The campsite dykes: A window into the early post-solidification history of the Skaergaard Intrusion, East Greenland

publication-status: Publishedtypes: ArticleThis is an open access article.The Skaergaard Intrusion of East Greenland is cut by several generations of dykes, the earliest of which is thought to have intruded shortly after solidification of the Skaergaard. Two ~ 6 m wide doleritic dykes from the earliest generation are exposed in the campsite area near Homestead Bay of the Skaergaard Peninsula. One of the dykes (the Campsite Dyke) locally contains abundant xenoliths of troctolitic cumulate. The other (the Plagioclase-phyric Dyke) contains abundant large plagioclase phenocrysts. Cross-cutting relationships between the two dykes are not exposed. The median clinopyroxene–plagioclase–plagioclase dihedral angle, Θcpp, in the Campsite Dyke is 88–89.5°, whereas that of the Plagioclase-phyric Dyke is 79°. Using an empirical relationship between Θcpp and the duration of crystallisation derived from dolerite sills, the observed Θcpp suggests that the Campsite Dyke is the older of the two, intruding the Skaergaard when it had cooled to 920–970 °C. The Plagioclase-phyric Dyke intruded later, once the Skaergaard had cooled below 670 °C. The troctolitic xenoliths divide into two separate groups. Type A xenoliths have microstructures similar to those of the Skaergaard Layered Series although mineral compositions are generally more primitive than those of the exposed cumulates — this type of xenolith is likely to have been derived from either deeper levels in the Skaergaard Intrusion or from a closely-related underlying magma chamber. One Type A xenolith has mineral compositions and Θcpp consistent with an origin in LZb of the Layered Series — this xenolith contains partially inverted pigeonite, suggesting that inversion of low-Ca pyroxene in the lower part of the Layered Series took place after the intrusion had completely solidified. Type B xenoliths are characterized by plagioclase containing large and abundant melt inclusions. Comparison with the microstructures of glassy crystalline nodules from Iceland points to a multi-stage cooling history for Type B xenoliths, consistent with step-wise entrainment of partially crystallised material from a deep chamber. Type B xenoliths are very unlikely to have been derived from deeper levels in the Skaergaard chamber.We thank Madeleine Humphreys for her assistance in collecting samples from the Campsite area. We are grateful to Monica Price of the Oxford University Natural History Museum for access to samples from the Wager East Greenland collection, and to Christian Tegner and Kent Brooks for loan of the sample from the Campsite Dyke chill zone. John Maclennan loaned us material from Iceland and we both thank him and David Neave for interesting discussions about their microstructures. Insightful and helpful comments from Tony Morse and an anonymous reviewer greatly improved an earlier version of this contribution. QEMSCAN® is a registered trademark of FEI Company. FEI Company sponsored the QEMSCAN® analyses, which were completed by Dr Gavyn Rollinson, at Camborne School of Mines, University of Exeter, UK. This work was supported by the Natural Environment Research Council [grant numbers NE/F020325/1 and NE/J021520/1]

Collisions of low-energy antiprotons with molecular hydrogen: ionization, excitation and stopping power

A time-dependent coupled-channel approach was used to calculate ionization, excitation, and energy-loss cross sections as well as energy spectra for antiproton and proton collisions with molecular hydrogen for impact energies 8 keV < E < 4000 keV.Comment: 4 pages, 4 figures, conference LEAP0

CT texture analysis can help differentiate between malignant and benign lymph nodes in the mediastinum in patients suspected for lung cancer

