Fission yeast Stn1 is crucial for semi-conservative replication at telomeres and subtelomeres

The CST complex is a phylogenetically conserved protein complex consisting of CTC1/Cdc13, Stn1 and Ten1 that protects telomeres on linear chromosomes. Deletion of the fission yeast homologs stn1 and ten1 results in complete telomere loss; however, the precise function of Stn1 is still largely unknown. Here, we have isolated a high-temperature sensitive stn1 allele (termed stn1-1). stn1-1 cells abruptly lost telomeric sequence almost completely at the restrictive temperature. The loss of chromosomal DNA happened without gradual telomere shortening, and extended to 30 kb from the ends of chromosomes. We found transient and modest single-stranded G-strand exposure, but did not find any evidence of checkpoint activation in stn1-1 at the restrictive temperature. When we probed neutral-neutral 2D gels for subtelomere regions, we found no Y-arc-shaped replication intermediates in cycling cells. We conclude that the loss of telomere and subtelomere DNAs in stn1-1 cells at the restrictive temperature is caused by very frequent replication fork collapses specifically in subtelomere regions. Furthermore, we identified two independent suppressor mutants of the high-temperature sensitivity of stn1-1: a multi-copy form of pmt3 and a deletion of rif1. Collectively, we propose that fission yeast Stn1 primarily safeguards the semi-conservative DNA replication at telomeres and subtelomeres

The evolution of cutting forces during slot milling of unidirectional carbon fiber reinforced polymer (UD-CFRP) composites

Cutting forces generated during traditional machining of fiber reinforced polymer composites play an important role in determining machined surface quality. The cutting force signals also provide a live indicator of the dynamic behavior of the chip formation process. Cutting forces in machining FRPs are dependent primarily on the instantaneous fiber cutting angle, chip thickness, cutting edge geometry and the current state of cutting edge wear. In this study, effects of the cutting edge rake angle and tool wear on cutting force evolution during slot milling of unidirectional carbon fiber reinforced polymer (UD-CFRP) composite was investigated. The cutting forces were measured in the feed and normal directions and then transformed to the tangential and radial directions of the tool path. A simplified cutting force model consisting of a shearing region and a pressing was used to determine the shearing and friction force components. This allowed determination of the friction coefficient on the clearance face of the tool. It was found that the friction coefficient varied significantly with rake angle and fiber cutting angle. The effect of rake angle on cutting forces is more discernable in the shearing region with positive rake angle tool providing the most efficient cutting. Furthermore, correlations were found between machining damage and the magnitude and orientation of the resultant shearing force

Epifluorescent microscopy of edge-trimmed carbon fibre-reinforced polymers : an alternative to computed tomography scanning

X-Ray computed tomography (XCT) can be used to detect edge-milled carbon fibre-reinforced polymer (CFRP) defects. Significantly this method is able to show subsurface defects that cannot be captured by traditional methods such as stylus-based or more novel areal methods of surface quality measurement. While useful, this method can be prohibitive due to high equipment cost, scanning time and image resolution. XCT can often produce artefacts which falsely predict damage or obscure damage and depending on machine X-ray power often cannot resolve damage to fibre diameter which is critical when observing milled quality of the surface/subsurface. This study utilises epifluorescent (EF) optical microscopy to provide high-quality optical images as an alternative to XCT to observe through-depth damage of CFRP materials. The method of computing the novel damage criteria is presented, as well as the validation of the method which compares EF to XCT. Subsurface damage of fabric and unidirectional (UD) materials in 0°, 45°, 90° and −45° orientations to the cutting edge is observed to demonstrate typical defects. A novel metric resulting from the EF method provides a total area of damage when compared to a theoretically straight cut across the face of the edge-milled CFRP. The method shows that different subsurface damage exists for different fibre orientations to the cutting edge, highlighting the clear need for through-depth analysis of machined edges. In addition, the method is shown to be a suitable alternative to XCT with scope for further development of industrial aerospace and automotive quality control of machined CFRP parts

List of New Names of Plant Pathogenic Bacteria (2008-2010)

In 2010 the International Society of Plant Pathology Committee on the Taxonomy of Plant Pathogenic Bacteria published the Comprehensive List of Names of Plant Pathogenic Bacteria, 1980-2007 to provide an authoritative register of names of plant pathogens. In this manuscript we update the list of names by cataloguing names published from 2008 to 2010. We provide those names that have been validly and effectively published in this time frame, the proposed names that we judged to be invalid and names published earlier that did not make the previous lists. We also discuss problems that arise in the naming of strains that fall into the status Candidatus and nomenclatural problems in the genus Xanthomonas

List of New Names of Plant Pathogenic Bacteria (2011-2012)

The International Society of Plant Pathology Committee on the Taxonomy of Plant Pathogenic Bacteria has responsibility to evaluate the names of newly proposed pathovars for adherence to the International Standards for Naming Pathovars of Phytopathogenic Bacteria. Currently, the Comprehensive List of Names and the List of New Names of Plant Pathogenic Bacteria provide the authoritative register of names of bacterial plant pathogens. In this manuscript we up-date the list of names by cataloguing and evaluating names of plant pathogenic bacteria published in 2011 and 2012. We provide those names that have been validly and effectively published in this time frame, the proposed names that we judged to be invalid, and names published earlier that did not make the previous lists

