IVOA Recommendation: An IVOA Standard for Unified Content Descriptors Version 1.1

This document describes the current understanding of the IVOA controlled vocabulary for describing astronomical data quantities, called Unified Content Descriptors (UCDs). The present document defines a new standard (named UCD1+) improving the first generation of UCDs (hereafter UCD1). The basic idea is to adopt a new syntax and vocabulary requiring little effort for people to adapt softwares already using UCD1. This document also addresses the questions of maintenance and evolution of the UCD1+. Examples of use cases within the VO, and tools for using UCD1+ are also described

IVOA Recommendation: The UCD1+ controlled vocabulary Version 1.23

This document describes the list of controlled terms used to build the Unified Content Descriptors, Version 1+ (UCD1+). The document describing the UCD1+ can be found at the URL: http://www.ivoa.net/Documents/latest/UCD.html. This document reviews the structure of the UCD1+ and presents the current vocabulary

Macromolecular composition of phloem exudate from white lupin (Lupinus albus L.)

<p>Abstract</p> <p>Background</p> <p>Members of the legume genus <it>Lupinus </it>exude phloem 'spontaneously' from incisions made to the vasculature. This feature was exploited to document macromolecules present in exudate of white lupin (<it>Lupinus albus </it>[L.] <it>cv </it>Kiev mutant), in particular to identify proteins and RNA molecules, including microRNA (miRNA).</p> <p>Results</p> <p>Proteomic analysis tentatively identified 86 proteins from 130 spots collected from 2D gels analysed by partial amino acid sequence determination using MS/MS. Analysis of a cDNA library constructed from exudate identified 609 unique transcripts. Both proteins and transcripts were classified into functional groups. The largest group of proteins comprised those involved in metabolism (24%), followed by protein modification/turnover (9%), redox regulation (8%), cell structural components (6%), stress and defence response (6%) with fewer in other groups. More prominent proteins were cyclophilin, ubiquitin, a glycine-rich RNA-binding protein, a group of proteins that comprise a glutathione/ascorbate-based mechanism to scavenge oxygen radicals, enzymes of glycolysis and other metabolism including methionine and ethylene synthesis. Potential signalling macromolecules such as transcripts encoding proteins mediating calcium level and the Flowering locus T (FT) protein were also identified. From around 330 small RNA clones (18-25 nt) 12 were identified as probable miRNAs by homology with those from other species. miRNA composition of exudate varied with site of collection (e.g. upward versus downward translocation streams) and nutrition (e.g. phosphorus level).</p> <p>Conclusions</p> <p>This is the first inventory of macromolecule composition of phloem exudate from a species in the Fabaceae, providing a basis to identify systemic signalling macromolecules with potential roles in regulating development, growth and stress response of legumes.</p

Thermodynamics of Two Dimensional Black Holes

Thermodynamic relations for a class of 2D black holes are obtained corresponding to observations made from finite spatial distances. We also study the thermodynamics of the charged version of the Jackiw-Teitelboim black holes found recently by Lowe and Strominger. Our results corroborate, in appropriate limits, to those obtained previously by other methods. We also analyze the stability of these black holes thermodynamically.Comment: 18 pages (One uncoded postscript file for figure appended), IP/BBSR/94-5

Gauss-Bonnet Black Holes and Heavy Fermion Metals

We consider charged black holes in Einstein-Gauss-Bonnet Gravity with Lifshitz boundary conditions. We find that this class of models can reproduce the anomalous specific heat of condensed matter systems exhibiting non-Fermi-liquid behaviour at low temperatures. We find that the temperature dependence of the Sommerfeld ratio is sensitive to the choice of Gauss-Bonnet coupling parameter for a given value of the Lifshitz scaling parameter. We propose that this class of models is dual to a class of models of non-Fermi-liquid systems proposed by Castro-Neto et.al.Comment: 17 pages, 6 figures, pdfLatex; small corrections to figure 10 in this versio

The VITAH Trial-Vitamin D Supplementation and Cardiac Autonomic Tone in Patients with End-Stage Kidney Disease on Hemodialysis: A Blinded, Randomized Controlled Trial

