Antispiral waves are sources in oscillatory reaction-diffusion media

Spiral and antispiral waves are studied numerically in two examples of oscillatory reaction-diffusion media and analytically in the corresponding complex Ginzburg-Landau equation (CGLE). We argue that both these structures are sources of waves in oscillatory media, which are distinguished only by the sign of the phase velocity of the emitted waves. Using known analytical results in the CGLE, we obtain a criterion for the CGLE coefficients that predicts whether antispirals or spirals will occur in the corresponding reaction-diffusion systems. We apply this criterion to the FitzHugh-Nagumo and Brusselator models by deriving the CGLE near the Hopf bifurcations of the respective equations. Numerical simulations of the full reaction-diffusion equations confirm the validity of our simple criterion near the onset of oscillations. They also reveal that antispirals often occur near the onset and turn into spirals further away from it. The transition from antispirals to spirals is characterized by a divergence in the wavelength. A tentative interpretaion of recent experimental observations of antispiral waves in the Belousov-Zhabotinsky reaction in a microemulsion is given.Comment: 10 pages, 8 figures, submitted to J. Phys. Chem. B on Feb. 20, 2004. A short account of the spiral-antispiral criterion has been given in PRL (see http://link.aps.org/abstract/PRL/v92/e089801

Doppler Effect of Nonlinear Waves and Superspirals in Oscillatory Media

Nonlinear waves emitted from a moving source are studied. A meandering spiral in a reaction-diffusion medium provides an example, where waves originate from a source exhibiting a back-and-forth movement in radial direction. The periodic motion of the source induces a Doppler effect that causes a modulation in wavelength and amplitude of the waves (``superspiral''). Using the complex Ginzburg-Landau equation, we show that waves subject to a convective Eckhaus instability can exhibit monotonous growth or decay as well as saturation of these modulations away from the source depending on the perturbation frequency. Our findings allow a consistent interpretation of recent experimental observations concerning superspirals and their decay to spatio-temporal chaos.Comment: 4 pages, 4 figure

Convective and absolute Eckhaus instability leading to modulated waves in a finite box

We report experimental study of the secondary modulational instability of a one-dimensional non-linear traveling wave in a long bounded channel. Two qualitatively different instability regimes involving fronts of spatio-temporal defects are linked to the convective and absolute nature of the instability. Both transitions appear to be subcritical. The spatio-temporal defects control the global mode structure.Comment: 5 pages, 7 figures (ReVTeX 4 and amsmath.sty), final versio

Model evaluation for glycolytic oscillations in yeast biotransformations of xenobiotics

Anaerobic glycolysis in yeast perturbed by the reduction of xenobiotic ketones is studied numerically in two models which possess the same topology but different levels of complexity. By comparing both models' predictions for concentrations and fluxes as well as steady or oscillatory temporal behavior we answer the question what phenomena require what kind of minimum model abstraction. While mean concentrations and fluxes are predicted in agreement by both models we observe different domains of oscillatory behavior in parameter space. Generic properties of the glycolytic response to ketones are discussed

Quantification of Nematic Cell Polarity in Three-dimensional Tissues

How epithelial cells coordinate their polarity to form functional tissues is an open question in cell biology. Here, we characterize a unique type of polarity found in liver tissue, nematic cell polarity, which is different from vectorial cell polarity in simple, sheet-like epithelia. We propose a conceptual and algorithmic framework to characterize complex patterns of polarity proteins on the surface of a cell in terms of a multipole expansion. To rigorously quantify previously observed tissue-level patterns of nematic cell polarity (Morales-Navarette et al., eLife 8:e44860, 2019), we introduce the concept of co-orientational order parameters, which generalize the known biaxial order parameters of the theory of liquid crystals. Applying these concepts to three-dimensional reconstructions of single cells from high-resolution imaging data of mouse liver tissue, we show that the axes of nematic cell polarity of hepatocytes exhibit local coordination and are aligned with the biaxially anisotropic sinusoidal network for blood transport. Our study characterizes liver tissue as a biological example of a biaxial liquid crystal. The general methodology developed here could be applied to other tissues or in-vitro organoids.Comment: 27 pages, 9 color figure

