The recovery of octocoral populations following periodic disturbance masks their vulnerability to persistent global change

Funding: This research was funded by the US National Science Foundation through a series of grants to PJE (OCE 13-32915 and OCE 17-56678) and HRL (OCE 13-34052, OCE 17-56381 and OCE 18-01475) and was carried out under the necessary permits from the National Park Service (most recently VIIS-2019-SCI-0022).As the major form of coral reef regime shift, stony coral to macroalgal transitions have received considerable attention. In the Caribbean, however, regime shifts in which scleractinian corals are replaced by octocoral assemblages hold potential for maintaining reef associated communities. Accordingly, forecasting the resilience of octocoral assemblages to future disturbance regimes is necessary to understand these assemblages’ capacity to maintain reef biodiversity. We parameterised integral projection models quantifying the survival, growth, and recruitment of the octocorals, Antillogorgia americana, Gorgonia ventalina, and Eunicea flexuosa, in St John, US Virgin Islands, before, during, and after severe hurricane disturbance. Using these models, we forecast the density of populations of each species under varying future hurricane regimes. We demonstrate that although hurricanes reduce population growth, A. americana, G. ventalina, and E. flexuosa each display a capacity for quick recovery following storm disturbance. Despite this recovery potential, we illustrate how the population dynamics of each species correspond with a longer- term decline in their population densities. Despite their resilience to periodic physical disturbance events, ongoing global change jeopardises the future viability of octocoral assemblages.Peer reviewe

The JCMT Nearby Galaxies Legacy Survey VII: H\alpha{} imaging and massive star formation properties

We present H\alpha{} fluxes, star formation rates (SFRs) and equivalent widths (EWs) for a sample of 156 nearby galaxies observed in the 12CO J=3-2 line as part of the James Clerk Maxwell Telescope Nearby Galaxies Legacy Survey. These are derived from images and values in the literature and from new H\alpha{} images for 72 galaxies which we publish here. We describe the sample, observations and procedures to extract the H\alpha{} fluxes and related quantities. We discuss the SFR properties of our sample and confirm the well-known correlation with galaxy luminosity, albeit with high dispersion. Our SFRs range from 0.1 to 11 Msun yr-1 with a median SFR value for the complete sample of 0.2 Msun yr-1. This median values is somewhat lower than similar published measurements, which we attribute, in part, to our sample being HI-selected and, thus, not biased towards high SFRs as has frequently been the case in previous studies. Additionally, we calculate internal absorptions for the H\alpha{} line, A(H\alpha{}), which are lower than many of those used in previous studies. Our derived EWs, which range from 1 to 880\AA{} with a median value of 27\AA{}, show little dependence with luminosity but rise by a factor of five from early- to late-type galaxies. This paper is the first in a series aimed at comparing SFRs obtained from H\alpha{} imaging of galaxies with information derived from other tracers of star formation and atomic and molecular gas.Comment: Accepted for publication in MNRAS. 47 pages, 18 figure

The Discovery of New Galaxy Members in the NGC 5044 and NGC 1052 Groups

We present the results of neutral hydrogen (HI) observations of the NGC 5044 and NGC 1052 groups, as part of a GEMS (Group Evolution Multiwavelength Study) investigation into the formation and evolution of galaxies in nearby groups. Two new group members have been discovered during a wide-field HI imaging survey conducted using the ATNF Parkes telescope. These results, as well as those from followup HI synthesis and optical imaging, are presented here. J1320-1427, a new member of the NGC 5044 Group, has an HI mass of M_HI=1.05e9Msun and M_HI/L_B=1.65 Msun/Lsun, with a radial velocity of v=2750km/s. The optical galaxy is characterised by two regions of star formation, surrounded by an extended, diffuse halo. J0249-0806, the new member of the NGC 1052 Group, has M_HI=5.4e8Msun, M_HI/L_R=1.13 Msun/Lsun and v=1450km/s. The optical image reveals a low surface brightness galaxy. We interpret both of these galaxies as irregular type, with J0249-0806 possibly undergoing first infall into the NGC 1052 group.Comment: Accepted for publication in MNRAS. 21 pages, 13 figures. Also available with high-resolution figures at http://www.astro.livjm.ac.uk/~npfm/Papers/mmb04.ps.g

