On the mean field dynamo with Hall effect

We study in the present paper how Hall effect modifies the quenching process of the electromotive force (e.m.f.) in Mean Field Dynamo (MFD) theories. We write down the evolution equations for the e.m.f. and for the large and small scale magnetic helicity, treat Hall effect as a perturbation and integrate the resulting equations assuming boundary conditions such that the total divergencies vanish. For force-free large scale magnetic fields, Hall effect acts by coupling the small scale velocity and magnetic fields. For the range of parameters considered, the overall effect is a stronger quenching of the e.m.f. than in standard MHD and a damping of the inverse cascade of magnetic helicity. In astrophysical environments characterized by the parameters considered here, Hall effect would produce an earlier quenching of the e.m.f. and consequently a weaker large scale magnetic field.Comment: 8 pages, 4 figures. Accepted by A&

Thermodynamic Entropy And The Accessible States of Some Simple Systems

Comparison of the thermodynamic entropy with Boltzmann's principle shows that under conditions of constant volume the total number of arrangements in simple thermodynamic systems with temperature-independent heat capacities is TC/k. A physical interpretation of this function is given for three such systems; an ideal monatomic gas, an ideal gas of diatomic molecules with rotational motion, and a solid in the Dulong-Petit limit of high temperature. T1/2 emerges as a natural measure of the number of accessible states for a single particle in one dimension. Extension to N particles in three dimensions leads to TC/k as the total number of possible arrangements or microstates. The different microstates of the system are thus shown a posteriori to be equally probable, with probability T-C/k, which implies that for the purposes of counting states the particles of the gas are distinguishable. The most probable energy state of the system is determined by the degeneracy of the microstates.Comment: 9 pages, 1 figur

Accretion Disks and Dynamos: Toward a Unified Mean Field Theory

Conversion of gravitational energy into radiation in accretion discs and the origin of large scale magnetic fields in astrophysical rotators have often been distinct topics of research. In semi-analytic work on both problems it has been useful to presume large scale symmetries, necessarily resulting in mean field theories. MHD turbulence makes the underlying systems locally asymmetric and nonlinear. Synergy between theory and simulations should aim for the development of practical mean field models that capture essential physics and can be used for observational modeling. Mean field dynamo (MFD) theory and alpha-viscosity accretion theory exemplify such ongoing pursuits. 21st century MFD theory has more nonlinear predictive power compared to 20th century MFD theory, whereas accretion theory is still in a 20th century state. In fact, insights from MFD theory are applicable to accretion theory and the two are artificially separated pieces of what should be a single theory. I discuss pieces of progress that provide clues toward a unified theory. A key concept is that large scale magnetic fields can be sustained via local or global magnetic helicity fluxes or via relaxation of small scale magnetic fluctuations, without the kinetic helicity driver of 20th century textbooks. These concepts may help explain the formation of large scale fields that supply non-local angular momentum transport via coronae and jets in a unified theory of accretion and dynamos. In diagnosing the role of helicities and helicity fluxes in disk simulations, each disk hemisphere should be studied separately to avoid being misled by cancelation that occurs as a result of reflection asymmetry. The fraction of helical field energy in disks is expected to be small compared to the total field in each hemisphere as a result of shear, but can still be essential for large scale dynamo action.Comment: For the Proceedings of the Third International Conference and Advanced School "Turbulent Mixing and Beyond," TMB-2011 held on 21 - 28 August 2011 at the Abdus Salam International Centre for Theoretical Physics, Trieste, http://users.ictp.it/~tmb/index2011.html Italy, To Appear in Physica Scripta (corrected small items to match version in print

Asymptotics of capture zone distributions in a fragmentation-based model of submonolayer deposition

We consider the asymptotics of the distribution of the capture zones associated with the islands nucleated during submonolayer deposition onto a one-dimensional substrate. We use a convolution of the distribution of inter-island gaps, the asymptotics of which is known for a class of nucleation models, to derive the asymptotics for the capture zones. The results are in broad agreement with published Monte Carlo simulation data (O'Neill et al., 2012) [13]

Molecular gyroscopes and biological effects of weak ELF magnetic fields

Extremely-low-frequency magnetic fields are known to affect biological systems. In many cases, biological effects display `windows' in biologically effective parameters of the magnetic fields: most dramatic is the fact that relatively intense magnetic fields sometimes do not cause appreciable effect, while smaller fields of the order of 10--100 $\mu$T do. Linear resonant physical processes do not explain frequency windows in this case. Amplitude window phenomena suggest a nonlinear physical mechanism. Such a nonlinear mechanism has been proposed recently to explain those `windows'. It considers quantum-interference effects on protein-bound substrate ions. Magnetic fields cause an interference of ion quantum states and change the probability of ion-protein dissociation. This ion-interference mechanism predicts specific magnetic-field frequency and amplitude windows within which biological effects occur. It agrees with a lot of experiments. However, according to the mechanism, the lifetime $\Gamma^{-1}$ of ion quantum states within a protein cavity should be of unrealistic value, more than 0.01 s for frequency band 10--100 Hz. In this paper, a biophysical mechanism has been proposed that (i) retains the attractive features of the ion interference mechanism and (ii) uses the principles of gyroscopic motion and removes the necessity to postulate large lifetimes. The mechanism considers dynamics of the density matrix of the molecular groups, which are attached to the walls of protein cavities by two covalent bonds, i.e., molecular gyroscopes. Numerical computations have shown almost free rotations of the molecular gyros. The relaxation time due to van der Waals forces was about 0.01 s for the cavity size of 28 angstr\"{o}ms.Comment: 10 pages, 7 figure