Flat Spacetime Vacuum in Loop Quantum Gravity

We construct a state in the loop quantum gravity theory with zero cosmological constant, which should correspond to the flat spacetime vacuum solution. This is done by defining the loop transform coefficients of a flat connection wavefunction in the holomorphic representation which satisfies all the constraints of quantum General Relativity and it is peaked around the flat space triads. The loop transform coefficients are defined as spin foam state sum invariants of the spin networks embedded in the spatial manifold for the SU(2) quantum group. We also obtain an expression for the vacuum wavefunction in the triad represntation, by defining the corresponding spin networks functional integrals as SU(2) quantum group state sums.Comment: 20 pages, 6 figure

Mutual Zonated Interactions of Wnt and Hh Signaling Are Orchestrating the Metabolism of the Adult Liver in Mice and Human

The Hedgehog (Hh) and Wnt/β-Catenin (Wnt) cascades are morphogen pathways whose pronounced influence on adult liver metabolism has been identified in recent years. How both pathways communicate and control liver metabolic functions are largely unknown. Detecting core components of Wnt and Hh signaling and mathematical modeling showed that both pathways in healthy liver act largely complementary to each other in the pericentral (Wnt) and the periportal zone (Hh) and communicate mainly by mutual repression. The Wnt/Hh module inversely controls the spatiotemporal operation of various liver metabolic pathways, as revealed by transcriptome, proteome, and metabolome analyses. Shifting the balance to Wnt (activation) or Hh (inhibition) causes pericentralization and periportalization of liver functions, respectively. Thus, homeostasis of the Wnt/Hh module is essential for maintaining proper liver metabolism and to avoid the development of certain metabolic diseases. With caution due to minor species-specific differences, these conclusions may hold for human liver as well

Accelerated cell divisions drive the outgrowth of the regenerating spinal cord in axolotls

Axolotls are unique in their ability to regenerate the spinal cord. However, the mechanisms that underlie this phenomenon remain poorly understood. Previously, we showed that regenerating stem cells in the axolotl spinal cord revert to a molecular state resembling embryonic neuroepithelial cells and functionally acquire rapid proliferative divisions (Rodrigo Albors et al., 2015). Here, we refine the analysis of cell proliferation in space and time and identify a high- proliferation zone in the regenerating spinal cord that shifts posteriorly over time. By tracking sparsely-labeled cells, we also quantify cell influx into the regenerate. Taking a mathematical modeling approach, we integrate these quantitative datasets of cell proliferation, neural stem cell activation and cell influx, to predict regenerative tissue outgrowth. Our model shows that while cell influx and neural stem cell activation play a minor role, the acceleration of the cell cycle is the major driver of regenerative spinal cord outgrowth in axolotls.Facultad de Ciencias ExactasInstituto de Física de Líquidos y Sistemas Biológico

Forecasting the SST space-time variability of the Alboran Sea with genetic algorithms

We propose a nonlinear ocean forecasting technique based on a combination of genetic algorithms and empirical orthogonal function (EOF) analysis. The method is used to forecast the space-time variability of the sea surface temperature (SST) in the Alboran Sea. The genetic algorithm finds the equations that best describe the behaviour of the different temporal amplitude functions in the EOF decomposition and, therefore, enables global forecasting of the future time-variability.Comment: 15 pages, 3 figures; latex compiled with agums.st

SPIRAL INSTABILITIES IN PERIODICALLY FORCED EXTENDED OSCILLATORY MEDIA

We investigate two instabilities of spiral waves in oscillatory media subject to different types of forcing using the complex Ginzburg-Landau equation. First, the transition of spiral waves via so-called superspirals to spatio-temporal chaos is related to a coexistence of the Eckhaus instability of the wave field and the intrinsic oscillatory meandering instability of the spiral core. Second, resonantly forced oscillatory media are shown to possess a novel scenario of spiral breakup. Bifurcation analysis and linear stability analysis yield explanations for the phenomenology observed by direct simulations