Design of a remote data subscription mechanism

The CERN 26 GeV Proton Synchrotron (PS) accelerator complex produces a sequence of different beams in cycles of a duration of 1.2 sec or multiple of it. A Main Control Room operator, supervising the functioning of (part of) an accelerator for a particular beam, needs to coherently display on his workstation the beam-dependent data in synchronism with this particular cycle (within a certain time delay). The classical data collection via synchronous Remote Procedure Calls cannot fully answer to these requirements. The PS Data Subscription Mechanism addresses the above-mentioned problems: · it allows a client application in a Workstation to dynamically request accelerator data synchronised to a particular beam; · the client collects data related to the same beam from different front-ends The paper exposes the CERN PS specific requirements, and the solution proposed, based on functional data-groups and providing the additional functionality of monitoring process data (i.e., send on change)

RotAB Weed toolbox

The toolbox is a handbook of methods for weed monitoring in organic long-term arable experiments. It has been developed based on the expertise of French agronomists in charge of such experiments. The toolbox is composed of an excel file (can be found on Organic Eprints orgprints.org/31937) that provides an overview of the methods and indicators to be calculated and 7 fact sheets detailing different weed monitoring methods. The tool has been developed for organic agriculture but could be used in conventional agriculture. The fact sheets are applicable in all European pedo-climatic conditions

The malaria parasite cyclic GMP-dependent protein kinase plays a central role in blood-stage schizogony

A role for the Plasmodium falciparum cyclic GMP (cGMP)-dependent protein kinase (PfPKG) in gametogenesis in the malaria parasite was elucidated previously. In the present study we examined the role of PfPKG in the asexual blood-stage of the parasite life cycle, the stage that causes malaria pathology. A specific PKG inhibitor (compound 1, a trisubstituted pyrrole) prevented the progression of P. falciparum schizonts through to ring stages in erythrocyte invasion assays. Addition of compound 1 to ring-stage parasites allowed normal development up to 30 h postinvasion, and segmented schizonts were able to form. However, synchronized schizonts treated with compound 1 for ≥6 h became large and dysmorphic and were unable to rupture or liberate merozoites. To conclusively demonstrate that the effect of compound 1 on schizogony was due to its selective action on PfPKG, we utilized genetically manipulated P. falciparum parasites expressing a compound 1-insensitive PfPKG. The mutant parasites were able to complete schizogony in the presence of compound 1 but not in the presence of the broad-spectrum protein kinase inhibitor staurosporine. This shows that PfPKG is the primary target of compound 1 during schizogony and provides direct evidence of a role for PfPKG in this process. Discovery of essential roles for the P. falciparum PKG in both asexual and sexual development demonstrates that cGMP signaling is a key regulator of both of these crucial life cycle phases and defines this molecule as an exciting potential drug target for both therapeutic and transmission blocking action against malaria

Real-time backstepping control for fuel cell vehicle using supercapacitors

A key issue of real-time applications is ensuring the operation by taking into account the stability constraints. For multisource vehicles, stability is impacted by the multisource interactions. Backstepping control ensures stable control for most classes of nonlinear systems. Nevertheless, no backstepping control in real time has been yet proposed for multisource vehicles. The objective of this paper is to apply the backstepping control to a multisource vehicle with fuel cell and supercapacitors for real-time implementation. A distribution criterion is used to allocate energy between sources. Experimental results demonstrate that the developed backstepping control can be implemented in real-time conditions. The supercapacitors can thus help the fuel cell to meet the requirements of the load with a guarantee of system stability. © 1967-2012 IEEE

Quantum hypercomputation based on the dynamical algebra su(1,1)

An adaptation of Kieu's hypercomputational quantum algorithm (KHQA) is presented. The method that was used was to replace the Weyl-Heisenberg algebra by other dynamical algebra of low dimension that admits infinite-dimensional irreducible representations with naturally defined generalized coherent states. We have selected the Lie algebra $\mathfrak{su}(1,1)$, due to that this algebra posses the necessary characteristics for to realize the hypercomputation and also due to that such algebra has been identified as the dynamical algebra associated to many relatively simple quantum systems. In addition to an algebraic adaptation of KHQA over the algebra $\mathfrak{su}(1,1)$, we presented an adaptations of KHQA over some concrete physical referents: the infinite square well, the infinite cylindrical well, the perturbed infinite cylindrical well, the P{\"o}sch-Teller potentials, the Holstein-Primakoff system, and the Laguerre oscillator. We conclude that it is possible to have many physical systems within condensed matter and quantum optics on which it is possible to consider an implementation of KHQA.Comment: 25 pages, 1 figure, conclusions rewritten, typing and language errors corrected and latex format changed minor changes elsewhere and

Impact of mineral dust on short wave and long wave radiation: evaluation of different vertically resolved parameterization sin 1-D radiative transfer computations