Ab-initio study of structure and dynamics properties of crystalline ice

We investigated the structural and dynamical properties of a tetrahedrally coordinated crystalline ice from first principles based on density functional theory within the generalized gradient approximation with the projected augmented wave method. First, we report the structural behaviour of ice at finite temperatures based on the analysis of radial distribution functions obtained by molecular dynamics simulations. The results show how the ordering of the hydrogen bonding breaks down in the tetrahedral network of ice with entropy increase in agreement with the neutron diffraction data. We also calculated the phonon spectra of ice in a 3x1x1 supercell by using the direct method. So far, due to the direct method used in this calculation, the phonon spectra is obtained without taking into account the effect of polarization arising from dipole-dipole interactions of water molecules which is expected to yield the splitting of longitudinal and transverse optic modes at the Gamma-point. The calculated longitudinal acoustic velocities from the initial slopes of the acoustic mode is in a reasonable agreement with the neutron scatering data. The analysis of the vibrational density of states shows the existence of a boson peak at low energy of translational region a characteristic common to amorphous systems.Comment: International symposium on structure and dynamics of heterogeneous system SDHS'0

Low-Frequency Oscillations in Global Simulations of Black Hole Accretion

We have identified the presence of large-scale, low-frequency dynamo cycles in a long-duration, global, magnetohydrodynamic (MHD) simulation of black hole accretion. Such cycles had been seen previously in local shearing box simulations, but we discuss their evolution over 1,500 inner disk orbits of a global pi/4 disk wedge spanning two orders of magnitude in radius and seven scale heights in elevation above/below the disk midplane. The observed cycles manifest themselves as oscillations in azimuthal magnetic field occupying a region that extends into a low-density corona several scale heights above the disk. The cycle frequencies are ten to twenty times lower than the local orbital frequency, making them potentially interesting sources of low-frequency variability when scaled to real astrophysical systems. Furthermore, power spectra derived from the full time series reveal that the cycles manifest themselves at discrete, narrow-band frequencies that often share power across broad radial ranges. We explore possible connections between these simulated cycles and observed low-frequency quasi-periodic oscillations (LFQPOs) in galactic black hole binary systems, finding that dynamo cycles have the appropriate frequencies and are located in a spatial region associated with X-ray emission in real systems. Derived observational proxies, however, fail to feature peaks with RMS amplitudes comparable to LFQPO observations, suggesting that further theoretical work and more sophisticated simulations will be required to form a complete theory of dynamo-driven LFQPOs. Nonetheless, this work clearly illustrates that global MHD dynamos exhibit quasi-periodic behavior on timescales much longer than those derived from test particle considerations.Comment: Version accepted to The Astrophysical Journal, 8 pages, 7 figure

Comparing Poynting flux dominated magnetic tower jets with kinetic-energy dominated jets

Magnetic Towers represent one of two fundamental forms of MHD outflows. Driven by magnetic pressure gradients, these flows have been less well studied than magneto-centrifugally launched jets even though magnetic towers may well be as common. Here we present new results exploring the behavior and evolution of magnetic tower outflows and demonstrate their connection with pulsed power experimental studies and purely hydrodynamic jets which might represent the asymptotic propagation regimes of magneto-centrifugally launched jets. High-resolution AMR MHD simulations (using the AstroBEAR code) provide insights into the underlying physics of magnetic towers and help us constrain models of their propagation. Our simulations have been designed to explore the effects of thermal energy losses and rotation on both tower flows and their hydro counterparts. We find these parameters have significant effects on the stability of magnetic towers, but mild effects on the stability of hydro jets. Current-driven perturbations in the Poynting Flux Dominated (PDF) towers are shown to be amplified in both the cooling and rotating cases. Our studies of the long term evolution of the towers show that the formation of weakly magnetized central jets within the tower are broken up by these instabilities becoming a series of collimated clumps which magnetization properties vary over time. In addition to discussing these results in light of laboratory experiments, we address their relevance to astrophysical observations of young star jets and outflow from highly evolved solar type stars.Comment: 11 pages, 4 figures, accepted for publication in the High Energy Density Physics Journal corresponding to the proceedings of the 9th International Conference on High Energy Density Laboratory Astrophysics, May 4, 2012, Tallahassee Florid