Influence of Apple stem grooving virus on Malus sieboldii-derived apple proliferation resistant rootstocks

Apple stem grooving virus (ASGV, Capillovirus) is widely spread in apple growing regions. As it causes no symptoms on most cultivated apple varieties and rootstocks it is considered latent in Malus x domestica. In Asia, however, ASGV has been found associated with topworking disease of apple rootstocks originating from Malus sieboldii. Recently, M. sieboldii and its hybrids have gained new interest in Europe as they confer resistance to apple proliferation (AP) disease. A new breeding program aiming to develop AP-resistant rootstocks of agronomic value for modern apple culture, reported unexpected tree decline which was to be associated with ASGV. As little information is available on the variability of ASGV isolates in Germany, the complete genome of a German isolate of ASGV associated with tree decline was cloned and sequenced. Sequence comparisons with available ASGV isolates revealed two regions of high variability in the genome. The genetic variability of additional isolates from Germany and other countries were collected and the variable areas characterised. In addition ASGV was successfully maintained in micropropagated apple trees and could be transmitted by in vitro grafting to various genotypes, making it possible to study in vitro the effect of the virus and virus/phytoplama combination on M. sieboldii-derived genotypes. Keywords: Latent apple viruses, Candidatus Phytoplasma mali, micropropagation, in vitro grafting, genetic variabilit

Observation of mesospheric air inside the arctic stratospheric polar vortex in early 2003

During several balloon flights inside the Arctic polar vortex in early 2003, unusual trace gas distributions were observed, which indicate a strong influence of mesospheric air in the stratosphere. The tuneable diode laser (TDL) instrument SPIRALE (Spectroscopie InFrarouge par Absorption de Lasers Embarqués) measured unusually high CO values (up to 600 ppb) on 27 January at about 30 km altitude. The cryosampler BONBON sampled air masses with very high molecular Hydrogen, extremely low SF6 and enhanced CO values on 6 March at about 25 km altitude. Finally, the MIPAS (Michelson Interferometer for Passive Atmospheric Sounding) Fourier Transform Infra-Red (FTIR) spectrometer showed NOy values which are significantly higher than NOy* (the NOy derived from a correlation between N2O and NOy under undisturbed conditions), on 21 and 22 March in a layer centred at 22 km altitude. Thus, the mesospheric air seems to have been present in a layer descending from about 30 km in late January to 25 km altitude in early March and about 22 km altitude on 20 March. We present corroborating evidence from a model study using the KASIMA (KArlsruhe Simulation model of the Middle Atmosphere) model that also shows a layer of mesospheric air, which descended into the stratosphere in November and early December 2002, before the minor warming which occurred in late December 2002 lead to a descent of upper stratospheric air, cutting of a layer in which mesospheric air is present. This layer then descended inside the vortex over the course of the winter. The same feature is found in trajectory calculations, based on a large number of trajectories started in the vicinity of the observations on 6 March. Based on the difference between the mean age derived from SF6 (which has an irreversible mesospheric loss) and from CO2 (whose mesospheric loss is much smaller and reversible) we estimate that the fraction of mesospheric air in the layer observed on 6 March, must have been somewhere between 35% and 100%

Epilithic diatom assemblages and environmental quality of the Su Gologone karst spring (centraleastern Sardinia, Italy)

Karst springs are considered among the most vulnerable groundwater-dependent ecosystems. Despite their ecological value and importance as strategic water sources, Mediterranean karst springs are still poorly investigated. The aim of this study was to analyse the epilithic diatom assemblages and to test their usefulness as indicators of environmental quality on the Su Gologone spring (central-eastern Sardinia, Italy), a biotope of great natural value and a precious source of drinking water. A total of 89 diatom taxa were found with 25 new records for Sardinian running waters. Species richness, Shannon-Wiener and Pielou indices showed good biotic integrity. The dominant taxa were alkaliphilous, halophobous-oligohalobous exigent, xeno-oligosaprobic and characteristic of oligotrophic waters. The eutrophication/pollution index − diatom based (EPI-D) and the Navicula Nitzschia Surirella indices indicated respectively an excellent/good biological water quality and a low physical disturbance. However, the biological and chemical oxygen demand, and the microbiological variables (E. coli, fecal and total coliforms) revealed an organic contamination of the water, although moderate. The judgment provided by the EPI-D should be verified after updating of the index. In fact, 10 taxa found in this study are not currently considered by the EPI-D method

The Mass Spectrum of Light and Heavy Hadrons from Improved Lattice Actions

We use improved lattice actions for glue, light quarks and heavy quarks for which we use lattice NRQCD to compute hadron masses. Our results are in good agreement with experiment, except for charmed hadrons. It seems that charmed quar ks are not well approximated as heavy quarks nor as light quarks.Comment: 14 pages +6 pages figures, plain-tex fil

Nitrogen and phosphorus loads to temperate seepage lakes associated with allochthonous dissolved organic carbon loads

