Spatial and seasonal contrasts of sedimentary organic matter in floodplain lakes of the central Amazon basin

In this study, we investigated the seasonal andspatial pattern of sedimentary organic matter (SOM) in fivefloodplain lakes of the central Amazon basin (Cabaliana,Janauaca, Canaçari, Mirituba and Curuai) which have differentmorphologies, hydrodynamics and vegetation coverages.Surface sediments were collected in four hydrologicalseasons: low water (LW), rising water (RW), high water(HW) and falling water (FW) in 2009 and 2010.We investigatedcommonly used bulk geochemical tracers such as theC V N ratio and the stable isotopic composition of organic carbon(?13Corg/. These results were compared with lignin phenolparameters as an indicator of vascular plant detritus andbranched glycerol dialkyl glycerol tetraethers (brGDGTs) totrace the input of soil organic matter (OM) from land to theaquatic settings. We also applied the crenarchaeol as an indicatorof aquatic (rivers and lakes) OM. Our data showed thatduring the RW and FW seasons, the surface sediments wereenriched in lignin and brGDGTs in comparison to other seasons.Our study also indicated that floodplain lake sedimentsprimarily consisted of allochthonous, C3 plant-derived OM.However, a downstream increase in C4 macrophyte-derivedOM contribution was observed along the gradient of increasingopen waters – i.e., from upstream to downstream. Accordingly,we attribute the temporal and spatial difference inSOM composition to the hydrological dynamics between thefloodplain lakes and the surrounding flooded forests

Fatty acid and stable isotope (delta C-13, delta N-15) signatures of particulate organic matter in the lower Amazon River : seasonal contrasts and connectivity between floodplain lakes and the mainstem

Fatty acid (FA) composition and stable isotope (delta C-13, delta N-15) signatures of four aquatic plants, plankton, sediment, soil and suspended particulate organic matter (SPOM) collected from open floodplain lakes (Varzea) and rivers of the central Brazilian Amazon basin were gathered during high and low water stages in 2009. SPOM from Varzea had a major contribution of autochthonous material from phytoplankton and C-3 aquatic plants. As shown from stable isotope composition of SPOM (delta C-13 -31.3 +/- 3.2 parts per thousand; delta N-15 3.6 +/- 1.5 parts per thousand), the C-4 aquatic phanerogam (delta C-13 -13.1 +/- 0.5 parts per thousand; delta N-15 4.1 +/- 1.7 parts per thousand) contribution appeared to be weak, although these plants were the most abundant macrophyte in the Varzea. During low water season, increasing concentration of 18:3 omega 3 was recorded in the SPOM of lakes. This FA, abundant mainly in the Varzea plants (up to 49% of total FAs), was due to the accumulation of their detritus in the ecosystem. This dry season, when connectivity with the river mainstem was restricted, was also characterized by a high concentration in the SPOM of the cyanobacteria marker 16:1 omega 7 (up to 21% of total FAs). The FA compositions of SPOM from the Amazon River also exhibited significant seasonal differences, in particular a higher concentration of 16:1 omega 7 and 18:3 omega 3 during the dry season. This suggests a seasonal contribution of autochthonous material produced in Varzea to the Amazon River SPOM

Tracing soil organic carbon in the lower Amazon River and its tributaries using GDGT distributions and bulk organic matter properties

In order to trace the transport of soil organic carbon (OC) in the lower Amazon basin, we investigated the distributions of crenarchaeol and branched glycerol dialkyl glycerol tetraethers (GDGTs) by analyzing riverbed sediments and river suspended particulate matter (SPM) collected in the Solimoes-Amazon River mainstem and its tributaries. The Branched and Isoprenoid Tetraether (BIT) index, a proxy for river-transported soil OC into the ocean, was determined from the distributions of these GDGTs. The GDGT-derived parameters were compared with other bulk geochemical data (i.e. C:N ratio and stable carbon isotopic composition). The GDGT-derived and bulk geochemical data indicate that riverine SPM and riverbed sediments in the lower Amazon River and its tributaries are a mixture of C-3 plant-derived soil OC and aquatic-derived OC. The branched GDGTs in the SPM and riverbed sediments did not predominantly originate from the high Andes soils (>2500 m in altitude) as was suggested previously. However, further constraint on the soil source area of branched GDGTs was hampered due to the deficiency of soil data from the lower montane forest areas in the Andes. Our study also revealed seasonal and interannual variation in GDGT composition as well as soil OC discharge, which was closely related to the hydrological cycle. By way of a simple binary mixing model using the flux-weighted BIT values at Obidos, the last gauging station in the Amazon River, we estimated that 70-80% of the POC pool in the river was derived of soil OC. However, care should be taken to use the BIT index since it showed a non-conservative behaviour along the river continuum due to the aquatic production of crenarchaeol. Further investigation using a continuous sampling strategy following the full hydrological cycle is required to fully understand how soil-derived GDGT signals are transformed in large tropical river systems through their transport pathway to the ocean

FBI-1 Can Stimulate HIV-1 Tat Activity and Is Targeted to a Novel Subnuclear Domain that Includes the Tat-P-TEFb—containing Nuclear Speckles

FBI-1 is a cellular POZ-domain–containing protein that binds to the HIV-1 LTR and associates with the HIV-1 transactivator protein Tat. Here we show that elevated levels of FBI-1 specifically stimulate Tat activity and that this effect is dependent on the same domain of FBI-1 that mediates Tat-FBI-1 association in vivo. FBI-1 also partially colocalizes with Tat and Tat's cellular cofactor, P-TEFb (Cdk9 and cyclin T1), at the splicing-factor–rich nuclear speckle domain. Further, a less-soluble population of FBI-1 distributes in a novel peripheral-speckle pattern of localization as well as in other nuclear regions. This distribution pattern is dependent on the FBI-1 DNA binding domain, on the presence of cellular DNA, and on active transcription. Taken together, these results suggest that FBI-1 is a cellular factor that preferentially associates with active chromatin and that can specifically stimulate Tat-activated HIV-1 transcription

Agroecological transformation for sustainable food systems : Insight on France-CGIAR research

This 26th dossier d’Agropolis is devoted to research and partnerships in agroecology. The French Commission for International Agricultural Research (CRAI) and Agropolis International, on behalf of CIRAD, INRAE and IRD and in partnership with CGIAR, has produced this new issue in the ‘Les dossiers d’Agropolis international’ series devoted to agroecology. This publication has been produced within the framework of the Action Plan signed by CGIAR and the French government on February 4th 2021 to strengthen French collaboration with CGIAR, where agroecology is highlighted as one of the three key priorities (alongside climate change, nutrition and food systems)