Comparative ultrafast spectroscopy and structural analysis of OCP1 and OCP2 from Tolypothrix.

The orange carotenoid protein (OCP) is a structurally and functionally modular photoactive protein involved in cyanobacterial photoprotection. Recently, based on bioinformatic analysis and phylogenetic relationships, new families of OCP have been described, OCP2 and OCPx. The first characterization of the OCP2 showed both faster photoconversion and back-conversion, and lower fluorescence quenching of phycobilisomes relative to the well-characterized OCP1. Moreover, OCP2 is not regulated by the fluorescence recovery protein (FRP). In this work, we present a comprehensive study combining ultrafast spectroscopy and structural analysis to compare the photoactivation mechanisms of OCP1 and OCP2 from Tolypothrix PCC 7601. We show that despite significant differences in their functional characteristics, the spectroscopic properties of OCP1 and OCP2 are comparable. This indicates that the OCP functionality is not directly related to the spectroscopic properties of the bound carotenoid. In addition, the structural analysis by X-ray footprinting reveals that, overall, OCP1 and OCP2 have grossly the same photoactivation mechanism. However, the OCP2 is less reactive to radiolytic labeling, suggesting that the protein is less flexible than OCP1. This observation could explain fast photoconversion of OCP2

Optical and infrared spectroelectrochemical studies of CN-substituted bipyridyl complexes of Ruthenium(II)

Ruthenium(II) polypyridyl complexes [Ru(CNMe-bpy)x(bpy)3−x]2+ (CN-Me-bpy = 4,4′-dicyano-5,5′-dimethyl2,2′-bipyridine, bpy = 2,2′-bipyridine, and x =1−3, abbreviated as 12+, 22+, and 32+) undergo four (12+) orfive (22+ and 32+) successive one-electron reduction steps between −1.3 and −2.75 V versus ferrocenium/ferrocene (Fc+/Fc) in tetrahydrofuran. The CN-Me-bpy ligands are reduced first, with successive one-electron reductions in 22+ and 32+ being separated by 150−210 mV; reduction of the unsubstituted bpy ligand in 12+ and 22+ occurs only when all CN-Me-bpy ligands have been converted to their radical anions. Absorption spectra of the first three reduction products of each complex were measured across the UV, visible, near-IR (NIR), and mid-IR regions and interpreted with the help of density functional theory calculations. Reduction of the CN-Mebpy ligand shifts the ν(CN) IR band by ca. −45 cm−1, enhances its intensity ∼35 times, and splits the symmetrical and antisymmetrical modes. Semireduced complexes containing two and three CN-derivatized ligands 2+, 3+, and 30 show distinct ν(C N) features due to the presence of both CN-Me-bpy and CN-Me-bpy•−, confirming that each reduction is localized on a single ligand. NIR spectra of 10, 1−, and 2− exhibit a prominent band attributable to the CN-Me-bpy•− moiety between 6000 and 7500 cm−1, whereas bpy•−-based absorption occurs between 4500 and 6000 cm−1; complexes 2+, 3+, and 30 also exhibit a band at ca. 3300 cm−1 due to a CN-Me-bpy•− → CN-Me-bpy interligand charge-transfer transition. In the UV−vis region, the decrease of π → π* intraligand bands of the neutral ligands and the emergence of the corresponding bands of the radical anions are most diagnostic. The first reduction product of 12+ is spectroscopically similar to the lowest triplet metal-to-ligand charge-transfer excited state, which shows pronounced NIR absorption, and its ν(CN) IR band is shifted by −38 cm−1 and 5−7-fold-enhanced relative to the ground state

2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem.

Phototrophic Gemmatimonadetes evolved the ability to use solar energy following horizontal transfer of photosynthesis-related genes from an ancient phototrophic proteobacterium. The electron cryo-microscopy structure of the Gemmatimonas phototrophica photosystem at 2.4 Å reveals a unique, double-ring complex. Two unique membrane-extrinsic polypeptides, RC-S and RC-U, hold the central type 2 reaction center (RC) within an inner 16-subunit light-harvesting 1 (LH1) ring, which is encircled by an outer 24-subunit antenna ring (LHh) that adds light-gathering capacity. Femtosecond kinetics reveal the flow of energy within the RC-dLH complex, from the outer LHh ring to LH1 and then to the RC. This structural and functional study shows that G. phototrophica has independently evolved its own compact, robust, and highly effective architecture for harvesting and trapping solar energy

2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem.

