Chemometric Modelling and Remote Sensing of Arable Land Soil Organic Carbon as Mediterranean Land Degradation Indicator - A Case Study in Southern Italy

The application of chemometric models for the quantitative estimation of soil organic matter (SOM) from laboratory reflectance data from samples taken on the regional/national level from Italian sites is explored in Part 1 of this report. In addition, the possibility to transfer the developed models from the spectral resolution of lab/field instrumentation to the one of operational satellite systems has been evaluated, by using the laboratory spectra to simulate the respective soil reflectance signatures of Landsat-TM, MODIS and MERIS. Soil physical and chemical laboratory analyses results were provided by the JRC-IES SOIL action (formerly JRC FP6 MOSES action). The 376 soil samples, used in this study, were collected for previous projects of the IES SOIL action and its partners within a wide range of environmental settings in Italy. Reflectance measurements were obtained on disturbed soil samples using an ASD Field Spec Pro spectro-radiometer. Data transformation methods (standardisation, vector-normalisation and first and second order derivatives) have been applied on the spectral data. The transformed spectral data have been used for the prediction of SOM and carbonate content using the partial least squares regression (PLSR). The results (R2 between 0.57 and 0.8) demonstrate the successful application of reflectance spectroscopy combined with chemometric modelling for the estimation of SOM and carbonate content. The calibration models demonstrated a tolerable stability over a variety of different soil types, which is a positive factor for opening the opportunity to use this methodology for monitoring larger areas. Furthermore it could be shown, that the spectral resolution of the MERIS sensor is sufficient for approximation of the SOC/SOM content from pure soil spectra. Consequently the second part of the study focused on the use of MERIS satellite data for the estimation of soil organic carbon content of bare soils at regional scale. The study concentrated on the Apulia region, where we had high density of available field sampling sites, and on parts of the coastal areas of the Abruzzi region South of Pescara, which are known to be amongst the more critical areas in Italy suffering from land degradation problems and desertification risk. For specific morphological-lithological units simple spectral models, based on soil colour and spectral shape attributes, were built to derive soil organic carbon content. In order to apply these models to MERIS satellite data, a time series of images covering the years 2003 and 2004 were acquired for Southern Italy. Pre-processing of image data aimed at extracting those pixels with negligible vegetation abundance at least at one date of observation per year, i.e. practically showing pure bare soil signatures only, and consisted of: ¿ geometrical co-registration and superposition of images from different acquisition dates ¿ the derivation of minimum vegetation composites for each year applying simple minimum value criteria for MERIS vegetation indices ¿ the determination of soil and vegetation abundance at sub-pixel level based on spectral mixture modelling. ¿ the removal of residual vegetation influence from image spectra Soil colour attributes (soil lightness, R coordinate of R-G-B model) and coefficients of a second order polynomial fitted through the pixel reflectance signatures were derived from the minimum vegetation composites of both years. The spatial distribution of soil organic carbon was estimated for each year within specific morphological-lithological units in the Apulia region. In addition models could be applied to other regions in Southern Italy. Estimation results showed good agreement with independent field data and the pedo-transfer rules based estimations of Jones et. al. (2004, 2005).JRC.H.7-Land management and natural hazard

Reviews and syntheses: Remotely sensed optical time series for monitoring vegetation productivity

Vegetation productivity is a critical indicator of global ecosystem health and is impacted by human activities and climate change. A wide range of optical sensing platforms, from ground-based to airborne and satellite, provide spatially continuous information on terrestrial vegetation status and functioning. As optical Earth observation (EO) data are usually routinely acquired, vegetation can be monitored repeatedly over time, reflecting seasonal vegetation patterns and trends in vegetation productivity metrics. Such metrics include gross primary productivity, net primary productivity, biomass, or yield. To summarize current knowledge, in this paper we systematically reviewed time series (TS) literature for assessing state-of-the-art vegetation productivity monitoring approaches for different ecosystems based on optical remote sensing (RS) data. As the integration of solar-induced fluorescence (SIF) data in vegetation productivity processing chains has emerged as a promising source, we also include this relatively recent sensor modality. We define three methodological categories to derive productivity metrics from remotely sensed TS of vegetation indices or quantitative traits: (i) trend analysis and anomaly detection, (ii) land surface phenology, and (iii) integration and assimilation of TS-derived metrics into statistical and process-based dynamic vegetation models (DVMs). Although the majority of used TS data streams originate from data acquired from satellite platforms, TS data from aircraft and unoccupied aerial vehicles have found their way into productivity monitoring studies. To facilitate processing, we provide a list of common toolboxes for inferring productivity metrics and information from TS data. We further discuss validation strategies of the RS data derived productivity metrics: (1) using in situ measured data, such as yield; (2) sensor networks of distinct sensors, including spectroradiometers, flux towers, or phenological cameras; and (3) inter-comparison of different productivity metrics. Finally, we address current challenges and propose a conceptual framework for productivity metrics derivation, including fully integrated DVMs and radiative transfer models here labelled as “Digital Twin”. This novel framework meets the requirements of multiple ecosystems and enables both an improved understanding of vegetation temporal dynamics in response to climate and environmental drivers and enhances the accuracy of vegetation productivity monitoring

