The Conserved nhaAR Operon Is Drastically Divergent between B2 and Non-B2 Escherichia coli and Is Involved in Extra-Intestinal Virulence

The Escherichia coli species is divided in phylogenetic groups that differ in their virulence and commensal distribution. Strains belonging to the B2 group are involved in extra-intestinal pathologies but also appear to be more prevalent as commensals among human occidental populations. To investigate the genetic specificities of B2 sub-group, we used 128 sequenced genomes and identified genes of the core genome that showed marked difference between B2 and non-B2 genomes. We focused on the gene and its surrounding region with the strongest divergence between B2 and non-B2, the antiporter gene nhaA. This gene is part of the nhaAR operon, which is in the core genome but flanked by mobile regions, and is involved in growth at high pH and high sodium concentrations. Consistently, we found that a panel of non-B2 strains grew faster than B2 at high pH and high sodium concentrations. However, we could not identify differences in expression of the nhaAR operon using fluorescence reporter plasmids. Furthermore, the operon deletion had no differential impact between B2 and non-B2 strains, and did not result in a fitness modification in a murine model of gut colonization. Nevertheless, sequence analysis and experiments in a murine model of septicemia revealed that recombination in nhaA among B2 strains was observed in strains with low virulence. Finally, nhaA and nhaAR operon deletions drastically decreased virulence in one B2 strain. This effect of nhaAR deletion appeared to be stronger than deletion of all pathogenicity islands. Thus, a population genetic approach allowed us to identify an operon in the core genome without strong effect in commensalism but with an important role in extra-intestinal virulence, a landmark of the B2 strains

Physical Conditions in Orion's Veil

Orion's veil consists of several layers of largely neutral gas lying between us and the main ionizing stars of the Orion nebula. It is visible in 21cm H I absorption and in optical and UV absorption lines of H I and other species. Toward the Trapezium, the veil has two remarkable properties, high magnetic field (~100 microGauss) and a surprising lack of molecular hydrogen given its total hydrogen column density. Here we compute photoionization models of the veil to establish its gas density and its distance from the Trapezium. We use a greatly improved model of the hydrogen molecule that determines level populations in ~1e5 rotational/vibrational levels and provides improved estimates of molecular hydrogen destruction via the Lyman-Werner bands. Our best fit photoionization models place the veil 1-3 pc in front of the star at a density of 1e3-1e4 cubic centimeters. Magnetic energy dominates the energy of non-thermal motions in at least one of the 21cm H I velocity components. Therefore, the veil is the first interstellar environment where magnetic dominance appears to exist. We find that the low ratio of molecular to atomic hydrogen (< 1e-4) is a consequence of high UV flux incident upon the veil due to its proximity to the Trapezium stars and the absence of small grains in the region.Comment: 45 pages, 20 figures, accepted for publication in Ap

Physical Conditoins in Orion's Veil II: A Multi-Component Study of the Line of Sight Toward the Trapezium

Orion's Veil is an absorbing screen that lies along the line of sight to the Orion H II region. It consists of two or more layers of gas that must lie within a few parsecs of the Trapezium cluster. Our previous work considered the Veil as a whole and found that the magnetic field dominates the energetics of the gas in at least one component. Here we use high-resolution STIS UV spectra that resolve the two velocity components in absorption and determine the conditions in each. We derive a volume hydrogen density, 21 cm spin temperature, turbulent velocity, and kinetic temperature, for each. We combine these estimates with magnetic field measurements to find that magnetic energy significantly dominates turbulent and thermal energies in one component, while the other component is close to equipartition between turbulent and magnetic energies. We observe molecular hydrogen absorption for highly excited v, J levels that are photoexcited by the stellar continuum, and detect blueshifted S III and P III. These ions must arise from ionized gas between the mostly neutral portions of the Veil and the Trapezium and shields the Veil from ionizing radiation. We find that this layer of ionized gas is also responsible for He I absorption in the Veil, which resolves a 40-year-old debate on the origin of He I absorption towards the Trapezium. Finally, we determine that the ionized and mostly atomic layers of the Veil will collide in less than 85,000 years.Comment: 43 pages, 15 figures, to be published in Ap

