Longitudinal virtual photons and the interference terms in ep collisions

The importance of the contributions of the longitudinally polarized virtual photon in ep collisions is investigated. We derive the factorization formulae for the unpolarized inclusive and semi-inclusive ep collisions in an arbitrary reference frame. The numerical calculations for the prompt photons production in the unpolarized Compton process (e p --> e gamma X) at the ep HERA collider are performed in the Born approximation. We studied various distributions in the ep centre-of-mass frame and found that the differential cross section for the longitudinally polarized intermediate photon and the term due to the interference between the longitudinal- and transverse- polarization states of the photon are small, i.e. below 10% of the cross section. Moreover, these two contributions almost cancel one another, leading to a stronger domination of the transversely polarized virtual photon, even for its large virtuality. Relevance of the resolved longitudinal photon in a jet production in DIS events at HERA is commented. A relatively large (about 30%) effect due to the longitudinal-transverse interference term was found in the azimuthal-angle distribution in the Breit frame.Comment: 20 pages, 8 figures, Late

New insights into the possible role of bacteriophages in host defense and disease

BACKGROUND: While the ability of bacteriophages to kill bacteria is well known and has been used in some centers to combat antibiotics – resistant infections, our knowledge about phage interactions with mammalian cells is very limited and phages have been believed to have no intrinsic tropism for those cells. PRESENTATION OF THE HYPOTHESIS: At least some phages (e.g., T4 coliphage) express Lys-Arg-Gly (KGD) sequence which binds β3 integrins (primarily αIIbβ3). Therefore, phages could bind β3+ cells (platelets, monocytes, some lymphocytes and some neoplastic cells) and downregulate activities of those cells by inhibiting integrin functions. TESTING THE HYPOTHESIS: Binding of KGD+ phages to β3 integrin+ cells may be detected using standard techniques involving phage – mediated bacterial lysis and plaque formation. Furthermore, the binding may be visualized by electron microscopy and fluorescence using labelled phages. Binding specificity can be confirmed with the aid of specific blocking peptides and monoclonal antibodies. In vivo effects of phage – cell interactions may be assessed by examining the possible biological effects of β3 blockade (e.g., anti-metastatic activity). IMPLICATION OF THE HYPOTHESIS: If, indeed, phages can modify functions of β3+ cells (platelets, monocytes, lymphocytes, cancer cells) they could be important biological response modifiers regulating migration and activities of those cells. Such novel understanding of their role could open novel perspectives in their potential use in treatment of cardiovascular and autoimmune disease, graft rejection and cancer

When a year is not enough: Further study of the seasonality of planktonic protist communities structure in an ice-free high arctic fjord (adventfjorden, west spitsbergen)

As a contribution to understanding the ecological framework of protistan seasonal succession patterns, we present the weekly-to-monthly (January–October) light microscopy-based study of nano- and microplanktonic protist communities of Adventfjorden waters in 2013. In general, protist dynamics corresponded to the classic paradigm for the Arctic ice-free waters with extremely low abundance and diversity in winter, with the main abundance and chlorophyll-a peak in April-May, followed by a diverse but low abundant community during summer/autumn. However, the reference of the obtained data to the previously conducted year-round research in 2012 allows us to observe substantial variability in seasonal patterns between the two consecutive years. The most striking difference concerned the spring bloom composition and abundance, with clear domination of Phaeocystis pouchetii in Atlantified fjord waters in 2012 and Bacillariophyceae-dominated (mainly Fragilariopsis, Thalassiosira nordenskioeldii, and, in a lesser extent, also Pseudo-nitzschia seriata) bloom in 2013 when local water prevailed. On the other hand, a surprisingly high share of spring bloom taxa persisted throughout the summer/autumn of 2013 when they co-occurred with typical summer taxa (dinoflagellates and other small flagellates). Their extended growth could, at least in part, result from scarce Ciliophora throughout the season, which, in turn, can be attributed to the high grazing pressure of very numerous meroplankton and mesozooplankton. In light of this, our results may be relevant in discussions proposed for the West Spitsbergen waters link between the Atlantic water inflow and the spring bloom composition, as well as its further progression in the productive season. They also highlight the strong need for further high-resolution monitoring of annual plankton cycles and great caution when looking for phenological patterns within a single year or when interpreting short-term data