BACKGROUND: In patients with non-small-cell lung carcinoma NSCLC the lymph node staging in the mediastinum is important due to impact on management and prognosis. Computed tomography texture analysis (CTTA) is a postprocessing technique that can evaluate the heterogeneity of marked regions in images. PURPOSE: To evaluate if CTTA can differentiate between malignant and benign lymph nodes in a cohort of patients with suspected lung cancer. MATERIAL AND METHODS: With tissue sampling as reference standard, 46 lymph nodes from 29 patients were analyzed using CTTA. For each lymph node, CTTA was performed using a research software "TexRAD" by drawing a region of interest (ROI) on all available axial contrast-enhanced computed tomography (CT) slices covering the entire volume of the lymph node. Lymph node CTTA comprised image filtration-histogram analysis undertakes two stages: the first step comprised an application of a Laplacian of Gaussian filter to highlight fine to coarse textures within the ROI, followed by a quantification of textures via histogram analysis using mean gray-level intensity from the entire volume of the lymph nodes. RESULTS: CTTA demonstrated a statistically significant difference between the malignant and the benign lymph nodes (P = 0.001), and by binary logistic regression we obtained a sensitivity of 53% and specificity of 97% in the test population. The area under the receiver operating curve was 83.4% and reproducibility was excellent. CONCLUSION: CTTA may be helpful in differentiating between malignant and benign lymph nodes in the mediastinum in patients suspected for lung cancer, with a low intra-observer variance

Interaction between sodium chloride and texture in semi-hard Danish cheese as affected by brining time, dl -starter culture, chymosin type and cheese ripening

Reduced NaCl in semi-hard cheeses greatly affects textural and sensory properties. The interaction between cheese NaCl concentration and texture was affected by brining time (0–28 h), dl-starter cultures (C1, C2, and C3), chymosin type (bovine or camel), and ripening time (1–12 weeks). Cheese NaCl levels ranged from <0.15 to 1.90% (w/w). NaCl distribution changed during ripening; migration from cheese edge to core led to a more homogeneous NaCl distribution after 12 weeks. As ripening time increased, cheese firmness decreased. Cheeses with reduced NaCl were less firm and more compressible. Cheeses produced with C2 were significantly firmer than those produced with C1; cheeses produced with C3 had higher firmness and compressibility. In NaCl reduced cheese, use of camel chymosin as coagulant resulted in significantly higher firmness than that given using bovine chymosin. Overall, cheese NaCl content is reducible without significant textural impact using well-defined starter cultures and camel chymosin

Uranium isotope fractionation during slab dehydration beneath the Izu arc

Fluids released from subducted slabs impart characteristic geochemical signatures on volcanic arc magmas and residual slabs transported into the deeper mantle. Yet, the sources and transport mechanisms of trace elements released from the slab are speculative. We investigate fluids released from subducted slabs from the perspective of 238U/235U and radiogenic Pb isotope ratios in lavas from the Izu volcanic arc in the Pacific ocean. Izu arc lavas are fluid-dominated end-member type magmas that allow a close characterization of slab fluids. The Izu arc lavas have low 238U/235U ratios compared to the bulk Earth and mid-ocean ridge basalt (MORB). The low 238U/235U (δ238U = -0.46 to -0.33 ‰, where δ238U = 238U/235Usample/ 238U/235UCRM145 -1) is associated with slab-derived fluids low in Th/U that are added to the magma sources. The radiogenic Pb isotope ratios of the lavas form an array between ‘Indian’ type MORB and subducting sediments that is inconsistent with fluids derived from the altered mafic oceanic crust (AMOC). We infer that ‘fluid-mobile’ elements, including U and Pb are mobilized from largely unaltered, deeper sections of the mafic crust by migrating fluids that are derived from the dehydration of underlying serpentinites. Uranium is only fluid-mobile as UVI and needs to be oxidised from predominant UIV in unaltered magmatic rocks in order to be mobilised by fluids. Uranium isotope fractionation of ~ 0.2 ‰ in δ238U during this process is required to generate the low 238U/235U in the fluids. We propose that channelized fluid flow through the metamorphosed sheeted dyke and gabbroic sections of the mafic crust locally oxidizes and mobilizes U. We suggest that U isotope fractionation occurs within the fluid channels and is related to equilibrium isotope fractionation during the oxidation of U and the incorporation of UIV into secondary phases such as epidote, apatite and zircon that grow within the channels. These phases are predicted to carry isotopically heavy U into the deeper mantle beyond subduction zones. The δ238U is thus tracing the dehydration process of subducting slabs. Similar observations have been made for other, ‘stable isotope’ systems in different arcs and subduction-related metamorphic rocks, thus highlighting their potential for studying processes occurring within the slabs during subduction. This information is essential for understanding and the partitioning of elements between subducted slabs and the mantle wedge and constraining the role of subduction zones in global geochemical cycles.Leverhulme Trust Early Career Fellowshi