Reviews and syntheses:Remotely sensed optical time series for monitoring vegetation productivity

International audienceAbstract. Vegetation productivity is a critical indicator of global ecosystem health and is impacted by human activities and climate change. A wide range of optical sensing platforms, from ground-based to airborne and satellite, provide spatially continuous information on terrestrial vegetation status and functioning. As optical Earth observation (EO) data are usually routinely acquired, vegetation can be monitored repeatedly over time; reflecting seasonal vegetation patterns and trends in vegetation productivity metrics. Such metrics include e.g., gross primary productivity, net primary productivity, biomass or yield. To summarize current knowledge, in this paper, we systematically reviewed time series (TS) literature for assessing state-of-the-art vegetation productivity monitoring approaches for different ecosystems based on optical remote sensing (RS) data. As the integration of solar-induced fluorescence (SIF) data in vegetation productivity processing chains has emerged as a promising source, we also include this relatively recent sensor modality. We define three methodological categories to derive productivity metrics from remotely sensed TS of vegetation indices or quantitative traits: (i) trend analysis and anomaly detection, (ii) land surface phenology, and (iii) integration and assimilation of TS-derived metrics into statistical and process-based dynamic vegetation models (DVM). Although the majority of used TS data streams originate from data acquired from satellite platforms, TS data from aircraft and unoccupied aerial vehicles have found their way into productivity monitoring studies. To facilitate processing, we provide a list of common toolboxes for inferring productivity metrics and information from TS data. We further discuss validation strategies of the RS-data derived productivity metrics: (1) using in situ measured data, such as yield, (2) sensor networks of distinct sensors, including spectroradiometers, flux towers, or phenological cameras, and (3) inter-comparison of different productivity products or modelled estimates. Finally, we address current challenges and propose a conceptual framework for productivity metrics derivation, including fully-integrated DVMs and radiative transfer models here labelled as "Digital Twin". This novel framework meets the requirements of multiple ecosystems and enables both an improved understanding of vegetation temporal dynamics in response to climate and environmental drivers and also enhances the accuracy of vegetation productivity monitoring

Multi-sensor spectral synergies for crop stress detection and monitoring in the optical domain: A review

Remote detection and monitoring of the vegetation responses to stress became relevant for sustainable agriculture. Ongoing developments in optical remote sensing technologies have provided tools to increase our understanding of stress-related physiological processes. Therefore, this study aimed to provide an overview of the main spectral technologies and retrieval approaches for detecting crop stress in agriculture. Firstly, we present integrated views on: i) biotic and abiotic stress factors, the phases of stress, and respective plant responses, and ii) the affected traits, appropriate spectral domains and corresponding methods for measuring traits remotely. Secondly, representative results of a systematic literature analysis are highlighted, identifying the current status and possible future trends in stress detection and monitoring. Distinct plant responses occurring under short-term, medium-term or severe chronic stress exposure can be captured with remote sensing due to specific light interaction processes, such as absorption and scattering manifested in the reflected radiance, i.e. visible (VIS), near infrared (NIR), shortwave infrared, and emitted radiance, i.e. solar-induced fluorescence and thermal infrared (TIR). From the analysis of 96 research papers, the following trends can be observed: increasing usage of satellite and unmanned aerial vehicle data in parallel with a shift in methods from simpler parametric approaches towards more advanced physically-based and hybrid models. Most study designs were largely driven by sensor availability and practical economic reasons, leading to the common usage of VIS-NIR-TIR sensor combinations. The majority of reviewed studies compared stress proxies calculated from single-source sensor domains rather than using data in a synergistic way. We identified new ways forward as guidance for improved synergistic usage of spectral domains for stress detection: (1) combined acquisition of data from multiple sensors for analysing multiple stress responses simultaneously (holistic view); (2) simultaneous retrieval of plant traits combining multi-domain radiative transfer models and machine learning methods; (3) assimilation of estimated plant traits from distinct spectral domains into integrated crop growth models. As a future outlook, we recommend combining multiple remote sensing data streams into crop model assimilation schemes to build up Digital Twins of agroecosystems, which may provide the most efficient way to detect the diversity of environmental and biotic stresses and thus enable respective management decisions

