A multidimensional platform for the purification of non-coding RNA species

A renewed interest in non-coding RNA (ncRNA) has led to the discovery of novel RNA species and post-transcriptional ribonucleoside modifications, and an emerging appreciation for the role of ncRNA in RNA epigenetics. Although much can be learned by amplification-based analysis of ncRNA sequence and quantity, there is a significant need for direct analysis of RNA, which has led to numerous methods for purification of specific ncRNA molecules. However, no single method allows purification of the full range of cellular ncRNA species. To this end, we developed a multidimensional chromatographic platform to resolve, isolate and quantify all canonical ncRNAs in a single sample of cells or tissue, as well as novel ncRNA species. The applicability of the platform is demonstrated in analyses of ncRNA from bacteria, human cells and plasmodium-infected reticulocytes, as well as a viral RNA genome. Among the many potential applications of this platform are a system-level analysis of the dozens of modified ribonucleosides in ncRNA, characterization of novel long ncRNA species, enhanced detection of rare transcript variants and analysis of viral genomes.Singapore-MIT Alliance for Research and TechnologyNational Institute of Environmental Health Sciences (ES017010)National Institute of Environmental Health Sciences (ES002109

Aphids of the genus Diuraphis caught by Johnson suction trap in Poznan, Poland

In 1973–2011 in Poznań, aphid catches were carried out using Johnson’s suction trap. Since then the suction trap located at the Institute of Plant Protection – National Research Institute in Poznań has continuously recorded the daily and seasonal dynamics of aphid flights. The collected results has been used to establish one of the largest databases of this type in Europe. The data also allow tracking changes in aphid biodiversity under the changing climatic conditions. Three aphid species of Diuraphis spp. were identified: D. muehlei (Börner, 1950) – in 1974, D. bromicola (Hille Ris Lambers, 1959) – in 1988, D. noxia (Kurdjumov, 1913) – in 2003 as a result of systematic and long-term aphid collections. The occurrence of D. noxia presents a particular risk to cereal crops in Poland. This expansive aphid species that originates from Asia and the Mediterranean is a vector of Barley yellow dwarf viruses (BYDV), and has become one of the most important pest of wheat and barley in the world. Changes in climatic conditions that have been observed in recent years in Poland such as hot summer, long and warm autumn, mild winter seem to be optimal for occurrence and development of aphid species from warmer parts of Europe