New Methodologies for Grasslands Monitoring

Monitoring grassland areas to assess changes in their condition over time has been the subject of a lot of research at different scales. Initially the techniques focused on field-based measurements, and modelling. However, several obtained data were site specific. Based on the increase in availability of remote sensing data and products, there is an expectation that remote sensing can provide rapid and definite answers to the challenges of detecting and monitoring grassland conditions and associated changes in productivity. At the time of European Copernicus Programme, the new possibilities of satellite data from the group of Sentinel satellites give the new perspective for grasslands monitoring. The Finegrass Polish – Norwegian Project have been set to detect the biomass and its changes for grasslands in Poland and Norway applying different approaches due to different specific of the area. The results have been verified by ground measurements

MCPIP1 functions as a safeguard of early embryonic development

Monocyte chemoattractant protein-induced protein 1 (MCPIP1), also called Regnase-1, is an RNase that has been described as a key negative modulator of inflammation. MCPIP1 also controls numerous tumor-related processes, such as proliferation, apoptosis and differentiation. In this study, we utilized a zebrafish model to investigate the role of Mcpip1 during embryogenic development. Our results demonstrated that during embryogenesis, the expression of the zc3h12a gene encoding Mcpip1 undergoes dynamic changes. Its transcript levels gradually increase from the 2-cell stage to the spherical stage and then decrease rapidly. We further found that ectopic overexpression of wild-type Mcpip1 but not the catalytically inactive mutant form resulted in an embryonic lethal phenotype in zebrafish embryos (24 hpf). At the molecular level, transcriptomic profiling revealed extensive changes in the expression of genes encoding proteins important in the endoplasmic reticulum stress response and in protein folding as well as involved in the formation of primary germ layer, mesendoderm and endoderm development, heart morphogenesis and cell migration. Altogether, our results demonstrate that the expression of zc3h12a must be tightly controlled during the first cell divisions of zebrafish embryos and that a rapid decrease in its mRNA expression is an important factor promoting proper embryo development

The engagement of young people in drug interventions in coercive contexts: findings from a cross-national European study

Background: The engagement of young people has been a neglected area in youth justice and drugs policy and practice. This paper explores the concept of ‘engagement’ in relation to drugs interventions in custodial and community settings in different European countries. Methods: Interviews were undertaken with young people (aged 14-25 years) in contact with the criminal justice system who use illegal drugs and with practitioners involved in the delivery of interventions for our target group in Denmark, Italy, Poland the UK. Results: The key techniques to engage young people were described in similar terms across the countries. These included forming relationships based on trust, honesty and empathy, setting goals collaboratively and employing practitioners with lived experience and understanding. The objectives and activities on offer are often constrained by the criminal justice contexts. Conclusions: Despite the differences between the countries in terms of criminal justice systems and the structure of drug interventions, there were remarkable similarities in the ways young people and practitioners described effective engagement. Strong emphasis on operational engagement to ensure positive relationships between young people and practitioners was important in the design and delivery of interventions. Practitioners working in criminal justice contexts need to have flexibility and autonomy to work creatively to find ways to engage, connect and inspire young people

Characterizing the tumor microenvironment in rare renal cancer histological types

The tumor microenvironment (TME), including immune cells, cancer-associated fibroblasts, endothelial cells, adjacent normal cells, and others, plays a crucial role in influencing tumor behavior and progression. Here, we characterized the TME in 83 primary renal tumors and matched metastatic or recurrence tissue samples (n = 15) from papillary renal cell carcinoma (pRCC) types 1 (n = 20) and 2 (n = 49), collecting duct carcinomas (CDC; n = 14), and high-grade urothelial carcinomas (HGUC; n = 5). We investigated 10 different markers of immune infiltration, vasculature, cell proliferation, and epithelial-to-mesenchymal transition by using machine learning image analysis in conjunction with immunohistochemistry. Marker expression was compared by Mann-Whitney and Kruskal-Wallis tests and correlations across markers using Spearman's rank correlation coefficient. Multivariable Poisson regression analysis was used to compare marker expression between histological types, while accounting for variation in tissue size. Several immune markers showed different rates of expression across histological types of renal carcinoma. Using pRCC1 as reference, the incidence rate ratio (IRR) of CD3+ T cells (IRR [95% confidence interval, CI] = 2.48 [1.53-4.01]) and CD20+ B cells (IRR [95% CI] = 4.38 [1.22-5.58]) was statistically significantly higher in CDC. In contrast, CD68+ macrophages predominated in pRCC1 (IRR [95% CI] = 2.35 [1.42-3.9]). Spatial analysis revealed CD3+ T-cell and CD20+ B-cell expressions in CDC to be higher at the proximal (p < 0.0001) and distal (p < 0.0001) tumor periphery than within the central tumor core. In contrast, expression of CD68+ macrophages in pRCC2 was higher in the tumor center compared to the proximal (p = 0.0451) tumor periphery and pRCC1 showed a distance-dependent reduction, from the central tumor, in CD68+ macrophages with the lowest expression of CD68 marker at the distal tumor periphery (p = 0.004). This study provides novel insights into the TME of rare kidney cancer types, which are often understudied. Our findings of differences in marker expression and localization by histological subtype could have implications for tumor progression and response to immunotherapies or other targeted therapies