Volatility forecasting in the Chinese commodity futures market with intraday data

Given the unique institutional regulations in the Chinese commodity futures market as well as the characteristics of the data it generates, we utilize contracts with three months to delivery, the most liquid contract series, to systematically explore volatility forecasting for aluminum, copper, fuel oil, and sugar at the daily and three intraday sampling frequencies. We adopt popular volatility models in the literature and assess the forecasts obtained via these models against alternative proxies for the true volatility. Our results suggest that the long memory property is an essential feature in the commodity futures volatility dynamics and that the ARFIMA model consistently produces the best forecasts or forecasts not inferior to the best in statistical terms

Serum microRNA array analysis identifies miR-140-3p, miR-33b-3p and miR-671-3p as potential osteoarthritis biomarkers involved in metabolic processes.

Background: MicroRNAs (miRNAs) in circulation have emerged as promising biomarkers. In this study, we aimed to identify a circulating miRNA signature for osteoarthritis (OA) patients and in combination with bioinformatics analysis to evaluate the utility of selected differentially expressed miRNAs in the serum as potential OA biomarkers. Methods: Serum samples were collected from 12 primary OA patients, and 12 healthy individuals were screened using the Agilent Human miRNA Microarray platform interrogating 2549 miRNAs. Receiver Operating Characteristic (ROC) curves were constructed to evaluate the diagnostic performance of the deregulated miRNAs. Expression levels of selected miRNAs were validated by quantitative real-time PCR (qRT-PCR) in all serum and in articular cartilage samples from OA patients (n = 12) and healthy individuals (n = 7). Bioinformatics analysis was used to investigate the involved pathways and target genes for the above miRNAs. Results: We identified 279 differentially expressed miRNAs in the serum of OA patients compared to controls. Two hundred and five miRNAs (73.5%) were upregulated and 74 (26.5%) downregulated. ROC analysis revealed that 77 miRNAs had area under the curve (AUC) > 0.8 and p < 0.05. Bioinformatics analysis in the 77 miRNAs revealed that their target genes were involved in multiple signaling pathways associated with OA, among which FoxO, mTOR, Wnt, pI3K/akt, TGF-β signaling pathways, ECM-receptor interaction, and fatty acid biosynthesis. qRT-PCR validation in seven selected out of the 77 miRNAs revealed 3 significantly downregulated miRNAs (hsa-miR-33b-3p, hsa-miR-671-3p, and hsa-miR-140-3p) in the serum of OA patients, which were in silico predicted to be enriched in pathways involved in metabolic processes. Target-gene analysis of hsa-miR-140-3p, hsa-miR-33b-3p, and hsa-miR-671-3p revealed that InsR and IGFR1 were common targets of all three miRNAs, highlighting their involvement in regulation of metabolic processes that contribute to OA pathology. Hsa-miR-140-3p and hsa-miR-671-3p expression levels were consistently downregulated in articular cartilage of OA patients compared to healthy individuals. Conclusions: A serum miRNA signature was established for the first time using high density resolution miR-arrays in OA patients. We identified a three-miRNA signature, hsa-miR-140-3p, hsa-miR-671-3p, and hsa-miR-33b-3p, in the serum of OA patients, predicted to regulate metabolic processes, which could serve as a potential biomarker for the evaluation of OA risk and progression.Peer reviewedFinal Published versio

High (but Not Low) Urinary Iodine Excretion Is Predicted by Iodine Excretion Levels from Five Years Ago