End-stage kidney disease (ESKD) patients are at increased cardiovascular risk. Vitamin D deficiency is associated with depressed heart rate variability (HRV), a risk factor depicting poor cardiac autonomic tone and risk of cardiovascular death. Vitamin D deficiency and depressed HRV are highly prevalent in the ESKD population. We aimed to determine the effects of oral vitamin D supplementation on HRV ((low frequency (LF) to high frequency (HF) spectral ratio (LF:HF)) in ESKD patients on hemodialysis. Fifty-six subjects with ESKD requiring hemodialysis were recruited from January 2013-March 2015 and randomized 1:1 to either conventional (0.25 mcg alfacalcidol plus placebo 3×/week) or intensive (0.25 mcg alfacalcidol 3×/week plus 50,000 international units (IU) ergocalciferol 1×/week) vitamin D for six weeks. The primary outcome was the change in LF:HF. There was no difference in LF:HF from baseline to six weeks for either vitamin D treatment (conventional: p = 0.9 vs. baseline; intensive: p = 0.07 vs. baseline). However, participants who remained vitamin D-deficient (25-hydroxyvitamin D < 20 ng/mL) after treatment demonstrated an increase in LF:HF (conventional: n = 13, ∆LF:HF: 0.20 ± 0.06, p < 0.001 vs. insufficient and sufficient vitamin D groups; intensive: n = 8: ∆LF:HF: 0.15 ± 0.06, p < 0.001 vs. sufficient vitamin D group). Overall, six weeks of conventional or intensive vitamin D only augmented LF:HF in ESKD subjects who remained vitamin D-deficient after treatment. Our findings potentially suggest that while activated vitamin D, with or without additional nutritional vitamin D, does not appear to improve cardiac autonomic tone in hemodialysis patients with insufficient or sufficient baseline vitamin D levels, supplementation in patients with severe vitamin D deficiency may improve cardiac autonomic tone in this higher risk sub-population of ESKD. TRIAL REGISTRATION: ClinicalTrials.gov, NCT01774812

Lessons Learned From Efforts To Restore Oyster Populations In Maryland And Virginia, 1990 To 2007

A century-long decline of the fishery for the Eastern oyster Crassostrea virginica (Gmelin, 1791) in Maryland and Virginia stimulated numerous efforts by federal, state, and nongovernmental agencies to restore oyster populations, with limited success. To learn from recent efforts, we analyzed records of restoration and monitoring activities undertaken between 1990 and 2007 by 12 such agencies. Of the 1,037 oyster bars (reefs, beds, or grounds) for which we obtained data, 43% experienced both restoration and monitoring, with the remaining experiencing either restoration or monitoring only. Restoration activities involved adding substrate (shell), transplanting hatchery or wild seed (juvenile oysters), bar cleaning, and bagless dredging. Of these, substrate addition and transplanting seed were common actions, with bar cleaning and bagless dredging relatively uncommon. Limited monitoring efforts, a lack of replicated postrestoration sampling, and the effects of harvest on some restored bars hinders evaluations of the effectiveness of restoration activities. Future restoration activities should have clearly articulated objectives and be coordinated among agencies and across bars, which should also be off limits to fishing. To evaluate restoration efforts, experimental designs should include replication, quantitative sampling, and robust sample sizes, supplemented by pre- and postrestoration monitoring

HIV-1 evades a Gag mutation that abrogates killer cell immunoglobulin-like receptor binding and disinhibits natural killer cells in infected individuals with KIR2DL2⁺/HLA-C*03: 04⁺ genotype

HIV–1 sequence variations impact binding of inhibitory killer cell immunoglobulin-like receptors (KIRs) to human leucocyte class I (HLA–I) molecules modulating NK cell function. HIV–1 strains encoding amino acids that mediate binding of inhibitory KIRs might therefore have a selective benefit in individuals expressing the respective KIR/HLA genotypes. Here we demonstrate that HIV–1 clade C avoids a p24 Gag mutation that abolishes binding of KIR2DL2 to HLA–C*03:04 and disinhibits NK cells in individual encoding for this genotype

Testing matter effects in propagation of atmospheric and long-baseline neutrinos

We quantify our current knowledge of the size and flavor structure of the matter effects in the evolution of atmospheric and long-baseline neutrinos based solely on the analysis of the corresponding neutrino data. To this aim we generalize the matter potential of the Standard Model by rescaling its strength, rotating it away from the e-e sector, and rephasing it with respect to the vacuum term. This phenomenological parametrization can be easily translated in terms of non-standard neutrino interactions in matter. We show that in the most general case, the strength of the potential cannot be determined solely by atmospheric and long-baseline data. However its flavor composition is very much constrained and the present determination of the neutrino masses and mixing is robust under its presence. We also present an update of the constraints arising from this analysis in the particular case in which no potential is present in the e-mu and e-tau sectors. Finally we quantify to what degree in this scenario it is possible to alleviate the tension between the oscillation results for neutrinos and antineutrinos in the MINOS experiment and show the relevance of the high energy part of the spectrum measured at MINOS.Comment: PDFLaTeX file using JHEP3 class, 25 pages, 7 figures included. Accepted for publication in JHE