de diseño ETABS y CypeCAD para la respuesta y el análisis respectivo y el método clásico. El procedimiento de análisis de las estructuras se realizará mediante la utilización de programas ETABS versión 2016 y el programa CypeCAD versión 2017, como también se realizará el método clásico para sí obtener resultados, analizar y comparar, de esta manera se considerarán los lineamientos planteados en el reglamento vigentes según normas antes mencionadas. Con los datos obtenidos, los resultados de los diseños se realizarán el análisis comparativo de las diferentes alternativas con las que se logró determinar las ventajas y desventajas de utilizar en una u otra alternativa según resultado por cada programa de diseño de estructuras. Finalmente se logró concluir que, con el programa CYPECAD tiene ventajas en cuanto a la variedad herramientas que incluyen en el paquete de este programa, además de reducir el tiempo en el modelamiento del diseño estructural, sin embargo, con el programa ETABS el dominio para el diseño es más directo que el antes mencionado para la obtención del diseño estructural en edificaciones

Search for H alpha emitters in Galaxy Clusters with Tunable Filters

The studies of the evolution of galaxies in Galaxy Clusters have as a traditional complication the difficulty in establishing cluster membership of those sources detected in the field of view. The determination of spectroscopic redshifts involves long exposure times when it is needed to reach the cluster peripherical regions of/or clusters at moderately large redshifts, while photometric redshifts often present uncertainties too large to offer significant conclusions. The mapping of the cluster of galaxies with narrow band tunable filters makes it possible to reach large redshifts intervals with an accuracy high enough to establish the source membership of those presenting emission/absorption lines easily identifiable, as H alpha. Moreover, the wavelength scan can include other lines as [NII], [OIII] or $H_{\beta}$ allowing to distinguish those sources with strong stellar formation activity and those with an active galactic nuclei. All this makes it possible to estimate the stellar formation rate of the galaxies observed. This, together with ancillary data in other wavelengths may lead to a good estimation of the stellar formation histories. It will shed new light over the galaxy evolution in clusters and will improve our understanding of galaxy evolution, especially in the outer cluster regions, usually less studied and with significant unexploited data that can not be correctly interpreted without redshift determination.Comment: 4 pages, 2 figures. "Highlights of Spanish Astrophysics V", Proceedings of the VIII Scientific Meeting of the Spanish Astronomical Society (SEA) held in Santander, 7-11 July, 200

Panels and models for accurate prediction of tumor mutation burden in tumor samples

Immune checkpoint blockade (ICB) is becoming standard-of-care in many types of human malignancies, but patient selection is still imperfect. Tumor mutation burden (TMB) is being evaluated as a biomarker for ICB in clinical trials, but most of the sequencing panels used to estimate it are inadequately designed. Here, we present a bioinformatics-based method to select panels and mathematical models for accurate TMB prediction. Our method is based on tumor-specific, forward-step selection of genes, generation of panels using a linear regression algorithm, and rigorous internal and external validation comparing predicted with experimental TMB. As a result, we propose cancer-specific panels for 14 malignancies which can offer reliable, clinically relevant estimates of TMBs. Our work facilitates a better prediction of TMB that can improve the selection of patients for ICB therapy.Fil: Martinez Perez, Elizabeth. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Bioquímicas de Buenos Aires. Fundación Instituto Leloir. Instituto de Investigaciones Bioquímicas de Buenos Aires; ArgentinaFil: Molina Vila, Miguel Angel. Hospital Universitario Quirón Dexeus; EspañaFil: Marino, Cristina Ester. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Bioquímicas de Buenos Aires. Fundación Instituto Leloir. Instituto de Investigaciones Bioquímicas de Buenos Aires; Argentin