Uptake by end-users of a PUB approach made available as a Web Service

A consolidated geomorphology-based approach for discharge hydrograph Prediction in Ungauged Basins (PUB) through deconvolution of discharge signals from gauged donor catchments, their transposition and their convolution towards target outlets, has been made available online to end-users through a Web Service (Web Processing Service Application Programming Interface – WPS API) for the synoptic peninsular region of Brittany, France. In the spirit of hydrological services, the SIMFEN Web Service allows anyone to execute the hydrological modelling online through OGC® interoperability standards; collection of public hydrometric data; connection to a pre-existing Web Service for geomorphometric analysis; and online visualization. Thanks to tangible indicators, we here show how the users' community is actually active in using the Web Service, i.e. in uptaking the recent science-operational translation of a scientific development into a Service.</p

Naltrexone Blocks Endorphins Released when Dancing in Synchrony

Group synchronised dance is hypothesised to activate the Endogenous Opioid System (EOS), thereby increasing pain threshold, and encouraging social closeness. Previous studies have been limited to the use of pain threshold as a proxy indicator of EOS activation. We conducted a double-blind administration of placebo and naltrexone (an endorphin antagonist) before groups of strangers danced in synchrony and measured both pain threshold and sense of belonging to the group after dancing. A 100 mg dose of naltrexone resulted in significant hyperalgesic effects compared to the control participants, confirming that increases in pain threshold in the control group are due to activation of the EOS and release of endorphins during synchronised dancing. However, there was no significant effect of treatment on perceptions of social closeness. Social bonding during dance may plausibly be underpinned by elements of the EOS not blocked by naltrexone and/or interactions with other neurohormones and socio-cognitive mechanisms

High-excitation OH and H_2O lines in Markarian 231: the molecular signatures of compact far-infrared continuum sources

The ISO/LWS far-infrared spectrum of the ultraluminous galaxy Mkn 231 shows OH and H_2O lines in absorption from energy levels up to 300 K above the ground state, and emission in the [O I] 63 micron and [C II] 158 micron lines. Our analysis shows that OH and H_2O are radiatively pumped by the far-infrared continuum emission of the galaxy. The absorptions in the high-excitation lines require high far-infrared radiation densities, allowing us to constrain the properties of the underlying continuum source. The bulk of the far-infrared continuum arises from a warm (T_dust=70-100 K), optically thick (tau_100micron=1-2) medium of effective diameter 200-400 pc. In our best-fit model of total luminosity L_IR, the observed OH and H2O high-lying lines arise from a luminous (L/L_IR~0.56) region with radius ~100 pc. The high surface brightness of this component suggests that its infrared emission is dominated by the AGN. The derived column densities N(OH)>~10^{17} cm^{-2} and N(H_2O)>~6x10^{16} cm^{-2} may indicate XDR chemistry, although significant starburst chemistry cannot be ruled out. The lower-lying OH, [C II] 158 micron, and [O I] 63 micron lines arise from a more extended (~350 pc) starburst region. We show that the [C II] deficit in Mkn 231 is compatible with a high average abundance of C+ because of an extreme overall luminosity to gas mass ratio. Therefore, a [C II] deficit may indicate a significant contribution to the luminosity by an AGN, and/or by extremely efficient star formation.Comment: 16 pages, 6 figures, accepted for publication in The Astrophysical Journa

An Interstellar Conduction Front Within a Wolf-Rayet Ring Nebula Observed with the GHRS