Terrestrial loads of dissolved organic matter (DOM) have increased in recent years in many north temperate lakes. While much of the focus on the “browning” phenomena has been on its consequences for carbon cycling, much less is known about how it influences nutrient loading to lakes. We characterize potential loads of nitrogen and phosphorus to seepage lakes in northern Wisconsin, USA, based on a laboratory soil leaching experiment and a model that includes landscape cover and watershed area. In these seepage lakes, nutrient concentrations are positively correlated with dissolved organic carbon concentrations (nitrogen: r = 0.68, phosphorus: r = 0.54). Using long‐term records of browning, we found that dissolved organic matter‐associated nutrient loadings may have resulted in substantial increases in nitrogen and phosphorus in seepage lakes and could account for currently observed nutrient concentrations in the lake. “Silent” nutrient loadings to brown‐water lakes may lead to future water‐quality concerns. PLAIN LANGUAGE SUMMARY: The color of many temperate lakes is changing; some lakes are becoming more darkly stained brown. The tea‐colored stain is due to dissolved organic matter from the surrounding landscape. Much of the research related to the causes and consequences of increased staining, or “brownification,” relate to its connection to the carbon cycle. However, by examining long‐term lake chemical records, analyzing the properties of the organic compounds, and modeling potential flows of the compounds, we find that carbon is not the only element that is influenced by browning. Nitrogen and phosphorus, two nutrients important to growth of organisms at the base of the food web, may also be increasing in lakes due to brownification."Funding for this research was supported by the Northern Research Station and the Chequamegon-Nicolet National Forest (CNNF) of the United States Department of Agriculture (USDA) Forest Service and a National Science Foundation (NSF) grant to the University of Wisconsin-Madison to support the North Temperate Lakes Long-Term Ecological Research (NTLLTER) Site (DEB-#1440297)."https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2018GL07721

CCl 4 distribution derived from MIPAS ESA v7 data: intercomparisons, trend, and lifetime estimation

Abstract. Atmospheric emissions of carbon tetrachloride (CCl4) are regulated by the Montreal Protocol due to its role as a strong ozone-depleting substance. The molecule has been the subject of recent increased interest as a consequence of the so-called mystery of CCl4, the discrepancy between atmospheric observations and reported production and consumption. Surface measurements of CCl4 atmospheric concentrations have declined at a rate almost 3 times lower than its lifetime-limited rate, suggesting persistent atmospheric emissions despite the ban. In this paper, we study CCl4 vertical and zonal distributions in the upper troposphere and lower stratosphere (including the photolytic loss region, 70–20 hPa), its trend, and its stratospheric lifetime using measurements from the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS), which operated onboard the ENVISAT satellite from 2002 to 2012. Specifically, we use the MIPAS data product generated with Version 7 of the Level 2 algorithm operated by the European Space Agency.The CCl4 zonal means show features typical of long-lived species of anthropogenic origin that are destroyed primarily in the stratosphere, with larger quantities in the troposphere and a monotonic decrease with increasing altitude in the stratosphere. MIPAS CCl4 measurements have been compared with independent measurements from other satellite and balloon-borne remote sounders, showing a good agreement between the different datasets.CCl4 trends are calculated as a function of both latitude and altitude. Negative trends of about −10 to −15 pptv decade−1 (−10 to −30 % decade−1) are found at all latitudes in the upper troposphere–lower stratosphere region, apart from a region in the southern midlatitudes between 50 and 10 hPa where the trend is positive with values around 5–10 pptv decade−1 (15–20 % decade−1). At the lowest altitudes sounded by MIPAS, we find trends consistent with those determined on the basis of long-term ground-based measurements (−10 to −13 pptv decade−1). For higher altitudes, the trend shows a pronounced asymmetry between the Northern and Southern hemispheres, and the magnitude of the decline rate increases with altitude. We use a simplified model assuming tracer–tracer linear correlations to determine CCl4 lifetime in the lower stratosphere. The calculation provides a global average lifetime of 47 (39–61) years, considering CFC-11 as the reference tracer. This value is consistent with the most recent literature result of 44 (36–58) years

Measuring the 3D Clustering of Undetected Galaxies Through Cross Correlation of their Cumulative Flux Fluctuations from Multiple Spectral Lines

We discuss a method for detecting the emission from high redshift galaxies by cross correlating flux fluctuations from multiple spectral lines. If one can fit and subtract away the continuum emission with a smooth function of frequency, the remaining signal contains fluctuations of flux with frequency and angle from line emitting galaxies. Over a particular small range of observed frequencies, these fluctuations will originate from sources corresponding to a series of different redshifts, one for each emission line. It is possible to statistically isolate the fluctuations at a particular redshift by cross correlating emission originating from the same redshift, but in different emission lines. This technique will allow detection of clustering fluctuations from the faintest galaxies which individually cannot be detected, but which contribute substantially to the total signal due to their large numbers. We describe these fluctuations quantitatively through the line cross power spectrum. As an example of a particular application of this technique, we calculate the signal-to-noise ratio for a measurement of the cross power spectrum of the OI(63 micron) and OIII(52 micron) fine structure lines with the proposed Space Infrared Telescope for Cosmology and Astrophysics. We find that the cross power spectrum can be measured beyond a redshift of z=8. Such observations could constrain the evolution of the metallicity, bias, and duty cycle of faint galaxies at high redshifts and may also be sensitive to the reionization history through its effect on the minimum mass of galaxies. As another example, we consider the cross power spectrum of CO line emission measured with a large ground based telescope like CCAT and 21-cm radiation originating from hydrogen in galaxies after reionization with an interferometer similar in scale to MWA, but optimized for post-reionization redshifts.Comment: 21 pages, 6 figures; Replaced with version accepted by JCAP; Added an example of cross correlating CO line emission and 21cm line emission from galaxies after reionizatio