Molecular methods for the identification of Aspergillus species

Invasive aspergillosis (IA) is a leading cause of morbidity and mortality in immunocompromised hosts. In some institutions, species of Aspergillus less susceptible to amphotericin B than Aspergillus fumigatus are becoming more common, making an accurate identification of species important. However, species identification has traditionally relied on macroscopic colony characteristics and microscopic morphology, which may require several days of culture. Additional sub-culturing on specialized media may be required to induce conidia formation; in some cases conidia may never form, confounding identification. Therefore, rapid, nucleic acid-based methods that identify species of Aspergillus independent of morphology are now being developed to augment or replace phenotypic identification methods. The most successful methods to date have employed polymerase chain reaction (PCR) amplification of target sequences within the ribosomal RNA gene complex, including the 28S ribosomal subunit (D1-D2 region) and the internal transcribed spacers 1 and 2 (ITS1 and ITS2 regions). We therefore developed a PCR-based assay to differentiate medically important species of Aspergillus from one another, and from other opportunistic moulds and yeasts, by employing universal, pan-fungal primers directed to conserved ribosomal genes and species-specific DNA probes directed to the highly variable ITS2 region. Amplicons were then detected in a simple, colorimetric enzyme immunoassay format (PCR-EIA). DNA sequencing of the ITS1 and ITS2 regions and of the D1-D2 region was also conducted for the differentiation of species by comparative GenBank sequence analysis. The PCR-EIA method was found to be rapid, sensitive, and specific for the identification and differentiation of the most medically important species of Aspergillus. In addition, methods to identify species of Aspergillus by comparative GenBank sequence analysis were found to be more reliable using the ITS1 and ITS2 regions than the D1-D2 regio

Subtraction of test mass angular noise in the LISA Technology Package interferometer

We present recent sensitivity measurements of the LISA Technology Package interferometer with articulated mirrors as test masses, actuated by piezo-electric transducers. The required longitudinal displacement resolution of 9 pm/sqrt[Hz] above 3 mHz has been demonstrated with an angular noise that corresponds to the expected in on-orbit operation. The excess noise contribution of this test mass jitter onto the sensitive displacement readout was completely subtracted by fitting the angular interferometric data streams to the longitudinal displacement measurement. Thus, this cross-coupling constitutes no limitation to the required performance of the LISA Technology Package interferometry.Comment: Applied Physics B - Lasers and Optics (2008

Impact of analytic provenance in genome analysis

Many computational methods are available for assembly and annotation of newly sequenced microbial genomes. However, when new genomes are reported in the literature, there is frequently very little critical analysis of choices made during the sequence assembly and gene annotation stages. These choices have a direct impact on the biologically relevant products of a genomic analysis - for instance identification of common and differentiating regions among genomes in a comparison, or identification of enriched gene functional categories in a specific strain. Here, we examine the outcomes of different assembly and analysis steps in typical workflows in a comparison among strains of Vibrio vulnificus

Cyclotomic integers, fusion categories, and subfactors

Dimensions of objects in fusion categories are cyclotomic integers, hence number theoretic results have implications in the study of fusion categories and finite depth subfactors. We give two such applications. The first application is determining a complete list of numbers in the interval (2, 76/33) which can occur as the Frobenius-Perron dimension of an object in a fusion category. The smallest number on this list is realized in a new fusion category which is constructed in the appendix written by V. Ostrik, while the others are all realized by known examples. The second application proves that in any family of graphs obtained by adding a 2-valent tree to a fixed graph, either only finitely many graphs are principal graphs of subfactors or the family consists of the A_n or D_n Dynkin diagrams. This result is effective, and we apply it to several families arising in the classification of subfactors of index less then 5.Comment: 47 pages, with an appendix by Victor Ostri

Enhancement of spin Seebeck effect in Fe3O4/Pt thin films with α-Fe nanodroplets

In this study, we demonstrate an enhancement of the measured spin Seebeck coefficient in Fe3O4/Pt bilayer films due to an increase in Fe nanodroplets formed by pulsed laser deposition. Four bilayer films were deposited at the same time from a highly textured target, resulting in a general increase in droplet formation that was confirmed to be Fe rich by scanning electron microscope and transmission electron microscope-dispersive x-ray spectroscopy. Of these four films, there were two distinct groupings with differing density of α-Fe droplets, where the bilayer with higher droplet density exhibited a 64% increase in the measured spin Seebeck coefficient from 38 to 63 nV m/W

Additive sustainability footprint: Rationale and pilot evaluation of a tool for assessing the sustainable use of PVC additives

© 2019 The Authors. Journal of Vinyl and Additive Technology published by Wiley Periodicals, Inc. on behalf of Society of Plastics Engineers. PVC compounds contain additives necessary for processing and stability, and to modify the plastic's properties. The Europe-wide VinylPlus® voluntary commitment includes a challenge to make progress toward sustainable use of additives. Additive Sustainability Footprint (ASF) was developed to assess sustainable use of additives across the whole societal life cycles of finished PVC articles, taking a risk-based approach rather than simplistic hazard assessment. ASF addresses impacts across six life cycle assessment (LCA) stages established by ISO Standard 14040, using the four System Conditions (sustainability principles) developed by The Natural Step (TNS) covering social as well as environmental factors. For each LCA stage/System Condition combination, seven generically similar questions cover negative impacts (many covered by existing tools and regulations) but also the additive's positive contributions to the sustainability of finished articles. Positive contributions include ethical sourcing, longevity of service life, low maintenance inputs, and recyclability. Answers to questions determine a score, which can be combined across the life cycle and with other additives. Testing on a generic EU PVC window profile supported ASF development and demonstrated applicability and potential benefits including use for sensitivity analysis of alternative additives from different geopolitical regions or from recycled as opposed to virgin sources. J. VINYL ADDIT. TECHNOL., 2019. © 2019 The Authors. Journal of Vinyl and Additive Technology published by Wiley Periodicals, Inc. on behalf of Society of Plastics Engineers