Surface mixing and biological activity in the four Eastern Boundary Upwelling Systems

Eastern Boundary Upwelling Systems (EBUS) are characterized by a high productivity of plankton associated with large commercial fisheries, thus playing key biological and socio-economical roles. The aim of this work is to make a comparative study of these four upwelling systems focussing on their surface stirring, using the Finite Size Lyapunov Exponents (FSLEs), and their biological activity, based on satellite data. First, the spatial distribution of horizontal mixing is analysed from time averages and from probability density functions of FSLEs. Then we studied the temporal variability of surface stirring focussing on the annual and seasonal cycle. There is a global negative correlation between surface horizontal mixing and chlorophyll standing stocks over the four areas. To try to better understand this inverse relationship, we consider the vertical dimension by looking at the Ekman-transport and vertical velocities. We suggest the possibility of a changing response of the phytoplankton to sub/mesoscale turbulence, from a negative effect in the very productive coastal areas to a positive one in the open ocean.Comment: 12 pages. NPG Special Issue on "Nonlinear processes in oceanic and atmospheric flows". Open Access paper, available also at the publisher site: http://www.nonlin-processes-geophys.net/16/557/2009

Characterisation of Agricultural and Agro-Industrial Residues as Raw Materials for Ethanol Production

Sugarcane bagasse, rice hulls, peanut shells, and cassava stalks are abundant lignocellulosic residues that could be considered as raw materials for ethanol production in tropical countries. The knowledge on the composition of lignocellulosic materials is important for their effective utilisation. In this work, a systematic comparison of the chemical composition of sugarcane bagasse, peanut shells and two sorts of rice hulls and cassava stalks, was performed using analytical acid hydrolysis and HPLC analysis. The highest carbohydrate fraction, w = 641 g kg/kg of the dry matter was detected in bagasse, which also contained the highest amount of xylan (w = 221 g /kg). Rice hulls obtained from an artisan mill had the highest glucan fraction, w = 4 97 g /kg, whereas peanut shells displayed the highest lignin fraction (w = 365 g /kg). The highest ethanol potential, around 163 L /t, was estimated for rice hulls and bagasse. However, the potential of bagasse would be higher than that of rice hulls if conversion of xylan fraction to ethanol would be considered

Particle Swarm Optimization Algorithm with a Bio-Inspired Aging Model

A Particle Swarm Optimization with a Bio-inspired Aging Model (BAM-PSO) algorithm is proposed to alleviate the premature convergence problem of other PSO algorithms. Each particle within the swarm is subjected to aging based on the age-related changes observed in immune system cells. The proposed algorithm is tested with several popular and well-established benchmark functions and its performance is compared to other evolutionary algorithms in both low and high dimensional scenarios. Simulation results reveal that at the cost of computational time, the proposed algorithm has the potential to solve the premature convergence problem that affects PSO-based algorithms; showing good results for both low and high dimensional problems. This work suggests that aging mechanisms do have further implications in computational intelligence

Fast pseudo-CT synthesis from MRI T1-weighted images using a patch-based approach

MRI-based bone segmentation is a challenging task because bone tissue and air both present low signal intensity on MR images, making it difficult to accurately delimit the bone boundaries. However, estimating bone from MRI images may allow decreasing patient ionization by removing the need of patient-specific CT acquisition in several applications. In this work, we propose a fast GPU-based pseudo-CT generation from a patient-specific MRI T1-weighted image using a group-wise patch-based approach and a limited MRI and CT atlas dictionary. For every voxel in the input MR image, we compute the similarity of the patch containing that voxel with the patches of all MR images in the database, which lie in a certain anatomical neighborhood. The pseudo-CT is obtained as a local weighted linear combination of the CT values of the corresponding patches. The algorithm was implemented in a GPU. The use of patch-based techniques allows a fast and accurate estimation of the pseudo-CT from MR T1-weighted images, with a similar accuracy as the patient-specific CT. The experimental normalized cross correlation reaches 0.9324±0.0048 for an atlas with 10 datasets. The high NCC values indicate how our method can accurately approximate the patient-specific CT. The GPU implementation led to a substantial decrease in computational time making the approach suitable for real applications

A Mathematical Model to Optimize the Neoadjuvant Chemotherapy Treatment Sequence for Triple-Negative Locally Advanced Breast Cancer

Background: Triple-negative locally advanced breast cancer is an aggressive tumor type. Currently, the standard sequence treatment is applied, administering anthracyclines first and then a taxane plus platinum. Clinical studies for all possible treatment combinations are not practical or affordable, but mathematical modeling of the active mitotic cell population is possible. Our study aims to show the regions with the tumor’s most substantial cellular population variation by utilizing all possible values of the parameters () that define the annihilatory drug capacity according to the proposed treatment. Method: A piecewise linear mathematical model was used to analyze the cell population growth by applying four treatments: standard sequences of 21 days (SS21) and 14 days (SS14), administering anthracyclines first, followed by a taxane plus platinum, and inverted sequences of 21 days (IS21) and 14 days (IS14), administering a taxane plus platinum first then anthracyclines. Results: The simulation showed a higher effect of IS14 over SS14 when the rate of drug resistance was larger in the cell population during DNA synthesis (G1 and S) compared to cells in mitosis (G2 and M). However, if the proportion of resistant cells in both populations was equivalent, then treatments did not differ. Conclusions: When resistance is considerable, IS14 is more efficient than SS14, reducing the tumor population to a minimum

First insights into the genetic diversity of Mycobacterium tuberculosis isolates from HIV-infected Mexican patients and mutations causing multidrug resistance