Identification of ovule and seed genes from Citrus clementina

[EN] Seedlessness is a highly desirable trait in fresh fruit. Citrus varieties, such as Clementine mandarin and other related species, show parthenocarpic fruit development without seeds due to self-incompatibility. In spite of that, these fruits frequently contain seeds as a result of cross-pollination by insects with compatible pollen from other citrus cultivars grown nearby. To solve this problem using a biotechnological approach we aim at the destruction of ovules and/or seeds by directing the expression of a toxic gene using the promoter of an ovule and/or seed specific gene. With the purpose of isolating this kind of genes we constructed two cDNA libraries from ovules and seeds at different developmental stages of the Clementine mandarin (Citrus clementina cv. Clemenules). A total of 1,014 ESTs from the ovule library and 1,042 ESTs from the seed library were generated, with a novelty percentage of 27% and 36% among the Spanish Citrus Functional Genomic Project (CFGP) ESTs database, respectively. Quantitative PCR analysis confirmed nearly specific expression in ovule and/or seed of two genes, TRANSPARENT TESTA16 (CcTT16) and TRANSPARENT TESTA7 (CcTT7). Expression of these two genes is restricted to early seed development, and is localized in the embryo sac and endothelium. The promoters of those genes may be useful to genetically engineer citrus species to avoid seed formation in fruits of commercial varieties.The authors thank Dr. L. Navarro and J. Juarez, from the Instituto Valenciano de Investigaciones Agrarias (Generalitat Valenciana), for the use of the Clementine orchard and Fortune pollen; Dr. J Forment and the Genomics Facility at the IBMCP for sequence analysis and maintenance of to the CFGP database; and Drs. F Tadeo and J Carbonell for critical reading of the manuscript. This work was supported by grants from the Conselleria de Agricultura, Pesca y Alimentacion (Generalitat Valenciana) and Spanish Ministerio de Ciencia y Tecnologia (research grant GEN2001-4885-C05). A.G-L. received a PhD fellowship from the Conselleria de Agricultura, Pesca y Alimentacion.García Lor, A.; Garcia Martinez, JL.; Perez Amador, MA. (2012). Identification of ovule and seed genes from Citrus clementina. Tree Genetics and Genomes. 8(2):227-235. doi:10.1007/s11295-011-0435-xS22723582Al-Shahrour F, Diaz-Uriarte R, Dopazo J (2005) Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information. Bioinformatics 21:2988–2993Al-Shahrour F, Minguez P, Tarraga J, Montaner D, Alloza E, Vaquerizas JMM, Conde L, Blaschke C, Vera J, Dopazo J (2006) BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Nucleic Acids Res 34:W472–W476Alos E, Cercos M, Rodrigo MJ, Zacarias L, Talon M (2006) Regulation of color break in citrus fruits. Changes in pigment profiling and gene expression induced by gibberellins and nitrate, two ripening retardants. J Agric Food Chem 54:4888–4895Bugos RC, Chiang VL, Zhang XH, Campbell ER, Podila GK, Campbell WH (1995) RNA isolation from plant tissues recalcitrant to extraction in guanidine. Biotechniques 19:734–737Costantini E, Landi L, Silvestroni O, Pandolfini T, Spena A, Mezzetti B (2007) Auxin synthesis-encoding transgene enhances grape fecundity. Plant Physiol 143:1689–1694Debeaujon I, Nesi N, Perez P, Devic M, Grandjean O, Caboche M, Lepiniec L (2003) Proanthocyanidin-accumulating cells in Arabidopsis testa: regulation of differentiation and role in seed development. Plant Cell 15:2514–2531Dorcey E, Urbez C, Blazquez MA, Carbonell J, Perez-Amador MA (2009) Fertilization-dependent auxin response in ovules triggers fruit development through the modulation of gibberellin metabolism in Arabidopsis. Plant J 58:318–332Debeaujon I, Peeters AJ, Léon-Kloosterziel KM, Koornneef M (2001) The TRANSPARENT TESTA12 gene of Arabidopsis encodes a multidrug secondary transporter-like protein required for flavonoid sequestration in vacuoles of the seed coat endothelium. Plant Cell 13:853–571Forment J, Gadea J, Huerta L, Abizanda L, Agusti J, Alamar S, Alos E, Andres F, Arribas R, Beltran JP, Berbel A, Blazquez MA, Brumos J, Canas LA, Cercos M, Colmenero-Flores JM, Conesa A, Estables B, Gandia M, Garcia-Martinez JL, Gimeno J, Gisbert A, Gomez G, Gonzalez-Candelas L, Granell A, Guerra J, Lafuente MT, Madueno F, Marcos JF, Marques MC, Martinez F, Martinez-Godoy MA, Miralles S, Moreno P, Navarro L, Pallas V, Perez-Amador MA, Perez-Valle J, Pons C, Rodrigo I, Rodriguez PL, Royo C, Serrano R, Soler G, Tadeo F, Talon M, Terol J, Trenor M, Vaello L, Vicente O, Vidal C, Zacarias L, Conejero V (2005) Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies. Plant Mol Biol 57:375–391Forment