Dynamic prokaryotic communities in the dark western Mediterranean Sea

Dark ocean microbial dynamics are fundamental to understand ecosystem metabolism and ocean biogeochemical processes. Yet, the ecological response of deep ocean communities to environmental perturbations remains largely unknown. Temporal and spatial dynamics of the meso- and bathypelagic prokaryotic communities were assessed throughout a 2-year seasonal sampling across the western Mediterranean Sea. A common pattern of prokaryotic communities’ depth stratification was observed across the different regions and throughout the seasons. However, sporadic and drastic alterations of the community composition and diversity occurred either at specific water masses or throughout the aphotic zone and at a basin scale. Environmental changes resulted in a major increase in the abundance of rare or low abundant phylotypes and a profound change of the community composition. Our study evidences the temporal dynamism of dark ocean prokaryotic communities, exhibiting long periods of stability but also drastic changes, with implications in community metabolism and carbon fluxes. Taken together, the results highlight the importance of monitoring the temporal patterns of dark ocean prokaryotic communities.Versión del editor2,92

Bluefin tuna larval indices in the western Mediterranean, ecological and analytycal sources of uncertainity

The main objective of this study is to provide the knowledge to design adequate sensitivity analyses on the assessment models used for the Eastern stock of Bluefin tuna. We analyze how different configuration for the same environmental variable (temperature in the mixed layer depth) and different modeling approaches (nonlinear Delta-log,delta-gamma, tweedy and bayesian) affects to the variability of the larval indices of the Eastern bluefin tuna from data collected in the Balearic Sea (Western Mediterranean). We also investigate the effects on the index caused from having differences in the total sampled area among years. We used these results to interpolate larval index values in years with not standard larval surveys but with some ichthyoplankton surveys available, and to propose a “revised version” of the index providing parameters of uncertainty

Seasonal Niche Partitioning of Surface Temperate Open Ocean Prokaryotic Communities

Surface microbial communities are exposed to seasonally changing environmental conditions, resulting in recurring patterns of community composition. However, knowledge on temporal dynamics of open ocean microbial communities remains scarce. Seasonal patterns and associations of taxa and oligotypes from surface and chlorophyll maximum layers in the western Mediterranean Sea were studied over a 2-year period. Summer stratification versus winter mixing governed not only the prokaryotic community composition and diversity but also the temporal dynamics and co-occurrence association networks of oligotypes. Flavobacteriales, Rhodobacterales, SAR11, SAR86, and Synechococcales oligotypes exhibited contrasting seasonal dynamics, and consequently, specific microbial assemblages and potential inter-oligotype connections characterized the different seasons. In addition, oligotypes composition and dynamics differed between surface and deep chlorophyll maximum (DCM) prokaryotic communities, indicating depth-related environmental gradients as a major factor affecting association networks between closely related taxa. Taken together, the seasonal and depth specialization of oligotypes suggest temporal dynamics of community composition and metabolism, influencing ecosystem function and global biogeochemical cycles. Moreover, our results indicate highly specific associations between microbes, pointing to keystone ecotypes and fine-tuning of the microbes realized niche.En prens

Dynamics of actively dividing prokaryotes in the western Mediterranean Sea

Microbial community metabolism and functionality play a key role modulating global biogeochemical processes. However, the metabolic activities and contribution of actively growing prokaryotes to ecosystem energy fluxes remain underexplored. Here we describe the temporal and spatial dynamics of active prokaryotes in the different water masses of the Mediterranean Sea using a combination of bromodeoxyuridine labelling and 16S rRNA gene Illumina sequencing. Bulk and actively dividing prokaryotic communities were drastically different and depth stratified. Alteromonadales were rare in bulk communities (contributing 0.1% on average) but dominated the actively dividing community throughout the overall water column (28% on average). Moreover, temporal variability of actively dividing Alteromonadales oligotypes was evinced. SAR86, Actinomarinales and Rhodobacterales contributed on average 3–3.4% each to the bulk and 11, 8.4 and 8.5% to the actively dividing communities in the epipelagic zone, respectively. SAR11 and Nitrosopumilales contributed less to the actively dividing than to the bulk communities during all the study period. Noticeably, the large contribution of these two taxa to the total prokaryotic communities (23% SAR11 and 26% Nitrosopumilales), especially in the meso- and bathypelagic zones, results in important contributions to actively dividing communities (11% SAR11 and 12% Nitrosopumilales). The intense temporal and spatial variability of actively dividing communities revealed in this study strengthen the view of a highly dynamic deep ocean. Our results suggest that some rare or low abundant phylotypes from surface layers down to the deep sea can disproportionally contribute to the activity of the prokaryotic communities, exhibiting a more dynamic response to environmental changes than other abundant phylotypes, emphasizing the role they might have in community metabolism and biogeochemical processes.This research has been supported by RADMED-TRES (2015–2019) and ATHAPOC (CTM2014-54374-R) projects, funded by the Spanish Institute of Oceanography and the Spanish Ministry of Economy and Competitiveness, respectively. CM was supported by pre-doctoral FPI fellowship from Conselleria d’Innovació, Recerca i Turisme of the regional Government of the Balearic Islands, co-financed by the European Social Fund as part of the FSE 2014-2020 operational program.Postprin

Small fish eat smaller fish: A model of interaction strength in early life stages of two tuna species

