Using geological and geochemical information to estimate the potential distribution of trace elements in Scottish groundwater

There are currently few reliable data available for the concentrations of trace elements in Scottish groundwaters. A new project Baseline Scotland, jointly funded by the British Geological Survey (BGS) and the Scottish Environment Protection Agency (SEPA), seeks to improve the data availability and general understanding of the chemistry of Scotland’s groundwater. However, this is a major undertaking and these new data will take several years to collect and interpret across the whole of Scotland. In the interim, SEPA have asked BGS to use their existing knowledge and data to give a rough estimate of where certain elements are more likely to be elevated in groundwater. This information will be used to help focus future monitoring and give background for Baseline Scotland. Predicting trace element concentrations is difficult, in part due to lack of knowledge on the distribution of mineral phases, the reactivity of different minerals and the geochemical environment, particularly the redox status. This report scopes the potential scale of naturally elevated trace elements in Scottish groundwater, in particular those elements that are potentially harmful to health: e.g. aluminium, arsenic, barium, cadmium, chromium, lead, manganese, nickel, uranium and zinc. The problems and limitations of prediction are discussed in the report and this work does not replace a proper assessment based on actual chemical analyses of groundwater. The method uses information on the geochemistry of the Scottish environment derived from the most comprehensive geochemical data set for Scotland, the BGS Geochemical Baseline Survey of the Environment (G-BASE), combined with the limited data available on the chemistry of Scottish groundwaters. The conditions under which each of the elements can become elevated in groundwater are discussed and the geological and geochemical information interpreted to produce a series of maps highlighting areas where each trace element may be elevated in groundwater relative to the Scottish average. The maps are based primarily on the 1:625 000 scale bedrock geology map of Scotland. In order to make the scheme and the maps simple and manageable, we have used the same numbers to describe the individual rock units (1 to 114) that are usedd on the Geological map of the UK (Solid Geology): North sheet. Some rock units have been subdivided, and other small areas highlighted where additional information is known, either from G-BASE or previous studies. After assessing the results of the exercise the following conclusions can be drawn: 1. The study has provided a useful summary of geochemical information for trace elements in Scotland, and detail the conditions in which these elements may become elevated in groundwater. This provides essential background to the Baseline Scotland project, which aims to improve the availability of groundwater chemistry data and the general understanding of the chemistry of Scotland’s groundwater. 2. The predictions can be used as a first pass to help focus and prioritise additional monitoring and for helping to interpret groundwater chemistry data from different areas. The predictions are only preliminary and will be modified in the future by detailed groundwater sampling and interpretation. There are several caveats: • For all of the trace elements considered, the lack of available groundwater chemistry data with detailed analysis of trace elements, and their restricted spatial distribution, means that it is not possible to rigorously test whether the groundwater quality predictions are accurate or not. • More groundwater chemistry data are available for three elements, barium, manganese and zinc, allowing a rudimentary test of the predictive maps. For barium the prediction appears to work well, but there is poor correlation for zinc. For manganese, some correlation is evident, but the complexity and variability of local conditions are such that much variation is observed. • This approach, using broad, national scale geological and environmental data, cannot account for the complexity of the controls on groundwater chemistry: i.e. the heterogeneous nature of the Scottish environment, not least the aquifer mineralogy and glacial history, and the complex behaviour of trace elements in groundwater, determined by aspects such as flow pathways, residence times, and the geochemical environment (for example, oxidising/reducing or acidic/alkaline conditions). In summary, this approach appears to be a useful first step in trying to estimate the likely distribution of trace elements in Scottish groundwater, in the absence of much reliable groundwater quality data. However, only by systematically collecting reliable groundwater chemistry data, across different aquifers and regions and from different depths, can the variation in trace elements in groundwater across Scotland be understood. Careful modelling and interpretation of these new data in the context of the geology and environmental conditions will help make future predictions of groundwater quality more reliable and provide reference information for the Water Framework Directive