J, Gilabert F, Robles A, Conejero V, Nuez F, Blanca JM (2008) EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration. BMC Bioinformatics 9:5Fos M, Nuez F, Garcia-Martinez JL (2000) The gene pat-2, which induces natural parthenocarpy, alters the gibberellin content in unpollinated tomato ovaries. Plant Physiol 122:471–480Fos M, Proaño K, Nuez F, Garcia-Martinez JL (2001) Role of gibberellins in parthenocarpic fruit development induced by the genetic system pat-3/pat-4 in tomato. Physiol Plant 111:545–550Hashimoto JG, Beadles-Bohling AS, Wiren KM (2004) Comparison of RiboGreen and 18S rRNA quantitation for normalizing real-time RT-PCR expression analysis. Biotechniques 36:54–60Haughn G, Chaudhury A (2005) Genetic analysis of seed coat development in Arabidopsis. Trends Plant Sci 10:472–477Hartley RW (1988) Barnase and barstar. Expression of its cloned inhibitor permits expression of a cloned ribonuclease. J Mol Biol 202:913–915Jackson DP (1992) In situ hybridization in plants. In: Bowles DJ, Gurr SJ, Pherenson M (eds) Molecular plant pathology: a practical approach. Oxford University Press, Oxford, UK, pp 163–174Koltunow AM (1993) Isolation and construction of genes to control seed production in Citrus. In: Hyashi T, Omura M, Scott NS (eds) Techniques on gene diagnosis and breeding. Fruit Tree Research Station, Tsukuba, Japan, pp 101–108Koltunow AM, Soltys K, Nito N, Mcclure S (1995) Anther, ovule, seed and nucellar embryo development in Citrus sinensis cv Valencia. Can J Bot 73:1567–1582Koltunow AM, Brennan P, Bond JE, Barker SJ (1998) Evaluation of genes to reduce seed size in Arabidopsis and tobacco and their application to Citrus. Mol Breeding 4:235–251Le BH, Cheng C, Bui AQ, Wagmaister JA, Henry KF, Pelletier J, Kwong L, Belmonte M, Kirkbride R, Horvath S, Drews GN, Fischer RL, Okamuro JK, Harada JJ, Goldberg RB (2010) Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors. Proc Natl Acad Sci USA 107:8063–8070Li DD, Shi W, Deng XX (2002) Agrobacterium-mediated transformation of embryogenic calluses of Ponkan mandarin and the regeneration of plants containing the chimeric ribonuclease gene. Plant Cell Rep 21:153–156Marques MC, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, Perez-Amador MA (2009) A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus. BMC Genomics 10:428Mezzetti B, Landi L, Pandolfini T, Spena A (2004) The DefH9-iaaM auxin-synthesizing gene increases plant fecundity and fruit production in strawberry and raspberry. BMC Biotechnology 4:4Nesi N, Debeaujon I, Jond C, Stewart AJ, Jenkins GI, Caboche M, Lepiniec L (2002) The TRANSPARENT TESTA16 locus encodes the ARABIDOPSIS BSISTER MADS domain protein and is required for proper development and pigmentation of the seed coat. Plant Cell 14:2463–2479Olimpieri I, Siligato F, Caccia R, Mariotti L, Ceccarelli N, Soressi GP, Mazzucato A (2007) Tomato fruit-set driven by pollination or by the parthenocarpic fruit allele are mediated by transcriptionally regulated gibberellin biosynthesis. Planta 226:877–888Peer AW, Brown DE, Tague BW, Muday GK, Taiz L, Murphy AS (2001) Flavonoid accumulation patterns of transparent testa mutants of Arabidopsis. Plant Physiol 126:536–548Rommens CM, Haring MA, Swords K, Davies HV, Belknap WR (2007) The intragenic approach as a new extension to traditional plant breeding. Trends Plant Sci 12:397–403Rotino GL, Acciarri N, Sabatini E, Mennella G, Scalzo RL, Maestrelli A, Molesini B, Pandolfini T, Scalzo J, Mezzetti B, Spena A (2005) Open field trial of genetically modified parthenocarpic tomato: seedlessness and fruit quality. BMC Biotechnol 5:32Schoenbohm C, Martens S, Eder C, Forkmann G, Weisshaar B (2000) Identification of the Arabidopsis thaliana flavonoid 3′-hydroxylase gene and functional expression of the encoded P450 enzyme. Biol Chem 381:749–753Schwabe WW, Mills JJ (1981) Hormones and parthenocarpic fruit set: a literature survey. Hort Abstr 51:661–698Singh DP, Filardo FF, Storey R, Jermakow AM, Yamaguchi S, Swain SM (2010) Overexpression of a gibberellin inactivation gene alters seed development, KNOX gene expression, and plant development in Arabidopsis. Physiol Plant 138:74–90Talon M, Zacarias L, Primo-Millo E (1992) Gibberellins and parthenocarpic ability in developing ovaries of seedless mandarins. Plant Physiol 99:1575–1581Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W (2004) GENEVESTIGATOR: Arabidopsis microarray database and analysis toolbox. Plant Physiol 136:2621–2632Zhulidov PA, Bogdanova EA, Shcheglov AS, Vagner LL, Khaspekov GL, Kozhemyako VB, Matz MV, Meleshkevitch E, Moroz LL, Lukyanov SA, Shagin DA (2004) Simple cDNA normalization using Kamchatka crab duplex-specific nuclease. Nucleic Acids Res 32:e3