Tryptophan Oxidative Metabolism Catalyzed by Geobacillus Stearothermophilus: A Thermophile Isolated from Kuwait Soil Contaminated with Petroleum Hydrocarbons

Tryptophan metabolism has been extensively studied in humans as well as in soil. Its metabolism takes place mainly through kynurenine pathway yielding hydroxylated, deaminated and many other products of physiological significance. However, tryptophan metabolism has not been studied in an isolated thermophilic bacterium. Geobacillus stearothermophilus is a local thermophile isolated from Kuwait desert soil contaminated with petroleum hydrocarbons. The bacterium grows well at 65 °C in 0.05 M phosphate buffer (pH 7), when supplied with organic compounds as a carbon source and has a good potential for transformation of steroids and related molecules. In the present study, we used tryptophan ethyl ester as a carbon source for the bacterium to study the catabolism of the amino acid at pH 5 and pH 7. In this endeavor, we have resolved twenty one transformation products of tryptophan by GC/LC and have identified them through their mass spectral fragmentation

Microbial Community Composition of Two Environmentally Conserved Estuaries in the Midorikawa River and Shirakawa River

To provide a general overview of the microbial communities in environmentally conserved estuaries, the top 5 cm of sediment was sampled from the sandy estuary of the Shirakawa River and from the muddy estuary of the Midorikawa River. Higher amounts of organic matter were detected in the Midorikawa estuary sample than in the Shirakawa estuary sample. Measurement of redox potential revealed that the Shirakawa estuary was aerobic and the Midorikawa estuary was much less aerobic. Clone analysis was performed by targeting partial 16S rRNA gene sequences and using extracted DNA from the samples as a template. Various bacteria were detected, among which Gammaproteobacteria was dominant at both estuaries. Unclassified clones were detected in the Gammaproteobacteria group, mainly among samples from the Midorikawa estuary. Other detected bacterial groups were Alphaproteobacteria, Deltaproteobacteria, Chloroflexi, Actinobacteria, and Bacteroidetes. All the Deltaproteobacteria clones were anaerobic sulfate-reducing bacteria. Those aerobic and anaerobic bacteria coexisted in the top 5 cm of the estuary sediments indicating the surface layer have active sulfur and carbon cycle. Abundance of aerobic Gammaproteobacteria may be an indicator for conserved estuaries

Migratory Typing: Ten Years Later

In this day and age, many developers work on large, untyped code repositories. Even if they are the creators of the code, they notice that they have to figure out the equivalent of method signatures every time they work on old code. This step is time consuming and error prone. Ten years ago, the two lead authors outlined a linguistic solution to this problem. Specifically they proposed the creation of typed twins for untyped programming languages so that developers could migrate scripts from the untyped world to a typed one in an incremental manner. Their programmatic paper also spelled out three guiding design principles concerning the acceptance of grown idioms, the soundness of mixed-typed programs, and the units of migration. This paper revisits this idea of a migratory type system as implemented for Racket. It explains how the design principles have been used to produce the Typed Racket twin and presents an assessment of the project\u27s status, highlighting successes and failures

Depression and sickness behavior are Janus-faced responses to shared inflammatory pathways

It is of considerable translational importance whether depression is a form or a consequence of sickness behavior. Sickness behavior is a behavioral complex induced by infections and immune trauma and mediated by pro-inflammatory cytokines. It is an adaptive response that enhances recovery by conserving energy to combat acute inflammation. There are considerable phenomenological similarities between sickness behavior and depression, for example, behavioral inhibition, anorexia and weight loss, and melancholic (anhedonia), physio-somatic (fatigue, hyperalgesia, malaise), anxiety and neurocognitive symptoms. In clinical depression, however, a transition occurs to sensitization of immuno-inflammatory pathways, progressive damage by oxidative and nitrosative stress to lipids, proteins, and DNA, and autoimmune responses directed against self-epitopes. The latter mechanisms are the substrate of a neuroprogressive process, whereby multiple depressive episodes cause neural tissue damage and consequent functional and cognitive sequelae. Thus, shared immuno-inflammatory pathways underpin the physiology of sickness behavior and the pathophysiology of clinical depression explaining their partially overlapping phenomenology. Inflammation may provoke a Janus-faced response with a good, acute side, generating protective inflammation through sickness behavior and a bad, chronic side, for example, clinical depression, a lifelong disorder with positive feedback loops between (neuro)inflammation and (neuro)degenerative processes following less well defined triggers

Intrinsic pinning property of FeSe0.5Te0.5

The intrinsic pinning properties of FeSe0.5Te0.5, which is the superconductor with Tc of about 14 K, were studied by the analysis of magnetization curves by the extended critical state model. In the magnetization measurements by SQUID magnetometer, the external magnetic fields were applied parallel and perpendicular to c-axis of the sample. The critical current density Jc's under the perpendicular field of 1 T were estimated by using the Kimishima model as about 1.6 x 10^4, 8.8 x 10^3, 4.1 x 10^3, and 1.5 x 10^3 A/cm2 at 5, 7, 9, and 11 K, respectively, and the temperature dependence of Jc could be fitted with the exponential law of Jc(0)xexp(-{\alpha}T /Tc) up to 9 K and power law of Jc(0)x(1-T / Tc)n near Tc.Comment: 19 pages, 7 figure