Do young children get the message? The effects of repeated video viewing on explicit and implicit information

The aim of this study was to explore the effects of repeat viewing on comprehension of explicitly and implicitly presented information in an animated movie. Seventy-three pre-school children watched an animated film and were tested for comprehension after either their single or fifth viewing. Only children&rsquo;s comprehension of explicitly presented information was facilitated by repeat viewing. However, post hoc analyses revealed that children&rsquo;s explicit and implicit comprehension of a central character Thunderbolt significantly increased across viewing conditions, whereas, repeat viewing only facilitated children&rsquo;s explicit comprehension of the central character Patch. The theoretical and practical implications of these findings are discussed.<br /

Mutation detection in cholestatic patients using microarray resequencing of ATP8B1 and ABCB11

© 2013 McKay KE et al. Background: Neonatal cholestasis is a common presentation of childhood liver diseases and can be a feature of various conditions including disorders of bile acid biogenesis and transport, various inborn errors of metabolism and perinatal infections. Some inherited metabolic diseases can be easily screened using biochemical assays, however many can only be accurately diagnosed by DNA sequencing. Fluorescent capillary Sanger sequencing (FS) is the gold standard method used by clinical laboratories for genetic diagnosis of many inherited conditions; however, it does have limitations. Recently microarray resequencing (MR) has been introduced into research and clinical practice as an alternative method for genetic diagnosis of heterogeneous conditions. In this report we compared the accuracy of mutation detection for MR with FS in a group of patients with 'low-normal' gamma glutamyl transpeptidase (gGT) cholestasis without known molecular diagnoses. Methods: 29 patient DNA samples were tested for mutations in the ATP8B1 and ABCB11 genes using both FS and MR. Other known causes of "low gGT cholestasis such as ARC syndrome and bile acid biosynthesis disorders were excluded. Results: Mutations were identified in 13/29 samples. In 3/29 samples FS and MR gave discordant results: MR had a false positive rate of 3.4% and a false negative rate of 7%. Conclusions: The major advantage of MR over FS is that multiple genes can be screened in one experiment, allowing rapid and cost-effective diagnoses. However, we have demonstrated that MR technology is limited in sensitivity. We therefore recommend that MR be used as an initial evaluation, with FS deployed when genetic and clinical or histopathological findings are discordant

The frequency and validity of self-reported diagnosis of Parkinson's Disease in the UK elderly: MRC CFAS cohort

BACKGROUND: Estimates of the incidence and prevalence of chronic diseases can be made using established cohort studies but these estimates may have lower reliability if based purely on self-reported diagnosis. METHODS: The MRC Cognitive Function & Ageing Study (MRC CFAS) has collected longitudinal data from a population-based random sample of 13004 individuals over the age of 65 years from 5 centres within the UK. Participants were asked at baseline and after a two-year follow-up whether they had received a diagnosis of Parkinson's disease. Our aim was to make estimates of the incidence and prevalence of PD using self-reporting, and then investigate the validity of self-reported diagnosis using other data sources where available, namely death certification and neuropathological examination. RESULTS: The self-reported prevalence of Parkinson's disease (PD) amongst these individuals increases with age from 0.7% (95%CI 0.5–0.9) for 65–75, 1.4% (95%CI 1.0–1.7) for 75–85, and 1.6% (95%CI 1.0–2.3) for 85+ age groups respectively. The overall incidence of self reported PD in this cohort was 200/100,000 per year (95%CI 144–278). Only 40% of the deceased individuals reporting prevalent PD and 35% of those reporting incident PD had diagnoses of PD recorded on their death certificates. Neuropathological examination of individuals reporting PD also showed typical PD changes in only 40%, with the remainder showing basal ganglia pathologies causing parkinsonism rather than true PD pathology. CONCLUSION: Self-reporting of PD status may be used as a screening tool to identify patients for epidemiological study, but inevitably identifies a heterogeneous group of movement disorders patients. Within this group, age, male sex, a family history of PD and reduced cigarette smoking appear to act as independent risk factors for self-reported PD

Challenges to undertaking randomised trials with looked after children in social care settings.