Estimating the fractional cover of growth forms and bare surface in savannas. A multi-resolution approach based on regression tree ensembles

Evaluations of existing land cover maps have revealed that high landscape heterogeneity and small patch sizes are a major reason for misclassification. These problems globally occur in biomes of mixed vegetation structure and are particularly relevant for African savannas. This paper presents a multi-resolution approach to derive fractional cover of vegetation growth forms at sub-pixel level, aiming at an improved mapping of land cover in the African grassland, savanna and shrubland biome. Fractional cover is delineated for woody growth forms (trees and shrubs), herbaceous growth forms, and bare surface. The approach incorporates very high resolution (QuickBird/IKONOS, 0.6–1 m), high resolution (Landsat TM/ETM+, 30 m), and medium resolution data (MODIS, 250 m). While QuickBird/IKONOS data are classified into discrete classes, at Landsat and MODIS resolutions, sub-pixel cover is delineated using non-parametric ensemble regression trees from the random forest family. The propagation of errors in the hierarchical multi-resolution approach is assessed with Monte Carlos simulations. The multi-resolution approach allows the adequate description of the heterogeneous vegetation structure in selected study regions of Southern Africa. The RMSE of the delineated fractional cover values range between 3.1% and 8.2% when compared with higher resolution data and between 4.4% and 9.9% when compared with field surveys. Errors at the Landsat resolution show minor influence on the accuracy of the MODIS results. Regarding the inter-resolution error propagation, for 90% of the Monte Carlo simulations, errors at the Landsat resolution resulted in RMSEs for MODIS increased by less than 4% (woody vegetation), 3.5% (herbaceous vegetation) and 2% (bare surface)

Spatio-temporal modelling of the cabon budget in West Africa with remote sensing data on a regional scale

