Typhoon 9707 observations with the MU radar and L-band boundary layer radar

International audienceTyphoon 9707 (Opal) was observed with the VHF-band Middle and Upper atmosphere (MU) radar, an L-band boundary layer radar (BLR), and a vertical-pointing C-band meteorological radar at the Shigaraki MU Observatory in Shiga prefecture, Japan on 20 June 1997. The typhoon center passed about 80 km southeast from the radar site. Mesoscale precipitating clouds developed due to warm-moist airmass transport from the typhoon, and passed over the MU radar site with easterly or southeasterly winds. We primarily present the wind behaviour including the vertical component which a conventional meteorological Doppler radar cannot directly observe, and discuss the relationship between the wind behaviour of the typhoon and the precipitating system. To investigate the dynamic structure of the typhoon, the observed wind was divided into radial and tangential wind components under the assumption that the typhoon had an axi-symmetric structure. Altitude range of outflow ascended from 1?3 km to 2?10 km with increasing distance (within 80?260 km range) from the typhoon center, and in-flow was observed above and below the outflow. Outflow and inflow were associated with updraft and downdraft, respectively. In the tangential wind, the maximum speed of counterclockwise winds was confirmed at 1?2 km altitudes. Based on the vertical velocity and the reflectivity obtained with the MU radar and the C-band meteorological radar, respectively, precipitating clouds, accompanied by the wind behaviour of the typhoon, were classified into stratiform and convective precipitating clouds. In the stratiform precipitating clouds, a vertical shear of radial wind and the maximum speed of counterclockwise wind were observed. There was a strong reflectivity layer called a ?bright band' around the 4.2 km altitude. We confirmed strong updrafts and down-drafts below and above it, respectively, and the existence of a relatively dry layer around the bright band level from radiosonde soundings. In the convective precipitating clouds, the regions of strong and weak reflectivities were well associated with those of updraft and downdraft, respectively

Combined wind profiler-weather radar observations of orographic rainband around Kyushu, Japan in the Baiu season

International audienceA special observation campaign (X-BAIU), using various instruments (wind profilers, C-band weather radars, X-band Doppler radars, rawinsondes, etc.), was carried out in Kyushu (western Japan) during the Baiu season, from 1998 to 2002. In the X-BAIU-99 and -02 observations, a line-shaped orographic rainband extending northeastward from the Koshikijima Islands appeared in the low-level strong wind with warm-moist airs. The weather radar observation indicated that the rainband was maintained for 11h. The maximum length and width of the rainband observed in 1999 was ~200km and ~20km, respectively. The rainband observed in 2002 was not so developed compared with the case in 1999. The Froude number averaged from sea level to the top of the Koshikijima Islands (~600m) was large (>1), and the lifting condensation level was below the tops of the Koshikijima Islands. Thus, it is suggested that the clouds organizing the rainband are formed by the triggering of the mountains on the airflow passing over them. The vertical profile of horizontal wind in/around the rainband was investigated in the wind profiler observations. In the downdraft region 60km from the Koshikijima Islands, strong wind and its clockwise rotation with increasing height was observed below 3km altitude. In addition, a strong wind component perpendicular to the rainband was observed when the rainband was well developed. These wind behaviors were related to the evolution of the rainband

Contribution of common and rare variants to bipolar disorder susceptibility in extended pedigrees from population isolates.

Current evidence from case/control studies indicates that genetic risk for psychiatric disorders derives primarily from numerous common variants, each with a small phenotypic impact. The literature describing apparent segregation of bipolar disorder (BP) in numerous multigenerational pedigrees suggests that, in such families, large-effect inherited variants might play a greater role. To identify roles of rare and common variants on BP, we conducted genetic analyses in 26 Colombia and Costa Rica pedigrees ascertained for bipolar disorder 1 (BP1), the most severe and heritable form of BP. In these pedigrees, we performed microarray SNP genotyping of 838 individuals and high-coverage whole-genome sequencing of 449 individuals. We compared polygenic risk scores (PRS), estimated using the latest BP1 genome-wide association study (GWAS) summary statistics, between BP1 individuals and related controls. We also evaluated whether BP1 individuals had a higher burden of rare deleterious single-nucleotide variants (SNVs) and rare copy number variants (CNVs) in a set of genes related to BP1. We found that compared with unaffected relatives, BP1 individuals had higher PRS estimated from BP1 GWAS statistics (P = 0.001 ~ 0.007) and displayed modest increase in burdens of rare deleterious SNVs (P = 0.047) and rare CNVs (P = 0.002 ~ 0.033) in genes related to BP1. We did not observe rare variants segregating in the pedigrees. These results suggest that small-to-moderate effect rare and common variants are more likely to contribute to BP1 risk in these extended pedigrees than a few large-effect rare variants