BACKGROUND: Randomised controlled trials (RCTs) are widely viewed as the gold standard for assessing effectiveness in health research; however many researchers and practitioners believe that RCTs are inappropriate and un-doable in social care settings, particularly in relation to looked after children. The aim of this article is to describe the challenges faced in conducting a pilot study and phase II RCT of a peer mentoring intervention to reduce teenage pregnancy in looked after children in a social care setting. METHODS: Interviews were undertaken with social care professionals and looked after children, and a survey conducted with looked after children, to establish the feasibility and acceptability of the intervention and research design. RESULTS: Barriers to recruitment and in managing the intervention were identified, including social workers acting as informal gatekeepers; social workers concerns and misconceptions about the recruitment criteria and the need for and purpose of randomisation; resource limitations, which made it difficult to prioritise research over other demands on their time and difficulties in engaging and retaining looked after children in the study. CONCLUSIONS: The relative absence of a research infrastructure and culture in social care and the lack of research support funding available for social care agencies, compared to health organisations, has implications for increasing evidence-based practice in social care settings, particularly in this very vulnerable group of young people

Death and Display in the North Atlantic: The Bronze and Iron Age Human Remains from Cnip, Lewis, Outer Hebrides

YesThis paper revisits the series of disarticulated human remains discovered during the 1980s excavations of the Cnip wheelhouse complex in Lewis. Four fragments of human bone, including two worked cranial fragments, were originally dated to the 1st centuries BC/AD based on stratigraphic association. Osteoarchaeological reanalysis and AMS dating now provide a broader cultural context for these remains and indicate that at least one adult cranium was brought to the site more than a thousand years after the death of the individual to whom it had belonged

Cryptic Eimeria genotypes are common across the southern but not northern hemisphere

The phylum Apicomplexa includes parasites of medical, zoonotic and veterinary significance. Understanding the global distribution and genetic diversity of these protozoa is of fundamental importance for efficient, robust and long-lasting methods of control. Eimeria spp. cause intestinal coccidiosis in all major livestock animals and are the most important parasites of domestic chickens in terms of both economic impact and animal welfare. Despite having significant negative impacts on the efficiency of food production, many fundamental questions relating to the global distribution and genetic variation of Eimeria spp. remain largely unanswered. Here, we provide the broadest map yet of Eimeria occurrence for domestic chickens, confirming that all the known species (Eimeria acervulina, Eimeria brunetti, Eimeria maxima, Eimeria mitis, Eimeria necatrix, Eimeria praecox, Eimeria tenella) are present in all six continents where chickens are found (including 21 countries). Analysis of 248 internal transcribed spacer sequences derived from 17 countries provided evidence of possible allopatric diversity for species such as E. tenella (FST values ⩽0.34) but not E. acervulina and E. mitis, and highlighted a trend towards widespread genetic variance. We found that three genetic variants described previously only in Australia and southern Africa (operational taxonomic units x, y and z) have a wide distribution across the southern, but not the northern hemisphere. While the drivers for such a polarised distribution of these operational taxonomic unit genotypes remains unclear, the occurrence of genetically variant Eimeria may pose a risk to food security and animal welfare in Europe and North America should these parasites spread to the northern hemisphere

Estimation of changes in the force of infection for intestinal and urogenital schistosomiasis in countries with Schistosomiasis Control Initiative-assisted programmes

The last decade has seen an expansion of national schistosomiasis control programmes in Africa based on large-scale preventative chemotherapy. In many areas this has resulted in considerable reductions in infection and morbidity levels in treated individuals. In this paper, we quantify changes in the force of infection (FOI), defined here as the per (human) host parasite establishment rate, to ascertain the impact on transmission of some of these programmes under the umbrella of the Schistosomiasis Control Initiative (SCI)