E2F1-mediated FOS induction in arsenic trioxide-induced cellular transformation: effects of global H3K9 hypoacetylation and promoter-specific hyperacetylation in vitro.

BACKGROUND: Aberrant histone acetylation has been observed in carcinogenesis and cellular transformation associated with arsenic exposure; however, the molecular mechanisms and cellular outcomes of such changes are poorly understood. OBJECTIVE: We investigated the impact of tolerated and toxic arsenic trioxide (As2O3) exposure in human embryonic kidney (HEK293T) and urothelial (UROtsa) cells to characterize the alterations in histone acetylation and gene expression as well as the implications for cellular transformation. METHODS: Tolerated and toxic exposures of As2O3 were identified by measurement of cell death, mitochondrial function, cellular proliferation, and anchorage-independent growth. Histone extraction, the MNase sensitivity assay, and immunoblotting were used to assess global histone acetylation levels, and gene promoter-specific interactions were measured by chromatin immunoprecipitation followed by reverse-transcriptase polymerase chain reaction. RESULTS: Tolerated and toxic dosages, respectively, were defined as 0.5 μM and 2.5 μM As2O3 in HEK293T cells and 1 μM and 5 μM As2O3 in UROtsa cells. Global hypoacetylation of H3K9 at 72 hr was observed in UROtsa cells following tolerated and toxic exposure. In both cell lines, tolerated exposure alone led to H3K9 hyperacetylation and E2F1 binding at the FOS promoter, which remained elevated after 72 hr, contrary to global H3K9 hypoacetylation. Thus, promoter-specific H3K9 acetylation is a better predictor of cellular transformation than are global histone acetylation patterns. Tolerated exposure resulted in an increased expression of the proto-oncogenes FOS and JUN in both cell lines at 72 hr. CONCLUSION: Global H3K9 hypoacetylation and promoter-specific hyperacetylation facilitate E2F1-mediated FOS induction in As2O3-induced cellular transformation

Earlier sea-ice melt extends the oligotrophic summer period in the Barents Sea with low algal biomass and associated low vertical flux

The decrease in Arctic sea-ice extent and thickness as a result of global warming will impact the timing, duration, magnitude and composition of phytoplankton production with cascading effects on Arctic marine food-webs and biogeochemical cycles. Here, we elucidate the environmental drivers shaping the composition, abundance, biomass, trophic state and vertical flux of protists (unicellular eukaryotes), including phytoplankton, in the Barents Sea in late August 2018 and 2019. The two years were characterized by contrasting sea-ice conditions. In August 2018, the sea-ice edge had retreated well beyond the shelf break into the Nansen Basin (>82°N), while in 2019, extensive areas of the northwestern Barents Sea shelf (>79°N) were still ice-covered. These contrasting sea-ice conditions resulted in marked interannual differences in the pelagic protist community structure in this area. In August 2018, the protist community was in a post-bloom stage of seasonal succession characterized by oligotrophic surface waters and dominance of small-sized phytoplankton and heterotrophic protists (predominantly flagellates and ciliates) at most stations. In 2019, a higher contribution of autotrophs and large-celled phytoplankton, particularly diatoms, to total protist biomass compared to 2018 was reflected in higher chlorophyll a concentrations and suggested that the protist community was still in a late bloom stage at some stations. It is noteworthy that particularly diatoms contributed a considerably higher proportion to the protist biomass at the ice-covered stations in both years compared to the open-water stations. This pattern was also evident in the higher vertical protist biomass flux in 2019, dominated by dinoflagellates and diatoms, compared to 2018. Our results suggest that the predicted transition toward an ice-free Barents Sea will lengthen the oligotrophic summer period with low algal biomass and associated low vertical flux.publishedVersio