Proceedings of the Crawfish and Catfish Aquaculture Conference : July 28, 1984, Charleston, South Carolina

In July, 1984, a seminar on the Crawfish and Catfish Aquaculture was convened at Charleston, South Carolina. The main objectives of this seminar were to improve knowledge of crawfish and catfish growers in production and marketing management and to share knowledge of fish farming with prospective aquaculturists

The effects of degassing on magmatic gas waves and long period eruptive precursors at silicic volcanoes

Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Solid Earth 125 (10), (2020): e2020JB019755, https://doi.org/10.1029/2020JB019755Cyclical ground deformation, associated seismicity, and elevated degassing are important precursors to explosive eruptions at silicic volcanoes. Regular intervals for elevated activity (6–30 hr) have been observed at volcanoes such as Mount Pinatubo in the Philippines and Soufrière Hills in Montserrat. Here, we explore a hypothesis originally proposed by Michaut et al. (2013, https://doi.org/10.1038/ngeo1928) where porosity waves containing magmatic gas are responsible for the observed periodic behavior. We use two‐phase theory to construct a model where volatile‐rich, bubbly, viscous magma rises and decompresses. We conduct numerical experiments where magma gas waves with various frequencies are imposed at the base of the model volcanic conduit. We numerically verify the results of Michaut et al. (2013, https://doi.org/10.1038/ngeo1928) and then expand on the model by allowing magma viscosity to vary as a function of dissolved water and crystal content. Numerical experiments show that gas exsolution tends to damp the growth of porosity waves during decompression. The instability and resultant growth or decay of gas wave amplitude depends strongly on the gas density gradient and the ratio of the characteristic magma extraction rate to the characteristic magma degassing rate (Damköhler number, Da). We find that slow degassing can lead to a previously unrecognized filtering effect, where low‐frequency gas waves may grow in amplitude. These waves may set the periodicity of the eruptive precursors, such as those observed at Soufrière Hills Volcano. We demonstrate that degassed, crystal‐rich magma is susceptible to the growth of gas waves which may result in the periodic behavior.J. S. J. and D. B. were supported by NSF grant EAR‐1645057. C. M. has received financial support of the IDEXLyon Project of the University of Lyon in the frame of the Programme Investissements dAvenir (ANR‐16‐IDEX‐0005)

Transcriptional landscape of epithelial and immune cell populations revealed through FACS-seq of healthy human skin.

Human skin consists of multiple cell types, including epithelial, immune, and stromal cells. Transcriptomic analyses have previously been performed from bulk skin samples or from epithelial and immune cells expanded in cell culture. However, transcriptomic analysis of bulk skin tends to drown out expression signals from relatively rare cells while cell culture methods may significantly alter cellular phenotypes and gene expression profiles. To identify distinct transcriptomic profiles of multiple cell populations without substantially altering cell phenotypes, we employed a fluorescence activated cell sorting method to isolate keratinocytes, dendritic cells, CD4+ T effector cells, and CD8+ T effector cells from healthy skin samples, followed by RNA-seq of each cell population. Principal components analysis revealed distinct clustering of cell types across samples, while differential expression and coexpression network analyses revealed transcriptional profiles of individual cell populations distinct from bulk skin, most strikingly in the least abundant CD8+ T effector population. Our work provides a high resolution view of cutaneous cellular gene expression and suggests that transcriptomic profiling of bulk skin may inadequately capture the contribution of less abundant cell types

Harnessing cross-species alignment to discover SNPs and generate a draft genome sequence of a bighorn sheep (Ovis canadensis)

Background: Whole genome sequences (WGS) have proliferated as sequencing technology continues to improve and costs decline. While many WGS of model or domestic organisms have been produced, a growing number of non-model species are also being sequenced. In the absence of a reference, construction of a genome sequence necessitates de novo assembly which may be beyond the ability of many labs due to the large volumes of raw sequence data and extensive bioinformatics required. In contrast, the presence of a reference WGS allows for alignment which is more tractable than assembly. Recent work has highlighted that the reference need not come from the same species, potentially enabling a wide array of species WGS to be constructed using cross-species alignment. Here we report on the creation a draft WGS from a single bighorn sheep (Ovis canadensis) using alignment to the closely related domestic sheep (Ovis aries). Results: Two sequencing libraries on SOLiD platforms yielded over 865 million reads, and combined alignment to the domestic sheep reference resulted in a nearly complete sequence (95% coverage of the reference) at an average of 12x read depth (104 SD). From this we discovered over 15 million variants and annotated them relative to the domestic sheep reference. We then conducted an enrichment analysis of those SNPs showing fixed differences between the reference and sequenced individual and found significant differences in a number of gene ontology (GO) terms, including those associated with reproduction, muscle properties, and bone deposition. Conclusion: Our results demonstrate that cross-species alignment enables the creation of novel WGS for non-model organisms. The bighorn sheep WGS will provide a resource for future resequencing studies or comparative genomics

Subclinical myocardial disease by cardiac magnetic resonance imaging and spectroscopy in healthy HIV/Hepatitis C virus-coinfected persons.

