Dynamics of colliding branes and black brane production

We study the dynamics of colliding domain walls including self-gravity. The initial data is set up by applying a BPS domain wall in five-dimensional supergravity, and we evolve the system determining the final outcome of collisions. After a collision, a spacelike curvature singularity covered by a horizon is formed in the bulk, resulting in a black brane with trapped domain walls. This is a generic consequence of collisions, except for non-relativistic weak field cases, in which the walls pass through one another or multiple bounces take place without singularity formation. These results show that incorporating the self-gravity drastically changes a naive picture of colliding branes.Comment: 5 pages, 5 figures references adde

Probing anisotropies of gravitational-wave backgroundswith a space-based interferometer II: Perturbative reconstruction of a low-frequency skymap

We present a perturbative reconstruction method to make a skymap of gravitational-wave backgrounds (GWBs) observed via space-based interferometer. In the presence of anisotropies in GWBs, the cross-correlated signals of observed GWBs are inherently time-dependent due to the non-stationarity of the gravitational-wave detector. Since the cross-correlated signal is obtained through an all-sky integral of primary signals convolving with the antenna pattern function of gravitational-wave detectors, the non-stationarity of cross-correlated signals, together with full knowledge of antenna pattern functions, can be used to reconstruct an intensity map of the GWBs. Here, we give two simple methods to reconstruct a skymap of GWBs based on the perturbative expansion in low-frequency regime. The first one is based on harmonic-Fourier representation of data streams and the second is based on "direct" time-series data. The latter method enables us to create a skymap in a direct manner. The reconstruction technique is demonstrated in the case of the Galactic gravitational wave background observed via planned space interferometer, LISA. Although the angular resolution of low-frequency skymap is rather restricted, the methodology presented here would be helpful in discriminating the GWBs of galactic origins by those of the extragalactic and/or cosmological origins.Comment: 23 pages, 12 figures, Phys.Rev.D (2005) in pres

Six-dimensional localized black holes: numerical solutions

To test the strong-gravity regime in Randall-Sundrum braneworlds, we consider black holes bound to a brane. In a previous paper, we studied numerical solutions of localized black holes whose horizon radii are smaller than the AdS curvature radius. In this paper, we improve the numerical method and discuss properties of the six dimensional (6D) localized black holes whose horizon radii are larger than the AdS curvature radius. At a horizon temperature $\mathcal{T} \approx 1/2\pi \ell$, the thermodynamics of the localized black hole undergo a transition with its character changing from a 6D Schwarzschild black hole type to a 6D black string type. The specific heat of the localized black holes is negative, and the entropy is greater than or nearly equal to that of the 6D black strings with the same thermodynamic mass. The large localized black holes show flattened horizon geometries, and the intrinsic curvature of the horizon four-geometry becomes negative near the brane. Our results indicate that the recovery mechanism of lower-dimensional Einstein gravity on the brane works even in the presence of the black holes.Comment: 17 pages, 9 figures, RevTeX4, typos correcte

Three-dimensional MHD Simulations of Jets from Accretion Disks

We report the results of 3-dimensional magnetohydrodynamic (MHD) simulations of a jet formation by the interaction between an accretion disk and a large scale magnetic field. The disk is not treated as a boundary condition but is solved self-consistently. To investigate the stability of MHD jet, the accretion disk is perturbed with a non-axisymmetric sinusoidal or random fluctuation of the rotational velocity. The dependences of the jet velocity $(v_z)$, mass outflow rate $(\dot{M}_w)$, and mass accretion rate $(\dot{M}_a)$ on the initial magnetic field strength in both non-axisymmetric cases are similar to those in the axisymmetric case. That is, $v_z \propto B_0^{1/3}$, $\dot{M}_w \propto B_0$ and $\dot{M}_a \propto B_0^{1.4}$ where $B_0$ is the initial magnetic field strength. The former two relations are consistent with the Michel's steady solution, $v_z \propto (B_0^2/\dot{M}_w)^{1/3}$, although the jet and accretion do not reach the steady state. In both perturbation cases, a non-axisymmetric structure with $m=2$ appears in the jet, where $m$ means the azimuthal wave number. This structure can not be explained by Kelvin-Helmholtz instability and seems to originate in the accretion disk. Non-axisymmetric modes in the jet reach almost constant levels after about 1.5 orbital periods of the accretion disk, while all modes in the accretion disk grow with oscillation. As for the angular momentum transport by Maxwell stress, the vertical component, $$, is comparable to the radial component,$$, in the wide range of initial magnetic field strength.Comment: Accepted for publication in ApJ. The pdf file with high resolution figures can be downloaded at http://www.kusastro.kyoto-u.ac.jp/~hiromitu/3j050806.pd

Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology

Background It is essential to understand and predict the effects of changing environments on plants. This review focuses on the sexual reproduction of plants, as previous studies have suggested that this trait is particularly vulnerable to climate change, and because a number of ecologically and evolutionarily relevant genes have been identified. Scope It is proposed that studying gene functions in naturally fluctuating conditions, or gene functions in natura, is important to predict responses to changing environments. First, we discuss flowering time, an extensively studied example of phenotypic plasticity. The quantitative approaches of ecological and evolutionary systems biology have been used to analyse the expression of a key flowering gene, FLC, of Arabidopsis halleri in naturally fluctuating environments. Modelling showed that FLC acts as a quantitative tracer of the temperature over the preceding 6 weeks. The predictions of this model were verified experimentally, confirming its applicability to future climate changes. Second, the evolution of self-compatibility as exemplifying an evolutionary response is discussed. Evolutionary genomic and functional analyses have indicated that A. thaliana became self-compatible via a loss-of-function mutation in the male specificity gene, SCR/SP11. Self-compatibility evolved during glacial-interglacial cycles, suggesting its association with mate limitation during migration. Although the evolution of self-compatibility may confer short-term advantages, it is predicted to increase the risk of extinction in the long term because loss-of-function mutations are virtually irreversible. Conclusions Recent studies of FLC and SCR have identified gene functions in natura that are unlikely to be found in laboratory experiments. The significance of epigenetic changes and the study of non-model species with next-generation DNA sequencers is also discusse