Phototrophic Gemmatimonadetes evolved the ability to use solar energy following horizontal transfer of photosynthesis-related genes from an ancient phototrophic proteobacterium. The electron cryo-microscopy structure of the Gemmatimonas phototrophica photosystem at 2.4 Å reveals a unique, double-ring complex. Two unique membrane-extrinsic polypeptides, RC-S and RC-U, hold the central type 2 reaction center (RC) within an inner 16-subunit light-harvesting 1 (LH1) ring, which is encircled by an outer 24-subunit antenna ring (LHh) that adds light-gathering capacity. Femtosecond kinetics reveal the flow of energy within the RC-dLH complex, from the outer LHh ring to LH1 and then to the RC. This structural and functional study shows that G. phototrophica has independently evolved its own compact, robust, and highly effective architecture for harvesting and trapping solar energy

Energy transfer pathways in reconstituted peridinin chlorophyll complexes

The main objective of this thesis is to study energy transfer pathways between carotenoids and chlorophylls in the reconstituted light harvesting protein, peridinin chlorophyll protein (PCP), of the marine dinoflagellate Amphidinium carterae. The reconstituted PCP complex contains either bacteriochlorophyll-a or a mixture of bacteriochlorophyll-a and chlorophyll-b instead of chlorophyll-a that occurs in the native PCP. The introduction and methods of the thesis describes spectroscopic properties of carotenoids with emphasis on the carotenoid peridinin, and a brief introduction to the femtosecond pump probe spectroscopy and global fitting analysis used for treating the time resolved spectra. The main results, dependence of the peridinin to bacteriochlorophyll-a energy transfer pathways on excitation wavelength and energy transfer between chlorophylls, are described and discussed in the results of the thesis. Prohlašuji, že svoji diplomovou práci jsem vypracoval samostatně pouze s použitím pramenů a literatury uvedené v seznamu citované literatury. Prohlašuji, že v souladu s § 47b zákona č.111/1998 SB. v platném znění souhlasím se zveřejněním své diplomové práce, a to v nezkrácené podobě elektronickou cestou ve veřejně přístupné části databáze STAG provozované Jihočeskou univerzitou v Českých Budějovicích a na jejích internetových stránkách

Spectral watermarking in femtosecond stimulated Raman spectroscopy: resolving the nature of the carotenoid S-star state

A new method for recording femtosecond stimulated Raman spectra was developed that dramatically improves and automatizes baseline problems. Instead of using a narrowband Raman source, the experiment is performed using shaping of a broadband source. This allows locking the signal into carefully crafted watermarks that can be recovered from measured data with high fidelity. The approach uses unique properties of Raman scattering, thus allowing a direct recording of stimulated Raman signals with robust rejection of baselines and fixed-pattern-noise. Low cost technology for generating required pulse-shapes was developed and demonstrated. The methodology is applicable to any Raman experiment but primarily targets Femtosecond Stimulated Raman spectroscopy (FSRS) where a lack of robust methods for parasitic signal rejection has been a major obstacle in the practical development of the field in the last decade. The delivered improvement in FSRS experiments was demonstrated by recording evidence that the so-called S∗ state of carotenoids in solution corresponds to the optically forbidden

The photochemistry of sodium ion pump rhodopsin observed by watermarked femto- to submillisecond stimulated Raman spectroscopy

Krokinobacter rhodopsin 2 (KR2) is a recently discovered light-driven N

Molecular Origin of Photoprotection in Cyanobacteria Probed by Watermarked Femtosecond Stimulated Raman Spectroscopy

Photoprotection is fundamental in photosynthesis to avoid oxidative photodamage upon excess light exposure. Excited chlorophylls (Chl) are quenched by carotenoids, but the precise molecular origin remains controversial. The cyanobacterial HliC protein belongs to the Hlip family ancestral to plant light-harvesting complexes, and binds Chl a and β-carotene in 2:1 ratio. We analyzed HliC by watermarked femtosecond stimulated Raman spectroscopy to follow the time evolution of its vibrational modes. We observed a 2 ps rise of the C=C stretch band of the 2Ag - (S1) state of β-carotene upon Chl a excitation, demonstrating energy transfer quenching and fast excess-energy dissipation. We detected two distinct β-carotene conformers by the C=C stretch frequency of the 2Ag - (S1) state, but only the β-carotene whose 2Ag - energy level is significantly lowered and has a lower C=C stretch frequency is involved in quenching. It implies that the low carotenoid S1 energy that results from specific pigment-protein or pigment-pigment interactions is the key property for creating a dissipative energy channel. We conclude that watermarked femtosecond stimulated Raman spectroscopy constitutes a promising experimental method to assess energy transfer and quenching mechanisms in oxygenic photosynthesis

Strong pH-Dependent Near-Infrared Fluorescence in a Microbial Rhodopsin Reconstituted with a Red-Shifting Retinal Analogue

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