Objective The contribution of hepatitis C virus (HCV) infection to the risk of heart failure in human immunodeficiency virus (HIV)-coinfected persons is unknown. The objective was to characterize cardiac function and morphology in HIV-treated coinfected persons. Methods In a cross-sectional study, HIV-infected patients virologically suppressed on antiretroviral therapy without known cardiovascular disease or diabetes mellitus underwent cardiac magnetic resonance imaging and spectroscopy for measures of cardiac function, myocardial fibrosis, and steatosis. Results The study included 18 male patients with a median age of 44 years. Of these, 10 had untreated HCV coinfection and eight had HIV monoinfection. Global systolic and diastolic function in the cohort were normal, and median myocardial fat content was 0.48% (interquartile range 0.35-1.54). Left ventricular (LV) mass index and LV mass/volume ratio were significantly greater in the HIV/HCV-coinfected group compared with the HIV-monoinfected group. In the HIV-monoinfected group, there was more myocardial fibrosis as measured by extracellular volume fraction. Conclusions There were differences between HIV/HCV-coinfected and HIV-monoinfected patients in cardiac structure and morphology. Larger studies are needed to examine whether HIV and HCV independently contribute to mechanisms of heart failure

Explainable NILM Networks

There has been an explosion in the literature recently on Nonintrusive load monitoring (NILM) approaches based on neural networks and other advanced machine learning methods. However, though these methods provide competitive accuracy, the inner workings of these models is less clear. Understanding the outputs of the networks help in improving the designs, highlights the relevant features and aspects of the data used for making the decision, provides a better picture of the accuracy of the models (since a single accuracy number is often insufficient), and also inherently provides a level of trust in the value of the provided consumption feedback to the NILM end-user. Explainable Artificial Intelligence (XAI) aims to address this issue by explaining these “black-boxes”. XAI methods, developed for image and text-based methods, can in many cases interpret well the outputs of complex models, making them transparent. However, explaining time-series data inference remains a challenge. In this paper, we show how some XAI-based approaches can be used to explain NILM deep learning-based autoencoders inner workings, and examine why the network performs or does not perform well in certain cases

'Spillout' effect in gold nanoclusters embedded in c-Al2O3(0001) matrix

Gold nanoclusters are grown by 1.8 MeV Au^\sup{2+} implantation on c-Al\sub{2}O\sub{3}(0001)substrate and subsequent air annealing at temperatures 1273K. Post-annealed samples show plasmon resonance in the optical (561-579 nm) region for average cluster sizes ~1.72-2.4 nm. A redshift of the plasmon peak with decreasing cluster size in the post-annealed samples is assigned to the 'spillout' effect (reduction of electron density) for clusters with ~157-427 number of Au atoms fully embedded in crystalline dielectric matrix with increased polarizability in the embedded system.Comment: 14 Pages (figures included); Accepted in Chem. Phys. Lett (In Press

Oregon's Dungeness crab fishery : an economic analysis of productivity and profitability

Published September 1975. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalo

Characterization of Host-Cell Line Specific Glycosylation Profiles of Early Transmitted/Founder HIV-1 gp120 Envelope Proteins

Glycosylation plays an essential role in regulating protein function by modulating biological, structural, and therapeutic properties. However, due to its inherent heterogeneity and diversity, the comprehensive analysis of protein glycosylation remains a challenge. As part of our continuing effort in the analysis of glycosylation profiles of recombinant HIV-1 envelope-based immunogens, we evaluated and compared the host-cell specific glycosylation pattern of recombinant HIV-1 surface glycoprotein, gp120, derived from clade C transmitted/founder virus 1086.C expressed in Chinese hamster ovary (CHO) and human embryonic kidney containing T antigen (293T) cell lines. We used an integrated glycopeptide-based mass mapping workflow that includes a partial deglycosylation step described in our previous study1 with the inclusion of the fragmentation technique, electron transfer dissociation (ETD), to complement collision induced dissociation (CID). The inclusion of ETD facilitated the analysis by providing additional validation for glycopeptide identification and expanding the identified glycopeptides to include coverage of O-linked glycosylation. The site-specific glycosylation analysis shows that the transmitted/founder 1086.C gp120 expressed in CHO and 293T displayed distinct similarities and differences. For N-linked glycosylation, two sites (N386 and N392), in the V4 region were populated with high mannose glycans in the CHO cell-derived 1086.C gp120, while these sites had a mixture of high mannose and processed glycans in the 293T cell-derived 1086.C gp120. Compositional analysis of O-linked glycans revealed that 293T cell-derived 1086.C gp120 consisted of cores 1, 2, and 4 type O-linked glycans while CHO cell-derived 1086.C exclusively consisted of core 1 type O-linked glycans. Overall, glycosylation site occupancy of the CHO and 293T cell-derived 1086.C gp120 show high degree of similarity except for one site at N88 in the C1 region. This site was partially occupied in 293T-gp120 but fully occupied in CHO-gp120. Site-specific glycopeptide analysis of transmitted/founder 1086.C gp120 expressed in CHO cells revealed the presence of phosphorylated glycans while 293T cell produced 1086.C gp120 glycans were not phosphorylated. While the influence of phosphorylated glycans on immunogenicity is unclear, distinguishing host-cell specific variations in glycosylation profiles provides insights into the similarity (or difference) in recombinant vaccine products. While these differences had minimal effect on envelope antigenicity, they may be important in considering immunogenicity and functional capacities of recombinant envelope proteins produced in different expression systems