<p>Abstract</p> <p>Background</p> <p>The prevalence of infections with <it>Mycobacterium tuberculosis </it>(MTb) and nontuberculous mycobacteria (NTM) species in HIV-infected patients in Mexico is unknown. The aims of this study were to determine the frequency of MTb and NTM species in HIV-infected patients from Mexico City, to evaluate the genotypic diversity of the <it>Mycobacterium tuberculosis </it>complex strains, to determine their drug resistance profiles by colorimetric microplate Alamar Blue assay (MABA), and finally, to detect mutations present in <it>kat</it>G, <it>rpo</it>B and <it>inh</it>A genes, resulting in isoniazid (INH) and rifampin (RIF) resistance.</p> <p>Results</p> <p>Of the 67 mycobacterial strains isolated, 48 were identified as MTb, 9 as <it>M. bovis</it>, 9 as <it>M. avium </it>and 1 as <it>M. intracellulare</it>. IS<it>6110</it>-RFLP of 48 MTb strains showed 27 profiles. Spoligotyping of the 48 MTb strains yielded 21 patterns, and 9 <it>M. bovis </it>strains produced 7 patterns. Eleven new spoligotypes patterns were found. A total of 40 patterns were produced from the 48 MTb strains when MIRU-VNTR was performed. Nineteen (39.6%) MTb strains were resistant to one or more drugs. One (2.1%) multidrug-resistant (MDR) strain was identified. A novel mutation was identified in a RIF-resistant strain, GAG → TCG (Glu → Ser) at codon 469 of <it>rpo</it>B gene.</p> <p>Conclusions</p> <p>This is the first molecular analysis of mycobacteria isolated from HIV-infected patients in Mexico, which describe the prevalence of different mycobacterial species in this population. A high genetic diversity of MTb strains was identified. New spoligotypes and MIRU-VNTR patterns as well as a novel mutation associated to RIF-resistance were found. This information will facilitate the tracking of different mycobacterial species in HIV-infected individuals, and monitoring the spread of these microorganisms, leading to more appropriate measures for tuberculosis control.</p

Recurring adaptive introgression of a supergene variant that determines social organization

Introgression has been proposed as an essential source of adaptive genetic variation. However, a key barrier to adaptive introgression is that recombination can break down combinations of alleles that underpin many traits. This barrier might be overcome in supergene regions, where suppressed recombination leads to joint inheritance across many loci. Here, we study the evolution of a large supergene region that determines a major social and ecological trait in Solenopsis fire ants: whether colonies have one queen or multiple queens. Using coalescent-based phylogenies built from the genomes of 365 haploid fire ant males, we show that the supergene variant responsible for multiple-queen colonies evolved in one species and repeatedly spread to other species through introgressive hybridization. This finding highlights how supergene architecture can enable a complex adaptive phenotype to recurrently permeate species boundaries

Influence of Sparger Type and Regime of Fluid on Biomass and Lipid Productivity of Chlorella vulgaris Culture in a Pilot Airlift Photobioreactor

The effect of different types of spargers and the influence of the air flow rate on biomass and lipids production by Chlorella vulgaris was evaluated. These data allowed correlation of the hydrodynamic behavior of the photobioreactor with the byproducts production. The hydrodynamic characterization was developed by determining the mixing time (tM), hold-up, and total volumetric mass transfer coefficient of CO2, kLa(CO2)T, at increasing air flow rates for three different spargers: star-shaped, cross-shaped and porous glass surface sparger. The hydrodynamic characterization showed that the tM decreased, while the hold-up values and the kLa(CO2)T increased as a result of the increment in the volumetric air flow rate between 5 to 17 L min–1. The highest biomass and lipid concentrations were determined at the higher aeration rate (20 L min–1), which was correlated with the lower tM, the higher hold-up and kLa(CO2)T values. Biomass and lipid production showed an inverse correlation. The highest biomass concentration (750 mg L–1) and the lowest lipid concentration (10 mg L–1) were measured with the star sparger. In contrast, when the lowest biomass concentration was obtained (240 mg L–1), the highest lipid concentration of 196 mg L–1 was measured with the glass sparger. The maximum biomass productivity values were determined at the lower aeration rate and the star sparger, with the minimum power per unit of volume, which could be useful for a cost-effective process

Colombian essential oil of ruta graveolens against nosocomial antifungal resistant candida strains

Drug resistance in antifungal therapy, a problem unknown until a few years ago, is increasingly assuming importance especially in immunosuppressed patients and patients receiving chemotherapy and radiotherapy. In the past years, the use of essential oils as an approach to improve the effectiveness of antifungal agents and to reduce antifungal resistance levels has been proposed. Our research aimed to evaluate the antifungal activity of Colombian rue, Ruta graveolens, essential oil (REO) against clinical strains of Candida albicans, Candida parapsilopsis, Candida glabrata, and Candida tropicalis. Data obtained showed that C. tropicalis and C. albicans were the most sensitive strains showing minimum inhibitory concentrations (MIC) of 4.1 and 8.2 µg/mL of REO. Time–kill kinetics assay demonstrated that REO showed a fungicidal effect against C. tropicalis and a fungistatic effect against C. albicans. In addition, an amount of 40% of the biofilm formed by C. albicans was eradicated using 8.2 µg/mL of REO after 1 h of exposure. The synergistic effect of REO together with some antifungal compounds was also investigated. Fractional inhibitory concentration index (FICI) showed synergic effects of REO combined with amphotericin B. REO Lead a disruption in the cellular membrane integrity, consequently resulting in increased intracellular leakage of the macromolecules, thus confirming that the plasma membrane is a target of the mode of action of REO against C. albicans and C. tropicalis