Fish larvae are rarely a major driver of fish mortality, but tunas can produce large batches of larvae that rapidly develop the capacity to kill other fish. We combine a model for the killing potential from Atlantic bluefin tuna (BFT) larvae on larval albacore (ALB) with field observations at a major spawning ground. Both species spawn from June to August, but BFT has a narrow spawning peak at the beginning of the season that results in priority effects. Our model shows that, following a recent stock recovery, BFT larvae have increased their killing pressure, leaving areas of up to 1000 km2 with < 1% chance of ALB daily survival. Such increase in killing pressure suggests larval ALB has reduced chances to survive; yet in large areas with few BFT, other drivers of early survival prevail over BFT predation. This shows that strong predatory interactions can occur during larval stages in some fishes.En prensa3,38

Spawning site distribution of a bluefin tuna reduces jellyfish predation on early life stages

Bluefin tunas across the world migrate long distances to spawn in particularly warm and oligotrophic areas constrained by oceanographic fronts. The low abundance of predators in these areas increases survival chances of their early life stages, but its importance for choice of spawning habitat is unknown. Here, we use estimated clearance rates and data on spatial distributions of Atlantic bluefin tuna larvae Thunnus thynnus and metaephyrae of the jellyfish Pelagia noctiluca to quantify predation at a major spawning ground in the Mediterranean Sea. We found that high densities of P. noctiluca can rapidly deplete tuna eggs and preflexion larvae, but their patchy distribution and low spatial and temporal overlap results in overall low predation. The specific distribution of the spawning sites suggests that bluefin tunas may use local oceanography as cues to spawn outside areas with high predator densities.Postprint3,38

Experimental Zika Virus Infection in the Pregnant Common Marmoset Induces Spontaneous Fetal Loss and Neurodevelopmental Abnormalities.

During its most recent outbreak across the Americas, Zika virus (ZIKV) was surprisingly shown to cause fetal loss and congenital malformations in acutely and chronically infected pregnant women. However, understanding the underlying pathogenesis of ZIKV congenital disease has been hampered by a lack of relevant in vivo experimental models. Here we present a candidate New World monkey model of ZIKV infection in pregnant marmosets that faithfully recapitulates human disease. ZIKV inoculation at the human-equivalent of early gestation caused an asymptomatic seroconversion, induction of type I/II interferon-associated genes and proinflammatory cytokines, and persistent viremia and viruria. Spontaneous pregnancy loss was observed 16-18 days post-infection, with extensive active placental viral replication and fetal neurocellular disorganization similar to that seen in humans. These findings underscore the key role of the placenta as a conduit for fetal infection, and demonstrate the utility of marmosets as a highly relevant model for studying congenital ZIKV disease and pregnancy loss

Phytoplankton Community Structure Is Driven by Stratification in the Oligotrophic Mediterranean Sea

The phytoplankton community composition, structure, and biomass were investigated under stratified and oligotrophic conditions during summer for three consecutive years in the Mediterranean Sea. Our results reveal that the phytoplankton community structure was strongly influenced by vertical stratification. The thermocline separated two different phytoplankton communities in the two layers of the euphotic zone, characterized by different nutrient and light availability. Picoplankton dominated in terms of abundance and biomass at all the stations sampled and throughout the photic zone. However, the structure of the picoplanktonic community changed with depth, with Synechococcus and heterotrophic prokaryotes dominating in surface waters down to the base of the thermocline, and Prochlorococcus and picoeukaryotes contributing relatively more to the community in the deep chlorophyll maximum (DCM). Light and nutrient availability also influenced the communities at the DCM layer. Prochlorococcus prevailed in deeper DCM waters characterized by lower light intensities and higher picophytoplankton abundance was related to lower nutrient concentrations at the DCM. Picoeukaryotes were the major phytoplankton contributors to carbon biomass at surface (up to 80%) and at DCM (more than 40%). Besides, contrarily to the other phytoplankton groups, picoeukaryotes cell size progressively decreased with depth. Our research shows that stratification is a major factor determining the phytoplankton community structure; and underlines the role that picoeukaryotes might play in the carbon flux through the marine food web, with implications for the community metabolism and carbon fate in the ecosystem.En prens

RETROCALCULATED LARVAL ABUNDANCE INDEX OF ATLANTIC BLUEFIN TUNA IN THE WESTERN MEDITERRANEAN SEA, 2001-2020

This document presents the update of the bluefin tuna retrocalculated larval abundance indices from the Balearic archipelago (western Mediterranean). The index has been calculated following methods presented in 2020 (SCRS/2020/067) and 2021 (SCRS/2021/033). The abundance index shows an increasing trend with a maximum value in 2020. A previous version of the index (SCRS/P/2019/055) is also provided for comparison.En prensa

Improvement of the Seminal Characteristics in Rams Using Agri-Food By-Products Rich in Phytomelatonin

The aim of this study was to evaluate the effect of a phytomelatonin-rich diet, including by-products from the food industry, on ram sperm quality and seminal plasma composition. Melatonin content in several by-products before and after in vitro ruminal and abomasal digestion was determined by HPLC-ESI-MS/MS. Finally, 20% of a mix of grape pulp with pomegranate and tomato pomaces was included in the rams’ diet, constituting the phytomelatonin-rich diet. Feeding the rams with this diet resulted in an increase in seminal plasma melatonin levels compared with the control group (commercial diet) in the third month of the study. In addition, percentages higher than those in the control group of morphologically normal viable spermatozoa with a low content of reactive oxygen species were observed from the second month onwards. However, the antioxidant effect does not seem to be exerted through the modulation of the antioxidant enzymes since the analysis of the activities of catalase, glutathione reductase and glutathione peroxidase in seminal plasma revealed no significant differences between the two experimental groups. In conclusion, this study reveals, for the first time, that a phytomelatonin-rich diet can improve seminal characteristics in ram