Culture Flock

Details of the research, planning, and execution behind the exhibit Culture Flock which opened in the University Museum on April 2nd, 2013, and ran through May 10th, 2013. Final text panels and images of the exhibit in progress are included

Planktonic desmids of three Amazonian systems (Lake Batata, Lake Mussurá and Trombetas River), Pará, Brazil

Forty-eight taxa of planktonic desmids were recorded in 319 samples taken during one year from Lakes Batata and Mussurá and Trombetas River, State of Pará, Brazil. Thirty-eight of these are described and 33 illustrated. Staurodesmus, Staurastrum and Cosmarium were represented by more species than were other genera. The importance of desmids in Amazonian waters, previously documented in literature, is confirmed by the present study

Downstream transport processes modulate the effects of environmental heterogeneity on riverine phytoplankton

Environmental heterogeneity (EH) in space and time promotes niche-partition, which leads to high variation in biological communities, such as in algae. In streams, EH is highly related to the intensity of the water flow and may lead to community variation mainly during the low flow conditions. Despite the wide knowledge on the responses of phytoplankton communities to EH in lentic and semi-lentic systems, studies of riverine phytoplankton community variation are still scarce. Here, we first investigated the relationship between phytoplankton community variation and EH in different courses of the river and between seasons. We expected that under low or intermediate flow conditions, there is a positive correlation between community variation and EH. Alternatively, we did not expect any relationship between EH and community variation under high flow condition because stronger downstream transport would mask environmental filtering. We sampled nine sites monthly (May 2012 to April 2013) in a tropical river of Brazilian Southeast. We calculated EH from abiotic data whereas for community variation, here community distinctiveness (CD), we used Sorensen (CDSor) and Bray-Curtis (CDBray) dissimilarities. Differences in EH, CDSor and CDBray were tested at between-season and among-course levels. We found lower distinctiveness during the dry season when EH was the highest. Contrastingly, phytoplankton CD was the highest even when EH was low during the wet season. We found that this pattern raised from the increasing in individuals dispersal during the wet season, promoting mass effects. Finally, our results thus reject the first hypothesis and show a negative relationship between EH and distinctiveness. However, results support our alternative hypothesis and show that during the wet season, distinctiveness is not driven by EH. These results provide new insights into how EH drives community variation, being useful for both basic research about riverine algal communities and biomonitoring programs using phytoplankton communities as bioindicators. (C). 2019 Elsevier B.V. All rights reserved.Peer reviewe

An introductory overview of open-source and commercial software options for the analysis of forensic sequencing data

The top challenges of adopting new methods to forensic DNA analysis in routine laboratories are often the capital investment and the expertise required to implement and validate such methods locally. In the case of next-generation sequencing, in the last decade, several specifically forensic commercial options became available, offering reliable and validated solutions. Despite this, the readily available expertise to analyze, interpret and understand such data is still perceived to be lagging behind. This review gives an introductory overview for the forensic scientists who are at the beginning of their journey with implementing next-generation sequencing locally and because most in the field do not have a bioinformatics background may find it difficult to navigate the new terms and analysis options available. The currently available open-source and commercial software for forensic sequencing data analysis are summarized here to provide an accessible starting point for those fairly new to the forensic application of massively parallel sequencing

Electromechanical Behavior of Al/Al2_{2}O3_{3} Multilayers on Flexible Substrates: Insights from In Situ Film Stress and Resistance Measurements

A series of Al and Al/Al$_{2}$O$_{3}$ thin-film multilayer structures on flexible polymer substrates are fabricated with a unique deposition chamber combining magnetron sputtering (Al) and atomic layer deposition (ALD, Al$_{2}$O$_{3}$, nominal thickness 2.4–9.4 nm) without breaking vacuum and thoroughly characterized using transmission electron microscopy (TEM). The electromechanical behavior of the multilayers and Al reference films is investigated in tension with in situ X-ray diffraction (XRD) and four-point probe resistance measurements. All films exhibit excellent interfacial adhesion, with no delamination in the investigated strain range (12%). For the first time, an adhesion-promoting naturally forming amorphous interlayer is confirmed for thin films sputter deposited onto polymers under laboratory conditions. The evolution of Al film stresses and electrical resistance reveal changes in the deformation behavior as a function of oxide thickness. Strengthening of Al is observed with increasing oxide thickness. Significant embrittlement can be avoided for oxide layer thicknesses ≤2.4 nm

Responses of Functional and Taxonomic Phytoplankton Diversity to Environmental Gradients in Subtropical and Tropical Reservoirs