With the High Resolution Spectrograph aboard the Hubble Space Telescope we obtained high signal-to-noise (S/N > 200 - 600 per 17 km/s resolution element) spectra of narrow absorption lines toward the Wolf-Rayet star HD 50896. The ring nebula S308 that surrounds this star is thought to be caused by a pressure-driven bubble bounded by circumstellar gas (most likely from a red supergiant or luminous blue variable progenitor) pushed aside by a strong stellar wind. Our observation has shown for the first time that blueshifted (approximately 70 km/s relative to the star) absorption components of C IV and N V arise in a conduction front between the hot interior of the bubble and the cold shell of swept-up material. These lines set limits on models of the conduction front. Nitrogen in the shell appears to be overabundant by a factor ~10. The P Cygni profiles of N V and C IV are variable, possibly due to a suspected binary companion to HD 50896.Comment: 32 pages, Latex, to appear in the Astrophysical Journal, April, 199

Infrared Spectroscopy of Molecular Supernova Remnants

We present Infrared Space Observatory spectroscopy of sites in the supernova remnants W28, W44, and 3C391, where blast waves are impacting molecular clouds. Atomic fine-structure lines were detected from C, N, O, Si, P, and Fe. The S(3) and S(9) lines of H2 were detected for all three remnants. The observations require both shocks into gas with moderate (~ 100 /cm3) and high (~10,000 /cm3) pre-shock densities, with the moderate density shocks producing the ionic lines and the high density shock producing the molecular lines. No single shock model can account for all of the observed lines, even at the order of magnitude level. We find that the principal coolants of radiative supernova shocks in moderate-density gas are the far-infrared continuum from dust grains surviving the shock, followed by collisionally-excited [O I] 63.2 and [Si II] 34.8 micron lines. The principal coolant of the high-density shocks is collisionally-excited H2 rotational and ro-vibrational line emission. We systematically examine the ground-state fine structure of all cosmically abundant elements, to explain the presence or lack of all atomic fine lines in our spectra in terms of the atomic structure, interstellar abundances, and a moderate-density, partially-ionized plasma. The [P II] line at 60.6 microns is the first known astronomical detection. There is one bright unidentified line in our spectra, at 74.26 microns. The presence of bright [Si II] and [Fe II] lines requires partial destruction of the dust. The required gas-phase abundance of Fe suggests 15-30% of the Fe-bearing grains were destroyed. The infrared continuum brightness requires ~1 Msun of dust survives the shock, suggesting about 1/3 of the dust mass was destroyed, in agreement with the depletion estimate and with theoretical models for dust destruction.Comment: 40 pages; 10 figures; accepted by ApJ July 11, 200

Comparison of hospital course of geriatric inpatients with or without active cancer: a bicentric case-control study

BACKGROUND: The hospital course of older patients with cancer hospitalized in geriatrics units remain poorly known. The aim of our study was to compare the clinical characteristics and hospital courses of geriatric inpatients with or without active cancer. METHODS: A case-control study was conducted in 2013 in the geriatric acute care units of Angers University Hospital and Le Mans Hospital, France, to compare 204 consecutive cases with cancer (mean age, 85.4±5.5 years; 42.6% male) and 1,020 controls without active cancer (mean age, 85.5±5.8 years; 42.6% male) matched for age, gender, recruitment period and center. Hospital courses were evaluated by the length of hospital stay and the in-hospital mortality. The place of life, body mass index, cumulative illness rating scale-geriatrics (CIRS-G) score, history of falls, and reason for admission were used as covariates. RESULTS: Cases with active cancer exhibited a higher (i.e., worse) CIRS-G score (p&lt;0.001) and were hospitalized more often for an organic failure (p&lt;0.001) than controls. The hospital stay of cases was longer (16.3±13.0 days versus 12.6±9.4 days, p&lt;0.001), and their in-hospital mortality rate was higher than controls (23.5% versus 5.6%, p&lt;0.001). After adjustment, having an active cancer was associated with increased length of hospital stay (β=3.3, p&lt;0.001) and greater in-hospital mortality (OR=4.4, p&lt;0.001). CONCLUSION: The length of hospital stay and in-hospital mortality rate were greater in geriatric patients with active cancer compared to controls, which reflects more complicated hospital courses in this population