Background: It has not been investigated whether there are associations between urinary iodine (UI) excretion measurements some years apart, nor whether such an association remains after adjustment for nutritional habits. The aim of the present study was to investigate the relation between iodine-creatinine ratio (ICR) at two measuring points 5 years apart. Methods: Data from 2,659 individuals from the Study of Health in Pomerania were analyzed. Analysis of covariance and Poisson regressions were used to associate baseline with follow-up ICR. Results: Baseline ICR was associated with follow-up ICR. Particularly, baseline ICR >300 mu g/g was related to an ICR >300 mu g/g at follow-up (relative risk, RR: 2.20; p < 0.001). The association was stronger in males (RR: 2.64; p < 0.001) than in females (RR: 1.64; p = 0.007). In contrast, baseline ICR <100 mu g/g was only associated with an ICR <100 mu g/g at follow-up in males when considering unadjusted ICR. Conclusions: We detected only a weak correlation with respect to low ICR. Studies assessing iodine status in a population should take into account that an individual with a low UI excretion in one measurement is not necessarily permanently iodine deficient. On the other hand, current high ICR could have been predicted by high ICR 5 years ago. Copyright (C) 2011 S. Karger AG, Base

Metastases or benign adrenal lesions in patients with histopathological verification of lung cancer: Can CT texture analysis distinguish?

INTRODUCTION: Distant metastases are found in the many of patients with lung cancer at time of diagnosis. Several diagnostic tools are available to distinguish between metastatic spread and benign lesions in the adrenal gland. However, all require additional diagnostic steps after the initial CT. The purpose of this study was to evaluate if texture analysis of CT-abnormal adrenal glands on the initial CT correctly differentiates between malignant and benign lesions in patients with confirmed lung cancer. MATERIALS AND METHODS: In this retrospective study 160 patients with endoscopic ultrasound-guided biopsy from the left adrenal gland and a contrast-enhanced CT in portal venous phase were assessed with texture analysis. A region of interest encircling the entire adrenal gland was used and from this dataset the slice with the largest cross section of the lesion was analyzed individually. RESULTS: Several texture parameters showed statistically significantly difference between metastatic and benign lesions but with considerable between-groups overlaps in confidence intervals. Sensitivity and specificity were assessed using ROC-curves, and in univariate binary logistic regression the area under the curve ranged from 36 % (Kurtosis 0.5) to 69 % (Entropy 2.5) compared to 73 % in the best fitting model using multivariate binary logistic regression. CONCLUSION: In lung cancer patients with abnormal adrenal gland at imaging, adrenal gland texture analyses appear not to have any role in discriminating benign from malignant lesions

The Skaergaard trough layering: sedimentation in a convecting magma chamber.

The upper parts of the floor cumulates of the Skaergaard Intrusion, East Greenland, contain abundant features known as troughs. The troughs are gently plunging synformal structures comprising stacks of crescentic modally graded layers with a sharply defined mafic base that grades upward into plagioclase-rich material. The origin of the troughs and layering is contentious, attributed variously to deposition of mineral grains by magmatic currents descending from the nearby walls, or to in situ development by localised recrystallisation during gravitationally-driven compaction. They are characterised by outcrop-scale features such as mineral lineations parallel to the trough axis, evidence of erosion and layer truncation associated with migration of the trough axis, and disruption of layering by syn-magmatic slumping. A detailed microstructural study of the modal trough layers, using electron backscatter diffraction together with geochemical mapping, demonstrates that these rocks do not record evidence for deformation by either dislocation creep or dissolution-reprecipitation. Instead, the troughs are characterised by the alignment of euhedral plagioclase crystals with unmodified primary igneous compositional zoning. We argue that the lineations and foliations are, therefore, a consequence of grain alignment during magmatic flow. Post-accumulation amplification of the modal layering occurred as a result of differential migration of an unmixed immiscible interstitial liquid, with upwards migration of the Si-rich conjugate into the plagioclase-rich upper part of the layers, whereas the Fe-rich immiscible conjugate remained in the mafic base. Both field and microstructure evidence support the origin of the troughs as the sites of repeated deposition from crystal-rich currents descending from the nearby chamber walls