Understanding the influence of environmental conditions on biodiversity is a major task in ecology. We investigated how phytoplankton taxonomic (TD) and functional (FD) diversities vary with environmental factors in eight subtropical and tropical reservoirs. We hypothesized that i) environmental variables affect phytoplankton TD and FD; ii) FD provides better relationships to environmental changes than TD, and; iii) indices based on biomass are better related to the environment than those based on identities. The relationships between phytoplankton diversities and environmental drivers were assessed through generalized linear models. Our hypotheses were partly confirmed. TD and FD were, in fact, dependent on the environment, with higher values occurring in warmer, clearer, and more enriched systems, under lower zooplankton grazing pressure; but FD based on identities was not predicted better from environmental conditions than TD based on identities. As expected, indices based on biomass are better related to the environment than their counterpart based on identities

Impact of urban canopy meteorological forcing on aerosol concentrations

The regional climate model RegCM4 extended with the land surface model CLM4.5 was coupled to the chemistry transport model CAMx to analyze the impact of urban meteorological forcing on surface fine aerosol (PM2.5) concentrations for summer conditions over the 2001–2005 period, focusing on the area of Europe. Starting with the analysis of the meteorological modifications caused by urban canopy forcing, we found a significant increase in urban surface temperatures (up to 2–3&thinsp;K), a decrease of specific humidity (by up to 0.4–0.6&thinsp;gkg−1), a reduction of wind speed (up to −1&thinsp;ms−1) and an enhancement of vertical turbulent diffusion coefficient (up to 60–70&thinsp;m2s−1).These modifications translated into significant changes in surface aerosol concentrations that were calculated by a cascading experimental approach. First, none of the urban meteorological effects were considered. Then, the temperature effect was added, then the humidity and the wind, and finally, the enhanced turbulence was considered in the chemical runs. This facilitated the understanding of the underlying processes acting to modify urban aerosol concentrations. Moreover, we looked at the impact of the individual aerosol components as well. The urbanization-induced temperature changes resulted in a decrease of PM2.5 by −1.5 to −2&thinsp;µg m−3, while decreased urban winds resulted in increases by 1–2&thinsp;µg m−3. The enhanced turbulence over urban areas resulted in decreases of PM2.5 by −2&thinsp;µg m−3. The combined effect of all individual impact depends on the competition between the partial impacts and can reach up to −3&thinsp;µg m−3 for some cities, especially when the temperature impact was stronger in magnitude than the wind impact. The effect of changed humidity was found to be minor. The main contributor to the temperature impact is the modification of secondary inorganic aerosols, mainly nitrates, while the wind and turbulence impact is most pronounced in the case of primary aerosol (primary black and organic carbon and other fine particle matter). The overall as well as individual impacts on secondary organic aerosol are very small, with the increased turbulence acting as the main driver. The analysis of the vertical extent of the aerosol changes showed that the perturbations caused by urban canopy forcing, besides being large near the surface, have a secondary maximum for turbulence and wind impact over higher model levels, which is attributed to the vertical extent of the changes in turbulence over urban areas. The validation of model data with measurements showed good agreement, and we could detect a clear model improvement in some areas when including the urban canopy meteorological effects in our chemistry simulations.</p

The success of the cyanobacterium Cylindrospermopsis raciborskii in freshwaters is enhanced by the combined effects of light intensity and temperature

Toxic cyanobacterial blooms in freshwaters are thought to be a consequence of the combined effects of anthropogenic eutrophication and climate change. It is expected that climate change will affect water mixing regimes that alter the water transparency and ultimately the light environment for phytoplankton. Blooms of the potentially toxic cyanobacterium Cylindrospermopsis raciborskii are expanding from tropical towards temperate regions. Several hypotheses have been proposed to explain this expansion, including an increase in water temperature due to climate change and the high phenotypic plasticity of the species that allows it to exploit different light environments. We performed an analysis based on eight lakes in tropical, subtropical and temperate regions to examine the distribution and abundance of C. raciborskii in relation to water temperature and transparency. We then conducted a series of short-term factorial experiments that combined three temperatures and two light intensity levels using C. raciborskii cultures alone and in interaction with another cyanobacterium to identify its growth capacity. Our results from the field, in contrast to predictions, showed no differences in dominance (>40% to the total biovolume) of C. raciborskii between climate regions. C. raciborskii was able to dominate the phytoplankton in a wide range of light environments (euphotic zone=1.5 to 5 m, euphotic zone/mixing zone ratio 1.5). Moreover, C. raciborskii was capable of dominating the phytoplankton at low temperatures (<15°C). Our experimental results showed that C. raciborskii growing in interaction was enhanced by the increase of the temperature and light intensity. C. raciborskii growth in high light intensities and at a wide range of temperatures, suggests that any advantage that this species may derive from climate change that favors its dominance in the phytoplankton is likely due to changes in the light environment rather than changes in temperature. Predictive models that consider only temperature as a drive factor can therefore fail in predicting the expansion of this potentially toxic cyanobacterium