Aerosol radiative properties are investigated in southeastern Spain during a dust event on 16–17 June 2013 in the framework of the ChArMEx/ADRIMED (Chemistry-Aerosol Mediterranean Experiment/Aerosol Direct Radiative Impact on the regional climate in the MEDiterranean region) campaign. Particle optical and microphysical properties from ground-based sun/sky photometer and lidar measurements, as well as in situ measurements on board the SAFIRE ATR 42 French research aircraft, are used to create a set of different levels of input parameterizations, which feed the 1-D radiative transfer model (RTM) GAME (Global Atmospheric ModEl). We consider three datasets: (1) a first parameterization based on the retrievals by an advanced aerosol inversion code (GRASP; Generalized Retrieval of Aerosol and Surface Properties) applied to combined photometer and lidar data, (2) a parameterization based on the photometer columnar optical properties and vertically resolved lidar retrievals with the two-component Klett–Fernald algorithm, and (3) a parameterization based on vertically resolved optical and microphysical aerosol properties measured in situ by the aircraft instrumentation. Once retrieved, the outputs of the RTM in terms of both shortwave and longwave radiative fluxes are compared against ground and in situ airborne measurements. In addition, the outputs of the model in terms of the aerosol direct radiative effect are discussed with respect to the different input parameterizations. Results show that calculated atmospheric radiative fluxes differ no more than 7 % from the measured ones. The three parameterization datasets produce a cooling effect due to mineral dust both at the surface and the top of the atmosphere. Aerosol radiative effects with differences of up to 10 W m−2 in the shortwave spectral range (mostly due to differences in the aerosol optical depth) and 2 W m−2 for the longwave spectral range (mainly due to differences in the aerosol optical depth but also to the coarse mode radius used to calculate the radiative properties) are obtained when comparing the three parameterizations. The study reveals the complexity of parameterizing 1-D RTMs as sizing and characterizing the optical properties of mineral dust is challenging. The use of advanced remote sensing data and processing, in combination with closure studies on the optical and microphysical properties from in situ aircraft measurements when available, is recommended.This work is part of the ChArMEx project supported by CNRS-INSU, ADEME, Météo-France, and CEA in the framework of the multidisciplinary program MISTRALS (Mediterranean Integrated STudies at Regional And Local Scales; http://mistrals-home.org/, last access: 15 January 2018). Lidar measurements were supported by the ACTRIS (Aerosols, Clouds, and Trace Gases Research Infrastructure Network) Research Infrastructure Project funded by the European Union's Horizon 2020 research and innovation program under grant agreement no. 654109. The Barcelona team acknowledges the Spanish Ministry of Economy and Competitiveness (project TEC2015-63832-P) and EFRD (European Fund for Regional Development); the Department of Economy and Knowledge of the Catalan autonomous government (grant 2014 SGR 583) and the Unidad de Excelencia Maria de Maeztu (project MDM-2016-0600) financed by the Spanish Agencia Estatal de Investigación. The authors also thank the Spanish Ministry of Science, Innovation and Universities (ref. CGL2017-90884-REDT). This work was also supported by the Juan de la Cierva-Formación program (grant FJCI-2015-23904). Paola Formenti and Cyrielle Denjean acknowledge the support of the French National Research Agency (ANR) through the ADRIMED program (contract ANR-11-BS56-0006)

Molecular simulations unravel the molecular principles that mediate selective permeability of carboxysome shell protein

Bacterial microcompartments (BMCs) are nanoscale proteinaceous organelles that encapsulate enzymes from the cytoplasm using an icosahedral protein shell that resembles viral capsids. Of particular interest are the carboxysomes (CBs), which sequester the CO 2 -fixing enzymes ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) to enhance carbon assimilation. The carboxysome shell serves as a semi-permeable barrier for passage of metabolites in and out of the carboxysome to enhance CO 2 fixation. How the protein shell directs influx and efflux of molecules in an effective manner has remained elusive. Here we use molecular dynamics and umbrella sampling calculations to determine the free-energy profiles of the metabolic substrates, bicarbonate, CO 2 and ribulose bisphosphate and the product 3-phosphoglycerate associated with their transition through the major carboxysome shell protein CcmK2. We elucidate the electrostatic charge-based permeability and key amino acid residues of CcmK2 functioning in mediating molecular transit through the central pore. Conformational changes of the loops forming the central pore may also be required for transit of specific metabolites. The importance of these in-silico findings is validated experimentally by site-directed mutagenesis of the key CcmK2 residue Serine 39. This study provides insight into the mechanism that mediates molecular transport through the shells of carboxysomes, applicable to other BMCs. It also offers a predictive approach to investigate and manipulate the shell permeability, with the intend of engineering BMC-based metabolic modules for new functions in synthetic biology

Solubility Enhancement of Steviol Glycosides and Characterization of Their Inclusion Complexes with Gamma-Cyclodextrin

Steviol glycosidesrebaudioside (reb) A, C and D have low aqueous solubilities. To improve their aqueous solubilities, inclusion complex of steviol glycosides, reb A, C and D and gamma cyclodextrin were prepared by freeze drying method and further characterized by means of differential scanning calorimetry, Fourier transform infrared spectroscopy and Raman spectroscopy. The effect of gamma cyclodextrin on chemical shifts of the steviol glycosides was also studied in proton NMR experiments as well as in solid state 13C CP/MAS NMR experiments. These results indicated that the steviol glycosides were clearly in inclusion complex formation with the gamma cyclodextrin which also results in solubility enhancement of these steviol glycosides. Phase solubility studies showed that amounts of soluble reb A, C and D increased with increasing amounts of gamma cyclodextrin indicating formation of 1:1 stoichiometric and higher order inclusion complexes

Molecular recognition of the native HIV-1 MPER revealed by STED microscopy of single virions

Antibodies against the Membrane-Proximal External Region (MPER) of the Env gp41 subunit neutralize HIV-1 with exceptional breadth and potency. Due to the lack of knowledge on the MPER native structure and accessibility, different and exclusive models have been proposed for the molecular mechanism of MPER recognition by broadly neutralizing antibodies. Here, accessibility of antibodies to the native Env MPER on single virions has been addressed through STED microscopy. STED imaging of fluorescently labeled Fabs reveals a common pattern of native Env recognition for HIV-1 antibodies targeting MPER or the surface subunit gp120. In the case of anti-MPER antibodies, the process evolves with extra contribution of interactions with the viral lipid membrane to binding specificity. Our data provide biophysical insights into the recognition of the potent and broadly neutralizing MPER epitope on HIV virions, and as such is of importance for the design of therapeutic interventions