Adsorption and absorption energies of hydrogen with palladium

Thermal recombinative desorption rates of HD on Pd(111) and Pd(332) are reported from transient kinetic experiments performed between 523 and 1023 K. A detailed kinetic model accurately describes the competition between recombination of surface-adsorbed hydrogen and deuterium atoms and their diffusion into the bulk. By fitting the model to observed rates, we derive the dissociative adsorption energies (E0, adsH2 = 0.98 eV; E0, adsD2 = 1.00 eV; E0, adsHD = 0.99 eV) as well as the classical dissociative binding energy ϵads = 1.02 ± 0.03 eV, which provides a benchmark for electronic structure theory. In a similar way, we obtain the classical energy required to move an H or D atom from the surface to the bulk (ϵsb = 0.46 ± 0.01 eV) and the isotope specific energies, E0, sbH = 0.41 eV and E0, sbD = 0.43 eV. Detailed insights into the process of transient bulk diffusion are obtained from kinetic Monte Carlo simulations

Stark shift and parity non-conservation for near-degenerate states of xenon

We identify a pair of near-degenerate states of opposite parity in atomic Xe, the 5p^5 10s \,\, ^2[3/2]_2^o at $\rm{E}=94759.927$ cm$^{-1}$ and 5p^5 6f \,\, ^2[5/2]_2 at $\rm{E}= 94759.935$ cm$^{-1}$, for which parity- and time-odd effects are expected to be enhanced by the small energy separation. We present theoretical calculations which indicate narrow widths for both states and we report a calculated value for the weak matrix element, arising from configuration mixing, of $|W|=2.1$ Hz for $^{132}$Xe. In addition, we measured the Stark effect of the $5p^5\,6f$ $^2[5/2]_{2}$ and $5p^5 \,6f \ ^2[3/2]_2$ ($\rm{E} =94737.121\,\rm{cm}^{-1}$) states. The Stark-shift of the $6f$ states is observed to be negative, revealing the presence of nearby $6g$ states at higher energies, which have not been observed before. The Stark-shift measurements imply an upper limit on the weak matrix element of $|W|\!<\!5$ Hz for the near-degenerate states (10s \,\, ^2[3/2]_2^o and 6f \,\, ^2[5/2]_2), which is in agreement with the presented calculations.Comment: 11 pages, 6 figure

Genomes and Characterization of Phages Bcep22 and BcepIL02, Founders of a Novel Phage Type in Burkholderia cenocepacia

Within the Burkholderia cepacia complex, B. cenocepacia is the most common species associated with aggressive infections in the lungs of cystic fibrosis patients, causing disease that is often refractive to treatment by antibiotics. Phage therapy may be a potential alternative form of treatment for these infections. Here we describe the genome of the previously described therapeutic B. cenocepacia podophage BcepIL02 and its close relative, Bcep22. Phage Bcep22 was found to contain a circularly permuted genome of 63,882 bp containing 77 genes; BcepIL02 was found to be 62,714 bp and contains 76 predicted genes. Major virion-associated proteins were identified by proteomic analysis. We propose that these phages comprise the founding members of a novel podophage lineage, the Bcep22-like phages. Among the interesting features of these phages are a series of tandemly repeated putative tail fiber genes that are similar to each other and also to one or more such genes in the other phages. Both phages also contain an extremely large (ca. 4,600-amino-acid), virion-associated, multidomain protein that accounts for over 20% of the phages' coding capacity, is widely distributed among other bacterial and phage genomes, and may be involved in facilitating DNA entry in both phage and other mobile DNA elements. The phages, which were previously presumed to be virulent, show evidence of a temperate lifestyle but are apparently unable to form stable lysogens in their hosts. This ambiguity complicates determination of a phage lifestyle, a key consideration in the selection of therapeutic phages

Observation of direct vibrational excitation in gas-surface collisions of CO with Au(111): a new model system for surface dynamics.

We report vibrational excitation of CO from its ground (v = 0) to first excited (v = 1) vibrational state in collision with Au(111) at an incidence energy of translation of EI = 0.45 eV. Unlike past work, we can exclude an excitation mechanism involving temporary adsorption on the surface followed by thermalization and desorption. The angular distributions of the scattered CO molecules are narrow, consistent with direct scattering occurring on a sub-ps time scale. The absolute excitation probabilities are about 3% of those expected from thermal accommodation. The surface temperature dependence of excitation, which was measured between 373 and 973 K, is Arrhenius-like with an activation energy equal to the energy required for vibrational excitation. Our measurements are consistent with a vibrational excitation mechanism involving coupling of thermally excited electron–hole pairs of the solid to CO vibration

Adsorbate modification of electronic nonadiabaticity: H atom scattering from p(2 × 2) O on Pt(111)

We report inelastic differential scattering experiments for energetic H and D atoms colliding at a Pt(111) surface with and without adsorbed O atoms. Dramatically, more energy loss is seen for scattering from the Pt(111) surface compared to p(2 × 2) O on Pt(111), indicating that O adsorption reduces the probability of electron–hole pair (EHP) excitation. We produced a new full-dimensional potential energy surface for H interaction with O/Pt that reproduces density functional theory energies accurately. We then attempted to model the EHP excitation in H/D scattering with molecular dynamics simulations employing the electronic density information from the Pt(111) to calculate electronic friction at the level of the local density friction approximation (LDFA). This approach, which assumes that O atoms simply block the Pt atom from the approaching H atom, fails to reproduce experiment due to the fact that the effective collision cross section of the O atom is only 10% of the area of the surface unit cell. An empirical adiabatic sphere model that reduces electronic nonadiabaticity within an O–Pt bonding length scale of 2.8 Å reproduces experiment well, suggesting that the electronic structure changes induced by chemisorption of O atoms nearly remove the H atom’s ability to excite EHPs in the Pt. Alternatives to LDFA friction are needed to account for this adsorbate effect

Quantum effects in thermal reaction rates at metal surfaces

Accurate description of elementary steps of chemical reactions at surfaces is a long-standing challenge because of the lack of reliable experimental measurements of the corresponding rate constants, which also makes it impossible to rigorously validate theoretical estimates. Even for reactions as simple as thermal recombination of hydrogen atoms on platinum surfaces, previous experimental rate constants have only been obtained with large uncertainties. Using velocity-resolved kinetics and ion imaging–based calibration of absolute molecular beam fluxes, Borodin et al. managed to overcome established experimental difficulties and report unprecedentedly accurate rate constants for this reaction over a wide temperature range. They also demonstrate a parameter-free model that quantitatively reproduces the experiment, opening up new vistas for the growing field of computational heterogeneous catalysi