The complexity of dominating set reconfiguration

Suppose that we are given two dominating sets $D_s$ and $D_t$ of a graph $G$ whose cardinalities are at most a given threshold $k$. Then, we are asked whether there exists a sequence of dominating sets of $G$ between $D_s$ and $D_t$ such that each dominating set in the sequence is of cardinality at most $k$ and can be obtained from the previous one by either adding or deleting exactly one vertex. This problem is known to be PSPACE-complete in general. In this paper, we study the complexity of this decision problem from the viewpoint of graph classes. We first prove that the problem remains PSPACE-complete even for planar graphs, bounded bandwidth graphs, split graphs, and bipartite graphs. We then give a general scheme to construct linear-time algorithms and show that the problem can be solved in linear time for cographs, trees, and interval graphs. Furthermore, for these tractable cases, we can obtain a desired sequence such that the number of additions and deletions is bounded by $O(n)$, where $n$ is the number of vertices in the input graph

Token Jumping in minor-closed classes

Given two $k$-independent sets $I$ and $J$ of a graph $G$, one can ask if it is possible to transform the one into the other in such a way that, at any step, we replace one vertex of the current independent set by another while keeping the property of being independent. Deciding this problem, known as the Token Jumping (TJ) reconfiguration problem, is PSPACE-complete even on planar graphs. Ito et al. proved in 2014 that the problem is FPT parameterized by $k$ if the input graph is $K_{3,\ell}$-free. We prove that the result of Ito et al. can be extended to any $K_{\ell,\ell}$-free graphs. In other words, if $G$ is a $K_{\ell,\ell}$-free graph, then it is possible to decide in FPT-time if $I$ can be transformed into $J$. As a by product, the TJ-reconfiguration problem is FPT in many well-known classes of graphs such as any minor-free class

Fixed-Parameter Tractability of Token Jumping on Planar Graphs

Suppose that we are given two independent sets $I_0$ and $I_r$ of a graph such that $|I_0| = |I_r|$, and imagine that a token is placed on each vertex in $I_0$. The token jumping problem is to determine whether there exists a sequence of independent sets which transforms $I_0$ into $I_r$ so that each independent set in the sequence results from the previous one by moving exactly one token to another vertex. This problem is known to be PSPACE-complete even for planar graphs of maximum degree three, and W[1]-hard for general graphs when parameterized by the number of tokens. In this paper, we present a fixed-parameter algorithm for the token jumping problem on planar graphs, where the parameter is only the number of tokens. Furthermore, the algorithm can be modified so that it finds a shortest sequence for a yes-instance. The same scheme of the algorithms can be applied to a wider class of graphs, $K_{3,t}$-free graphs for any fixed integer $t \ge 3$, and it yields fixed-parameter algorithms

10-kV SiC MOSFET Power Module With Reduced Common-Mode Noise and Electric Field

The advancement of silicon carbide (SiC) power devices with voltage ratings exceeding 10 kV is expected to revolutionize medium- and high-voltage systems. However, present power module packages are limiting the performance of these unique switches. The objective of this research is to push the boundaries of high-density, high-speed, 10-kV power module packaging. The proposed package addresses the well-known electromagnetic and thermal challenges, as well as the prominent electrostatic and electromagnetic interference (EMI) issues associated with high-speed, 10-kV devices. The high-speed switching and high voltage rating of these devices causes significant EMI and high electric fields. Existing power module packages are unable to address these challenges, resulting in detrimental EMI and partial discharge that limit the converter operation. This article presents the design and testing of a 10-kV SiC mosfet power module that switches at a record 250 V/ns without compromising the signal and ground integrity due to an integrated screen reduces the common-mode current by ten times. This screen connection simultaneously increases the partial discharge inception voltage by more than 50%. With the integrated cooling system, the power module prototype achieves a power density of 4 W/mm 3

A reconfigurations analogue of Brooks’ theorem.

Let G be a simple undirected graph on n vertices with maximum degree Δ. Brooks’ Theorem states that G has a Δ-colouring unless G is a complete graph, or a cycle with an odd number of vertices. To recolour G is to obtain a new proper colouring by changing the colour of one vertex. We show that from a k-colouring, k > Δ, a Δ-colouring of G can be obtained by a sequence of O(n 2) recolourings using only the original k colours unless G is a complete graph or a cycle with an odd number of vertices, or k = Δ + 1, G is Δ-regular and, for each vertex v in G, no two neighbours of v are coloured alike. We use this result to study the reconfiguration graph R k (G) of the k-colourings of G. The vertex set of R k (G) is the set of all possible k-colourings of G and two colourings are adjacent if they differ on exactly one vertex. It is known that if k ≤ Δ(G), then R k (G) might not be connected and it is possible that its connected components have superpolynomial diameter, if k ≥ Δ(G) + 2, then R k (G) is connected and has diameter O(n 2). We complete this structural classification by settling the missing case: if k = Δ(G) + 1, then R k (G) consists of isolated vertices and at most one further component which has diameter O(n 2). We also describe completely the computational complexity classification of the problem of deciding whether two k-colourings of a graph G of maximum degree Δ belong to the same component of R k (G) by settling the case k = Δ(G) + 1. The problem is O(n 2) time solvable for k = 3, PSPACE-complete for 4 ≤ k ≤ Δ(G), O(n) time solvable for k = Δ(G) + 1, O(1) time solvable for k ≥ Δ(G) + 2 (the answer is always yes)

