1,106 research outputs found
Channels Ran Through It—The Lawrence Formation at Lone Star Lake, Douglas County, Kansas
The upper part of the Ireland Sandstone Member of the Lawrence Formation exposed in the spillway of Lone Star Lake, southwest of Lawrence, Kansas, consists of abundant pinstripe-bedded shales and siltstones; thin, lenticular sandstone and siltstone beds; and meter-scale, channel-form sandstone and mudstone lenses. Soft-sediment-deformation structures, including load casts, ball-and-pillow, and pseudonodules are abundant. The lenticular and pinstripe bedding with bipolar paleocurrents suggests tide-influenced deposition. The crosscutting, channel-form deposits are interpreted as tidal channels in an environment with low energy but rapid sedimentation. The depositional environment was a tide-dominated, muddy upper estuary cut by tidal channels. Gravitational instabilities resulting from rapid deposition of sand over saturated mud produced inverse-density gradients that resulted in soft-sediment deformation
Prey range and genome evolution of Halobacteriovorax marinus predatory bacteria from an estuary
© The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in mSphere 3 (2018): e00508-17, doi:10.1128/mSphere.00508-17.Halobacteriovorax strains are saltwater-adapted predatory bacteria that attack Gram-negative bacteria and may play an important role in shaping microbial communities. To understand how Halobacteriovorax strains impact ecosystems and develop them as biocontrol agents, it is important to characterize variation in predation phenotypes and investigate Halobacteriovorax genome evolution. We isolated Halobacteriovorax marinus BE01 from an estuary in Rhode Island using Vibrio from the same site as prey. Small, fast-moving, attack-phase BE01 cells attach to and invade prey cells, consistent with the intraperiplasmic predation strategy of the H. marinus type strain, SJ. BE01 is a prey generalist, forming plaques on Vibrio strains from the estuary, Pseudomonas from soil, and Escherichia coli. Genome analysis revealed extremely high conservation of gene order and amino acid sequences between BE01 and SJ, suggesting strong selective pressure to maintain the genome in this H. marinus lineage. Despite this, we identified two regions of gene content difference that likely resulted from horizontal gene transfer. Analysis of modal codon usage frequencies supports the hypothesis that these regions were acquired from bacteria with different codon usage biases than H. marinus. In one of these regions, BE01 and SJ carry different genes associated with mobile genetic elements. Acquired functions in BE01 include the dnd operon, which encodes a pathway for DNA modification, and a suite of genes involved in membrane synthesis and regulation of gene expression that was likely acquired from another Halobacteriovorax lineage. This analysis provides further evidence that horizontal gene transfer plays an important role in genome evolution in predatory bacteria.This research was supported by an Institutional Development award (IDeA) from the
National Institute of General Medical Sciences of the National Institutes of Health under
grant no. P20GM103430 and funding from Providence College
Revisiting OSIRIS-REx Touch-And-Go (TAG) Performance Given the Realities of Asteroid Bennu
The Origins, Spectral Interpretation, Resource Identification, and SecurityRegolith Explorer (OSIRIS-REx) mission is a NASA New Frontiers mission that launched in 2016 and rendezvoused with the near-Earth asteroid (101955) Bennu in late 2018. Upon arrival, the surface of Bennu was found to be much rockier than expected. The original Touch-and-Go (TAG) requirement for sample collection was to deliver the spacecraft to a site with a 25-meter radius; however, the largest hazard-free sites are no larger than 8 meters in radius. To accommodate the dearth of safe sample collection sites, the project reevaluated all aspects of flight system performance pertaining to TAG in order to account for the demonstrated performance of the spacecraft and navigation prediction accuracies. More-over, the project has base lined on board natural feature tracking instead of lidar for providing the on board navigation state update during the TAG sequence. This paper summarizes the improvements in error source estimation, enhancements in on board trajectory correction, and results of recent Monte Carlo simulation to en-able sample collection with the given constraints. TAG delivery and on board navigation performance are presented for the final four candidate TAG sites