The Central role of KNG1 gene as a genetic determinant of coagulation pathway-related traits: Exploring metaphenotypes

Traditional genetic studies of single traits may be unable to detect the pleiotropic effects involved in complex diseases. To detect the correlation that exists between several phenotypes involved in the same biological process, we introduce an original methodology to analyze sets of correlated phenotypes involved in the coagulation cascade in genome-wide association studies. The methodology consists of a two-stage process. First, we define new phenotypic meta-variables (linear combinations of the original phenotypes), named metaphenotypes, by applying Independent Component Analysis for the multivariate analysis of correlated phenotypes (i.e. the levels of coagulation pathway–related proteins). The resulting metaphenotypes integrate the information regarding the underlying biological process (i.e. thrombus/clot formation). Secondly, we take advantage of a family based Genome Wide Association Study to identify genetic elements influencing these metaphenotypes and consequently thrombosis risk. Our study utilized data from the GAIT Project (Genetic Analysis of Idiopathic Thrombophilia). We obtained 15 metaphenotypes, which showed significant heritabilities, ranging from 0.2 to 0.7. These results indicate the importance of genetic factors in the variability of these traits. We found 4 metaphenotypes that showed significant associations with SNPs. The most relevant were those mapped in a region near the HRG, FETUB and KNG1 genes. Our results are provocative since they show that the KNG1 locus plays a central role as a genetic determinant of the entire coagulation pathway and thrombus/clot formation. Integrating data from multiple correlated measurements through metaphenotypes is a promising approach to elucidate the hidden genetic mechanisms underlying complex diseases.Postprint (published version

Relapses and obstetric outcomes in women with multiple sclerosis planning pregnancy

Abstract Objective To evaluate the effect of discontinuation of different disease-modifying therapies (DMTs) before pregnancy with respect to the occurrence of relapses and pregnancy outcomes. Methods Women with multiple sclerosis who desire to bear children were followed prospectively. Demographic data, clinical characteristics, and the information on the use of DMTs were collected. A multivariate analysis was used to assess the relationship between relapses and the prior use of different DMTs. Results The present study assessed 75 consecutive pregnancy plans (66 women), 65 of which resulted in pregnancy. The mean age of the participants was 32.1 ± 4.2 years, and the mean disease duration was 6.1 ± 4.2 years. No relapses before pregnancy were reported in the group of women who maintained their DMT until pregnancy confirmation, while 14 relapses were reported in 12/42 women (29%) who discontinued DMT before pregnancy. During pregnancy, patients on natalizumab or fingolimod before pregnancy had a higher rate of relapses. Most women restarted their previous DMT after delivery within the first trimester. The relapse rate in postpartum was 0.07. Conclusions Disease-modifying therapies received influences the risk of relapse and disease progression from women who are planning pregnancy. The risk of relapse during pregnancy was significantly higher in the group of women treated with natalizumab or fingolimod compared to the group of women treated with interferon beta or glatiramer acetate. The postpartum risk of relapses was lower than that found in previous reports

Theoretical insight into vibrational spectra of metal-water interfaces from density functional theory based molecular dynamics

Acknowledgements J. C. is grateful for funding support from the National Natural Science Foundation of China (Grants No. 21373166 and 21621091), and the Thousand Youth Talents Program of China.Peer reviewedPostprin