Silencing of Vlaro2 for chorismate synthase revealed that the phytopathogen Verticillium longisporum induces the cross-pathway control in the xylem

The first leaky auxotrophic mutant for aromatic amino acids of the near-diploid fungal plant pathogen Verticillium longisporum (VL) has been generated. VL enters its host Brassica napus through the roots and colonizes the xylem vessels. The xylem contains little nutrients including low concentrations of amino acids. We isolated the gene Vlaro2 encoding chorismate synthase by complementation of the corresponding yeast mutant strain. Chorismate synthase produces the first branch point intermediate of aromatic amino acid biosynthesis. A novel RNA-mediated gene silencing method reduced gene expression of both isogenes by 80% and resulted in a bradytrophic mutant, which is a leaky auxotroph due to impaired expression of chorismate synthase. In contrast to the wild type, silencing resulted in increased expression of the cross-pathway regulatory gene VlcpcA (similar to cpcA/GCN4) during saprotrophic life. The mutant fungus is still able to infect the host plant B. napus and the model Arabidopsis thaliana with reduced efficiency. VlcpcA expression is increased in planta in the mutant and the wild-type fungus. We assume that xylem colonization requires induction of the cross-pathway control, presumably because the fungus has to overcome imbalanced amino acid supply in the xylem

Genetic contributions to circadian activity rhythm and sleep pattern phenotypes in pedigrees segregating for severe bipolar disorder

Abnormalities in sleep and circadian rhythms are central features of bipolar disorder (BP), often persisting between episodes. We report here, to our knowledge, the first systematic analysis of circadian rhythm activity in pedigrees segregating severe BP (BP-I). By analyzing actigraphy data obtained from members of 26 Costa Rican and Colombian pedigrees [136 euthymic (i.e., interepisode) BP-I individuals and 422 non-BP-I relatives], we delineated 73 phenotypes, of which 49 demonstrated significant heritability and 13 showed significant trait-like association with BP-I. All BP-I-associated traits related to activity level, with BP-I individuals consistently demonstrating lower activity levels than their non-BP-I relatives. We analyzed all 49 heritable phenotypes using genetic linkage analysis, with special emphasis on phenotypes judged to have the strongest impact on the biology underlying BP. We identified a locus for interdaily stability of activity, at a threshold exceeding genome-wide significance, on chromosome 12pter, a region that also showed pleiotropic linkage to two additional activity phenotypes.National Institute of Health/[R01MH075007]/NIH/Estados UnidosNational Institute of Health/[R01MH095454]/NIH/Estados UnidosNational Institute of Health/[P30NS062691]/NIH/Estados UnidosNational Institute of Health/[T32MH073526]/NIH/Estados UnidosNational Institute of Health/[K23MH074644-01]/NIH/Estados UnidosNational Institute of Health/[K08MH086786]/NIH/Estados UnidosUCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Básicas::Centro de Investigación en Biología Celular y Molecular (CIBCM

Characterization of Expression Quantitative Trait Loci in Pedigrees from Colombia and Costa Rica Ascertained for Bipolar Disorder

The observation that variants regulating gene expression (expression quantitative trait loci, eQTL) are at a high frequency among SNPs associated with complex traits has made the genome-wide characterization of gene expression an important tool in genetic mapping studies of such traits. As part of a study to identify genetic loci contributing to bipolar disorder and other quantitative traits in members of 26 pedigrees from Costa Rica and Colombia, we measured gene expression in lymphoblastoid cell lines derived from 786 pedigree members. The study design enabled us to comprehensively reconstruct the genetic regulatory network in these families, provide estimates of heritability, identify eQTL, evaluate missing heritability for the eQTL, and quantify the number of different alleles contributing to any given locus. In the eQTL analysis, we utilize a recently proposed hierarchical multiple testing strategy which controls error rates regarding the discovery of functional variants. Our results elucidate the heritability and regulation of gene expression in this unique Latin American study population and identify a set of regulatory SNPs which may be relevant in future investigations of complex disease in this population. Since our subjects belong to extended families, we are able to compare traditional kinship-based estimates with those from more recent methods that depend only on genotype information.National Institutes for Health/[R01 HG006695]/NIH/Estados UnidosNational Institutes for Health/[R01 MH101782]/NIH/Estados UnidosNational Institutes for Health/[R01 MH075007]/NIH/Estados UnidosIsrael Science Foundation/[1112/14]/ISF/IsraelUCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Básicas::Centro de Investigación en Biología Celular y Molecular (CIBCM