The ultraluminous GRB 110918A
GRB 110918A is the brightest long GRB detected by Konus-WIND during its 19
years of continuous observations and the most luminous GRB ever observed since
the beginning of the cosmological era in 1997. We report on the final IPN
localization of this event and its detailed multiwavelength study with a number
of space-based instruments. The prompt emission is characterized by a typical
duration, a moderare of the time-integrated spectrum, and strong
hard-to-soft evolution. The high observed energy fluence yields, at z=0.984, a
huge isotropic-equivalent energy release
erg. The record-breaking energy flux observed at the peak of the short, bright,
hard initial pulse results in an unprecedented isotropic-equivalent luminosity
erg s. A tail of the soft gamma-ray
emission was detected with temporal and spectral behavior typical of that
predicted by the synchrotron forward-shock model. Swift/XRT and Swift/UVOT
observed the bright afterglow from 1.2 to 48 days after the burst and revealed
no evidence of a jet break. The post-break scenario for the afterglow is
preferred from our analysis, with a hard underlying electron spectrum and
ISM-like circumburst environment implied. We conclude that, among multiple
reasons investigated, the tight collimation of the jet must have been a key
ingredient to produce this unusually bright burst. The inferred jet opening
angle of 1.7-3.4 deg results in reasonable values of the collimation-corrected
radiated energy and the peak luminosity, which, however, are still at the top
of their distributions for such tightly collimated events. We estimate a
detection horizon for a similar ultraluminous GRB of for Konus-WIND,
and for Swift/BAT, which stresses the importance of GRBs as probes of
the early Universe.Comment: 22 pages, 20 figures, accepted for publication in Ap
Factors Associated with the Emergence of K65R in Patients with HIV-1 Infection Treated with Combination Antiretroviral Therapy Containing Tenofovir
Background. The human immunodeficiency virus type 1 reverse-transcriptase mutation K65R is a single-point mutation that has become more frequent after increased use of tenofovir disoproxil fumarate (TDF). We aimed to identify predictors for the emergence of K65R, using clinical data and genotypic resistance tests from the Swiss HIV Cohort Study. Methods. A total of 222 patients with genotypic resistance tests performed while receiving treatment with TDF-containing regimens were stratified by detectability of K65R (K65R group, 42 patients; undetected K65R group, 180 patients). Patient characteristics at start of that treatment were analyzed. Results. In an adjusted logistic regression, TDF treatment with nonnucleoside reverse-transcriptase inhibitors and/or didanosine was associated with the emergence of K65R, whereas the presence of any of the thymidine analogue mutations D67N, K70R, T215F, or K219E/Q was protective. The previously undescribed mutational pattern K65R/G190S/Y181C was observed in 6 of 21 patients treated with efavirenz and TDF. Salvage therapy after TDF treatment was started for 36 patients with K65R and for 118 patients from the wild-type group. Proportions of patients attaining human immunodeficiency virus type 1 loads <50 copies/mL after 24 weeks of continuous treatment were similar for the K65R group (44.1%; 95% confidence interval, 27.2%-62.1%) and the wild-type group (51.9%; 95% confidence interval, 42.0%-61.6%). Conclusions. In settings where thymidine analogue mutations are less likely to be present, such as at start of first-line therapy or after extended treatment interruptions, combinations of TDF with other K65R-inducing components or with efavirenz or nevirapine may carry an enhanced risk of the emergence of K65R. The finding of a distinct mutational pattern selected by treatment with TDF and efavirenz suggests a potential fitness interaction between K65R and nonnucleoside reverse-transcriptase inhibitor-induced mutation
Incidence of HIV-1 Drug Resistance Among Antiretroviral Treatment-Naive Individuals Starting Modern Therapy Combinations
By use of simulations we imputed human immunodeficiency virus type 1 drug resistance incidence to protease inhibitor-based or nonnucleoside reverse-transcriptase inhibitor-based combination therapy. We found that novel drugs such as tenofovir or boosted atazanavir lead to less drug resistance, most likely because of better tolerabilit
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