On the Parameterized Complexity of Simultaneous Deletion Problems

For a family of graphs F, an n-vertex graph G, and a positive integer k, the F-Deletion problem asks whether we can delete at most k vertices from G to obtain a graph in F. F-Deletion generalizes many classical graph problems such as Vertex Cover, Feedback Vertex Set, and Odd Cycle Transversal. A (multi) graph G = (V, cup_{i=1}^{alpha} E_{i}), where the edge set of G is partitioned into alpha color classes, is called an alpha-edge-colored graph. A natural extension of the F-Deletion problem to edge-colored graphs is the Simultaneous (F_1, ldots, F_alpha)-Deletion problem. In the latter problem, we are given an alpha-edge-colored graph G and the goal is to find a set S of at most k vertices such that each graph G_i - S, where G_i = (V, E_i) and 1 leq i leq alpha, is in F_i. Recently, a subset of the authors considered the aforementioned problem with F_1 = ldots = F_alpha being the family of all forests. They showed that the problem is fixed-parameter tractable when parameterized by k and alpha, and can be solved in O(2^{O(alpha k)}n^{O(1)}) time. In this work, we initiate the investigation of the complexity of Simultaneous (F_1, ldots, F_alpha)-Deletion with different families of graphs. In the process, we obtain a complete characterization of the parameterized complexity of this problem when one or more of the F_i\u27s is the class of bipartite graphs and the rest (if any) are forests. We show that if F_1 is the family of all bipartite graphs and each of F_2 = F_3 = ldots = F_alpha is the family of all forests then the problem is fixed-parameter tractable parameterized by k and alpha. However, even when F_1 and F_2 are both the family of all bipartite graphs, then the Simultaneous (F_1, F_2)-Deletion} problem itself is already W[1]-hard

Reconfiguring Independent Sets in Claw-Free Graphs

We present a polynomial-time algorithm that, given two independent sets in a claw-free graph $G$, decides whether one can be transformed into the other by a sequence of elementary steps. Each elementary step is to remove a vertex $v$ from the current independent set $S$ and to add a new vertex $w$ (not in $S$) such that the result is again an independent set. We also consider the more restricted model where $v$ and $w$ have to be adjacent

Reconfiguration of Dominating Sets

We explore a reconfiguration version of the dominating set problem, where a dominating set in a graph $G$ is a set $S$ of vertices such that each vertex is either in $S$ or has a neighbour in $S$. In a reconfiguration problem, the goal is to determine whether there exists a sequence of feasible solutions connecting given feasible solutions $s$ and $t$ such that each pair of consecutive solutions is adjacent according to a specified adjacency relation. Two dominating sets are adjacent if one can be formed from the other by the addition or deletion of a single vertex. For various values of $k$, we consider properties of $D_k(G)$, the graph consisting of a vertex for each dominating set of size at most $k$ and edges specified by the adjacency relation. Addressing an open question posed by Haas and Seyffarth, we demonstrate that $D_{\Gamma(G)+1}(G)$ is not necessarily connected, for $\Gamma(G)$ the maximum cardinality of a minimal dominating set in $G$. The result holds even when graphs are constrained to be planar, of bounded tree-width, or $b$-partite for $b \ge 3$. Moreover, we construct an infinite family of graphs such that $D_{\gamma(G)+1}(G)$ has exponential diameter, for $\gamma(G)$ the minimum size of a dominating set. On the positive side, we show that $D_{n-m}(G)$ is connected and of linear diameter for any graph $G$ on $n$ vertices having at least $m+1$ independent edges.Comment: 12 pages, 4 figure

Reconfiguration on sparse graphs

A vertex-subset graph problem Q defines which subsets of the vertices of an input graph are feasible solutions. A reconfiguration variant of a vertex-subset problem asks, given two feasible solutions S and T of size k, whether it is possible to transform S into T by a sequence of vertex additions and deletions such that each intermediate set is also a feasible solution of size bounded by k. We study reconfiguration variants of two classical vertex-subset problems, namely Independent Set and Dominating Set. We denote the former by ISR and the latter by DSR. Both ISR and DSR are PSPACE-complete on graphs of bounded bandwidth and W[1]-hard parameterized by k on general graphs. We show that ISR is fixed-parameter tractable parameterized by k when the input graph is of bounded degeneracy or nowhere-dense. As a corollary, we answer positively an open question concerning the parameterized complexity of the problem on graphs of bounded treewidth. Moreover, our techniques generalize recent results showing that ISR is fixed-parameter tractable on planar graphs and graphs of bounded degree. For DSR, we show the problem fixed-parameter tractable parameterized by k when the input graph does not contain large bicliques, a class of graphs which includes graphs of bounded degeneracy and nowhere-dense graphs

Role of the Subunits Interactions in the Conformational Transitions in Adult Human Hemoglobin: an Explicit Solvent Molecular Dynamics Study

Hemoglobin exhibits allosteric structural changes upon ligand binding due to the dynamic interactions between the ligand binding sites, the amino acids residues and some other solutes present under physiological conditions. In the present study, the dynamical and quaternary structural changes occurring in two unligated (deoxy-) T structures, and two fully ligated (oxy-) R, R2 structures of adult human hemoglobin were investigated with molecular dynamics. It is shown that, in the sub-microsecond time scale, there is no marked difference in the global dynamics of the amino acids residues in both the oxy- and the deoxy- forms of the individual structures. In addition, the R, R2 are relatively stable and do not present quaternary conformational changes within the time scale of our simulations while the T structure is dynamically more flexible and exhibited the T\rightarrow R quaternary conformational transition, which is propagated by the relative rotation of the residues at the {\alpha}1{\beta}2 and {\alpha}2{\beta}1 interface.Comment: Reprinted (adapted) with permission from J. Phys. Chem. B DOI:10.1021/jp3022908. Copyright (2012) American Chemical Societ