Cosmological Distance Measurement of 12 Nearby Supernovae IIP with ROTSE-IIIB

We present cosmological analysis of 12 nearby ($z<0.06$) Type IIP supernovae (SNe IIP) observed with the ROTSE-IIIb telescope. To achieve precise photometry, we present a new image differencing technique that is implemented for the first time on the ROTSE SN photometry pipeline. With this method, we find up to a 20\% increase in the detection efficiency and significant reduction in residual RMS scatter of the SN lightcurves when compared to the previous pipeline performance. We use the published optical spectra and broadband photometry of well studied SNe IIP to establish temporal models for ejecta velocity and photospheric temperature evolution for our SNe IIP population. This study yields measurements that are competitive to other methods even when the data are limited to a single epoch during the photospheric phase of SNe IIP. Using the fully reduced ROTSE photometry and optical spectra, we apply these models to the respective photometric epochs for each SN in the ROTSE IIP sample. This facilitates the use of the Expanding Photosphere Method (EPM) to obtain distance estimates to their respective host galaxies. We then perform cosmological parameter fitting using these EPM distances from which we measure the Hubble constant to be $72.9^{+5.7}_{-4.3}~{\rm kms^{-1}~Mpc^{-1}}$, which is consistent with the standard $\Lambda CDM$ model values derived using other independent techniques.Comment: 19 pages, 13 figure

Forward Global Photometric Calibration of the Dark Energy Survey

Many scientific goals for the Dark Energy Survey (DES) require calibration of optical/NIR broadband $b = grizY$ photometry that is stable in time and uniform over the celestial sky to one percent or better. It is also necessary to limit to similar accuracy systematic uncertainty in the calibrated broadband magnitudes due to uncertainty in the spectrum of the source. Here we present a "Forward Global Calibration Method (FGCM)" for photometric calibration of the DES, and we present results of its application to the first three years of the survey (Y3A1). The FGCM combines data taken with auxiliary instrumentation at the observatory with data from the broad-band survey imaging itself and models of the instrument and atmosphere to estimate the spatial- and time-dependence of the passbands of individual DES survey exposures. "Standard" passbands are chosen that are typical of the passbands encountered during the survey. The passband of any individual observation is combined with an estimate of the source spectral shape to yield a magnitude $m_b^{\mathrm{std}}$ in the standard system. This "chromatic correction" to the standard system is necessary to achieve sub-percent calibrations. The FGCM achieves reproducible and stable photometric calibration of standard magnitudes $m_b^{\mathrm{std}}$ of stellar sources over the multi-year Y3A1 data sample with residual random calibration errors of $\sigma=5-6\,\mathrm{mmag}$ per exposure. The accuracy of the calibration is uniform across the $5000\,\mathrm{deg}^2$ DES footprint to within $\sigma=7\,\mathrm{mmag}$. The systematic uncertainties of magnitudes in the standard system due to the spectra of sources are less than $5\,\mathrm{mmag}$ for main sequence stars with $0.5<g-i<3.0$.Comment: 25 pages, submitted to A

Genetic characterization of morphologically variant strains of Paracoccidioides brasiliensis

Molecular characterization of Paracoccidioides brasiliensis variant strains that had been preserved under mineral oil for decades was carried out by random amplified polymorphic DNA analysis (RAPD). On P. brasiliensis variants in the transitional phase and strains with typical morphology, RAPD produced reproducible polymorphic amplification products that differentiated them. A dendrogram based on the generated RAPD patterns placed the 14 P. brasiliensis strains into five groups with similarity coefficients of 72%. A high correlation between the genotypic and phenotypic characteristics of the strains was observed. A 750 bp-RAPD fragment found only in the wild-type phenotype strains was cloned and sequenced. Genetic similarity analysis using BLASTx suggested that this RAPD marker represents a putative domain of a hypothetical flavin-binding monooxygenase (FMO)-like protein of Neurospora crassa.FiocruzBritish Council Progra

Forward Global Photometric Calibration of the Dark Energy Survey

Many scientific goals for the Dark Energy Survey (DES) require the calibration of optical/NIR broadband b = grizY photometry that is stable in time and uniform over the celestial sky to one percent or better. It is also necessary to limit to similar accuracy systematic uncertainty in the calibrated broadband magnitudes due to uncertainty in the spectrum of the source. Here we present a "Forward Global Calibration Method (FGCM)" for photometric calibration of the DES, and we present results of its application to the first three years of the survey (Y3A1). The FGCM combines data taken with auxiliary instrumentation at the observatory with data from the broadband survey imaging itself and models of the instrument and atmosphere to estimate the spatial and time dependences of the passbands of individual DES survey exposures. "Standard" passbands that are typical of the passbands encountered during the survey are chosen. The passband of any individual observation is combined with an estimate of the source spectral shape to yield a magnitude m(b)(std) in the standard system. This " chromatic correction" to the standard system is necessary to achieve subpercent calibrations and in particular, to resolve ambiguity between the broadband brightness of a source and the shape of its SED. The FGCM achieves a reproducible and stable photometric calibration of standard magnitudes m(b)(std) of stellar sources over the multiyear Y3A1 data sample with residual random calibration errors of sigma = 6-7 mmag per exposure. The accuracy of the calibration is uniform across the 5000 deg(2) DES footprint to within sigma = 7 mmag. The systematic uncertainties of magnitudes in the standard system due to the spectra of sources are less than 5 mmag for main-sequence stars with 0.5 < g-i < 3.0