Monte Carlo simulations applied to AlxGayIn(1-x-y)X quaternary alloys (X=As,P,N): A comparative study

We develop a different Monte Carlo approach applied to the A(x)B(y)C(1-x-y)D quaternary alloys. Combined with first-principles total-energy calculations, the thermodynamic properties of the (AI,Ga,In)X (X=As, P, or N) systems are obtained and a comparative study is developed in order to understand the roles of As, P, and N atoms as the anion X in the system AlxGayIn1-x-yX. Also, we study the thermodynamics of specific compositions in which AlGaInN, AlGaInP, and AlGaInAs are lattice matched, respectively, to the GaN, GaAs, and InP substrates. We verify that the tendency for phase separation is always towards the formation of an In-rich phase. For arsenides and phosphides this occurs in general for lower temperatures than for their usual growth temperatures. This makes these alloys very stable against phase separation. However, for nitrides the In and/or Al concentrations have to be limited in order to avoid the formation of In-rich clusters and, even for low concentrations of In and/or Al, we observe a tendency of composition fluctuations towards the clustering of the ternary GaInN. We suggest that this latter behavior can explain the formation of the InGaN-like nanoclusters recently observed in the AlGaInN quaternary alloys.712

Microscopic description of the phase separation process in AlxGayIn1-x-yN quaternary alloys

Ab initio total energy electronic structure calculations are combined with Monte Carlo simulations to study the thermodynamic properties of AlxGayIn1-x-yN quaternary alloys. We provide a microscopic description of the phase separation process by analyzing the thermodynamic behavior of the different atoms with respect to the temperature and cation contents. We obtained, at growth temperatures, the range of compositions for the stable and unstable phases. The presence of Al in InGaN is proven to "catalyze" the phase separation process for the formation of the In-rich phase. Based on our results, we propose that the ultraviolet emission currently seen in samples containing AlInGaN quaternaries arises from the matrix of a random alloy, in which composition fluctuations toward InGaN- and AlGaN-like alloys formation may be present, and that a coexisting emission in the green-blue region results from the In-rich segregated clusters.70

Phase stability, chemical bonds, and gap bowing of InxGa1-xN alloys: Comparison between cubic and wurtzite structures

Thermodynamic, structural, and electronic properties of wurtzite InxGa1-xN alloys are studied by combining first-principles total energy calculations with the generalized quasichemical approach, and compared to previous results for the zinc-blende structure. Results for bond-lengths, second-nearest-neighbors distances, and bowing parameter are presented. We observed that the wurtzite results are not significantly different from the ones obtained previously for the zinc-blende structure. The calculated phase diagram of the alloy shows a broad and asymmetric miscibility gap as in the zinc-blende case, with a similar range for the growth temperatures, although with a higher critical temperature. We found a value of 1.44 eV for the gap bowing parameter giving support to the recent smaller band gap bowing findings. We emphasize that other theoretical results may suffer from incomplete sets of atomic configurations to properly describe the alloy properties, and experimental findings. Moreover one must take into account a broad composition range in order to obtain reliable results.74

Theoretical prediction of ferromagnetic MnN layers embedded in wurtzite GaN

We studied, using the spin density functional theory, the manganese mononitride (MnN) grown on GaN in the wurtzite phase, forming the GaN/MnN heterostructures. We obtained a ferromagnetic ground state with a higher magnetic moment than the hypothetical wurtzite bulk MnN. This behavior can be explained in terms of the high magnetization of the MnN interface monolayers that have longer first and second neighbors bond lengths due to structure relaxation. We suggest that this system can be applied to the new spintronics technology by being able to provide spin polarized carriers in the important wide-gap nitride systems.88

Environmental surveillance and in vitro activity of antimicrobial agents against Legionella pneumophila isolated from hospital water systems in Campania, South Italy: a 5-year study.

Abstract Background Legionellosis' treatment failures have been recently reported showing the possibility of resistance development to traditional therapy, especially in healthcare related disease cases. Environmental impact of antibiotic residues, especially in hospital waters, may act on the resistome of Legionella resulting in developing resistance mechanisms. Objectives In this study we investigate the antibiotic susceptibility of environmental Legionella pneumophila (Lpn) strains isolated from hospital water systems in Campania, a region located in Southwest Italy. Methods 5321 hospital water samples were investigated for the presence of Lpn. Among positive samples, antibiotic susceptibility was tested for a random subset of 125 Lpn strains (25 Lpn isolates from each of the following serogroups: 1, 3, 5, 6, 8). Susceptibility testing was performed, using the E-test on buffered charcoal yeast extract agar supplemented with α-ketoglutarate, for 10 antimicrobial drugs: azithromycin, cefotaxime, clarithromycin, doxycycline, erythromycin, rifampicin, tigecycline, ciprofloxacin, levofloxacin and moxifloxacin. Non parametric tests were used to determine and assess the significant differences in susceptibility to the different antimicrobics between the serogroups. Results Among the isolated strains, none showed resistance to the antibiotics tested. Rifampicin was the most active antibiotic against overall Legionella strains, followed by levofloxacin. Between the macrolides the clarithromycin was overall the most active drug, instead the azithromycin was the less active. Analyzing the different serogroups a significant difference was found between serogroup 1 and non-1 serogroup isolates for doxycycline and tigecycline. Conclusions Antibiotic susceptibility of environmental isolates of Legionella spp. might be useful for the early detection of resistance to antibiotics that directly impacts on mortality and length of hospital stay

Genome of the Avirulent Human-Infective Trypanosome—Trypanosoma rangeli

Background: Trypanosoma rangeli is a hemoflagellate protozoan parasite infecting humans and other wild and domestic mammals across Central and South America. It does not cause human disease, but it can be mistaken for the etiologic agent of Chagas disease, Trypanosoma cruzi. We have sequenced the T. rangeli genome to provide new tools for elucidating the distinct and intriguing biology of this species and the key pathways related to interaction with its arthropod and mammalian hosts.  Methodology/Principal Findings: The T. rangeli haploid genome is ,24 Mb in length, and is the smallest and least repetitive trypanosomatid genome sequenced thus far. This parasite genome has shorter subtelomeric sequences compared to those of T. cruzi and T. brucei; displays intraspecific karyotype variability and lacks minichromosomes. Of the predicted 7,613 protein coding sequences, functional annotations could be determined for 2,415, while 5,043 are hypothetical proteins, some with evidence of protein expression. 7,101 genes (93%) are shared with other trypanosomatids that infect humans. An ortholog of the dcl2 gene involved in the T. brucei RNAi pathway was found in T. rangeli, but the RNAi machinery is non-functional since the other genes in this pathway are pseudogenized. T. rangeli is highly susceptible to oxidative stress, a phenotype that may be explained by a smaller number of anti-oxidant defense enzymes and heatshock proteins.  Conclusions/Significance: Phylogenetic comparison of nuclear and mitochondrial genes indicates that T. rangeli and T. cruzi are equidistant from T. brucei. In addition to revealing new aspects of trypanosome co-evolution within the vertebrate and invertebrate hosts, comparative genomic analysis with pathogenic trypanosomatids provides valuable new information that can be further explored with the aim of developing better diagnostic tools and/or therapeutic targets