Detecting a stochastic background of gravitational waves in the presence of non-Gaussian noise: A performance of generalized cross-correlation statistic

We discuss a robust data analysis method to detect a stochastic background of gravitational waves in the presence of non-Gaussian noise. In contrast to the standard cross-correlation (SCC) statistic frequently used in the stochastic background searches, we consider a {\it generalized cross-correlation} (GCC) statistic, which is nearly optimal even in the presence of non-Gaussian noise. The detection efficiency of the GCC statistic is investigated analytically, particularly focusing on the statistical relation between the false-alarm and the false-dismissal probabilities, and the minimum detectable amplitude of gravitational-wave signals. We derive simple analytic formulae for these statistical quantities. The robustness of the GCC statistic is clarified based on these formulae, and one finds that the detection efficiency of the GCC statistic roughly corresponds to the one of the SCC statistic neglecting the contribution of non-Gaussian tails. This remarkable property is checked by performing the Monte Carlo simulations and successful agreement between analytic and simulation results was found.Comment: 15 pages, 8 figures, presentation and some figures modified, final version to be published in PR

The Stability of Magnetized Rotating Plasmas with Superthermal Fields

During the last decade it has become evident that the magnetorotational instability is at the heart of the enhanced angular momentum transport in weakly magnetized accretion disks around neutron stars and black holes. In this paper, we investigate the local linear stability of differentially rotating, magnetized flows and the evolution of the magnetorotational instability beyond the weak-field limit. We show that, when superthermal toroidal fields are considered, the effects of both compressibility and magnetic tension forces, which are related to the curvature of toroidal field lines, should be taken fully into account. We demonstrate that the presence of a strong toroidal component in the magnetic field plays a non-trivial role. When strong fields are considered, the strength of the toroidal magnetic field not only modifies the growth rates of the unstable modes but also determines which modes are subject to instabilities. We find that, for rotating configurations with Keplerian laws, the magnetorotational instability is stabilized at low wavenumbers for toroidal Alfven speeds exceeding the geometric mean of the sound speed and the rotational speed. We discuss the significance of our findings for the stability of cold, magnetically dominated, rotating fluids and argue that, for these systems, the curvature of toroidal field lines cannot be neglected even when short wavelength perturbations are considered. We also comment on the implications of our results for the validity of shearing box simulations in which superthermal toroidal fields are generated.Comment: 24 pages, 12 figures. Accepted for publication in ApJ. Sections 2 and 5 substantially expanded, added Appendix A and 3 figures with respect to previous version. Animations are available at http://www.physics.arizona.edu/~mpessah/research

RNA-Seq reveals virus–virus and virus–plant interactions in nature

As research on plant viruses has focused mainly on crop diseases, little is known about these viruses in natural environments. To understand the ecology of viruses in natural systems, comprehensive information on virus–virus and virus–host interactions is required. We applied RNA-Seq to plants from a natural population of Arabidopsis halleri subsp. gemmifera to simultaneously determine the presence/absence of all sequence-reported viruses, identify novel viruses and quantify the host transcriptome. By introducing the criteria of read number and genome coverage, we detected infections by Turnip mosaic virus (TuMV), Cucumber mosaic virus and Brassica yellows virus. Active TuMV replication was observed by ultramicroscopy. De novo assembly further identified a novel partitivirus, Arabidopsis halleri partitivirus 1. Interestingly, virus reads reached a maximum level that was equivalent to that of the host's total mRNA, although asymptomatic infection was common. AhgAGO2, a key gene in host defence systems, was upregulated in TuMV-infected plants. Multiple infection was frequent in TuMV-infected leaves, suggesting that TuMV facilitates multiple infection, probably by suppressing host RNA silencing. Revealing hidden plant–virus interactions in nature can enhance our understanding of biological interactions and may have agricultural applications

Quadrupole formula for Kaluza-Klein modes in the braneworld

The quadrupole formula in four-dimensional Einstein gravity is a useful tool to describe gravitational wave radiation. We derive the quadrupole formula for the Kaluza-Klein (KK) modes in the Randall-Sundrum braneworld model. The quadrupole formula provides transparent representation of the exterior weak gravitational field induced by localized sources. We find that a general isolated dynamical source gives rise to the 1/r^2 correction to the leading 1/r gravitational field. We apply the formula to an evaluation of the effective energy carried by the KK modes from the viewpoint of an observer on the brane. Contrary to the ordinary gravitational waves (zero mode), the flux of the induced KK modes by the non-spherical part of the quadrupole moment vanishes at infinity and only the spherical part contributes to the flux. Since the effect of the KK modes appears in the linear order of the metric perturbations, the effective energy flux observed on the brane is not always positive, but can become negative depending on the motion of the localized sources.Comment: 9 pages, no figures, REVTeX 4; version accepted for publication in CQ

New generalized nonspherical black hole solutions

We present numerical evidence for the existence of several types of static black hole solutions with a nonspherical event horizon topology in $d\geq 6$ spacetime dimensions. These asymptotically flat configurations are found for a specific metric ansatz and can be viewed as higher dimensional counterparts of the $d=5$ static black rings, dirings and black Saturn. Similar to that case, they are supported against collapse by conical singularities. The issue of rotating generalizations of these solutions is also considered.Comment: 47 pages, 11 figures, some comments adde