Der Klimawandel und insbesondere die globale Erwärmung gehören aktuell zu den größten Herausforderungen an Politik und Wissenschaft. Steigende CO2-Emissionen sind hierbei maßgeblich für die Klimaerwärmung verantwortlich. Ein regulierender Faktor beim CO2-Austausch mit der Atmosphäre ist die Vegetation, welche als CO2-Senke aber auch als CO2-Quelle fungieren kann. Diese Funktionen können durch Analysen der Landbedeckungsänderung in Kombination mit Modellierungen der Kohlenstoffbilanz quantifiziert werden, was insbesondere von aktuellen und zukünftigen politischen Instrumenten wie CDM (Clean Development Mechanism) oder REDD (Reducing Emissions from Deforestation and Degradation) gefordert wird. Vor allem in Regionen mit starker Landbedeckungsänderung und hoher Bevölkerungsdichte sowie bei geringem Wissen über die Produktivität und CO2-Speicherpotentiale der Vegetation, bedarf es einer Erforschung und Quantifizierung der terrestrischen Kohlenstoffspeicher. Eine Region, für die dies in besonderem Maße zutrifft, ist Westafrika. Jüngste Studien haben gezeigt, dass sich einerseits die Folgen des Klimawandels und Umweltveränderungen sehr stark in Westafrika auswirken werden und andererseits Bevölkerungswachstum eine starke Änderung der Landbedeckung für die Nutzung als agrarische Fläche bewirkt hat. Folglich sind in dieser Region die terrestrischen Kohlenstoffspeicher durch Ausdehnung der Landwirtschaft und Waldrodung besonders gefährdet. Große Flächen agieren anstelle ihrer ursprünglichen Funktion als CO2-Senke bereits als CO2-Quelle. [...]Global warming associated with climate change is one of the greatest challenges of today's world. One regulating factor of CO2 exchange with the atmosphere is the vegetation cover. Measurements of land cover changes in combination with modeling of the carbon balance can therefore contribute to determining temporal variations of CO2 sources and sinks, which is an essential necessity of existing and prospective political instruments like CDM (Clean Development Mechanism) or REDD (Reducing Emissions from Deforestation and Degradation). The need for quantifiable terrestrial carbon stocks is especially high for regions, where rates of land cover transformation and population density are high and knowledge on vegetation productivity is low. One region which is characterized by these criteria is West Africa. Therefore, carbon stocks in this region are seriously endangered by land cover change like the expansion of agriculture and forest logging. Large areas already act as carbon sources on a yearly basis instead of their previous function as carbon sink. Since only a few studies have analyzed the terrestrial carbon stocks in Africa and especially regional analysis in West Africa are missing, the following study focuses on regional scale modeling of the actual terrestrial carbon stocks. Additionally, the potential carbon stocks of unmanaged land cover and the potential for CO2 payments have been analyzed in this work. To quantify and assess carbon fluxes as well as the loss of carbon, net primary productivity of vegetation has been modeled, based on the plants characteristics to fix carbon from the atmosphere during photosynthesis. Modeling vegetation dynamics and net primary productivity has been realized by using MODIS 250m time series for semi-humid and semi-arid savanna ecosystems in West Africa. This study aimed to quantify CO2 exchanges of the Savanna regions in the Volta basin by applying and adapting the Regional Biomass Model (RBM). The RBM was developed by Jochen Richters (2005) at a resolution of 1000m for the Namibian Kaokoveld. In this study the model was optimized to the scale of 232m to consider the heterogeneous landscape in West Africa (RBM+). New input parameters with higher accuracies and resolution were generated instead of using the global standard products. The most important parameters for the modeling are FPAR and the fractional cover of herbaceous and woody vegetation. To enhance the MODIS FPAR product, linear interpolation and downscaling algorithms were applied. The main objective of the downscaling is a better representation of the finely scattered vegetation by the 232m resolution FPAR. The second optimized parameter, the fractional cover of herbaceous and woody vegetation was represented by the Vegetation Continuous Fields product (VCF) from MODIS in the originally version of the RBM. This global product reflects the vegetation structure of West Africa poorly, since few high resolution training data is available for this region, and the dynamic savanna vegetation can hardly be classified by not regionally adapted methods. Additionally, the data is only available with 500m resolution. Therefore, in this study a new product with 232m resolution was developed which represents the spatial heterogeneity well and, due to the regional adaptation, shows higher accuracies. The percentage cover of woody and herbaceous vegetation and bare soil on 232m MODIS data was calculated in a multi scale approach. Based on very high resolution data, represented by Quickbird and Ikonos with 0.6-4m resolution, and high resolution data from Landsat with 30m resolution, the percentage coverage was estimated for representative focus regions. These classifications were used as a training data set to determine the percentage coverage on the 232m scale with MODIS time series for the whole study region. Based on these optimized and adapted input parameters, the net primary productivity was modeled. Data from a meteorological station and an Eddy-Covariance-Flux allowed a detailed validation of the input parameters and of the model results. The model led to good results as it only overestimated the net primary productivity for the two analyzed years 2005 and 2006 by 8.8 and 2.0 %, respectively. The second aim of the study was an analysis of the potential for long term terrestrial carbon sinks. Classifications of the actual and of the potential land cover were calculated for this analysis. Considering the overall long time CO2 fixation behavior of trees, which depends on their age, longterm carbon stocks for 100 years were simulated. As carbon fixing could be paid by emission trading, which is in future depending on the political Post-Kyoto programs, potential alternative income was calculated with different price scenarios for the three countries. A comparison with the gross domestic products of these countries and with developing aid, showed the significance of CO2 trading in this region

Relationships between high resolution RapidEye based fPAR and MODIS vegetation indices in a heterogeneous agricultural region

The Moderate Imaging Spectroradiometer (MODIS) provides operational products of the Normalized Difference Vegetation Index (NDVI), the Enhanced Vegetation Index (EVI), and the fraction of photosynthetic active radiation (fPAR). FPAR can be used in productivity models, but agricultural applications depend on sub-pixel heterogeneity. Examples for heterogeneous areas are the irrigation systems of the inner Aral Sea Basin, where the 1 km fPAR product proved less suited. An alternative can be to upscale fPAR to the 250 m scale, but there are few studies evaluating this approach. In this study, the use of MODIS 250 m NDVI and EVI for this approach was investigated in an irrigation system in western Uzbekistan. The analysis was based on high resolution fPAR maps and a crop map for the growing season 2009, derived from ground measurements and multitemporal RapidEye data. The data was used to explore statistical relationships between RapidEye fPAR and MODIS NDVI/EVI with respect to spatial heterogeneity. The correlations varied between products (daily NDVI, 8-day NDVI, 16-day NDVI/EVI), with results suggesting that 8-day NDVI performed best. The analyses and the compiled fPAR maps show that, compared to 1 km MODIS fPAR, the 250 m scale is more homogeneous, allows for crop-specific analyses, and better captures the spatial patterns in the study region