Realizing quantum gates with optically-addressable 171^{171}Yb+^{+} ion qudits

The use of multilevel information carriers, also known as qudits, is a promising path for exploring scalability of quantum computing devices. In this work, we present a proof-of-principle realization of a quantum processor that uses optically-addressed $^{171}$Yb$^{+}$ ion qudits in a linear trap. The rich level structure of $^{171}$Yb$^{+}$ ions makes it possible to use the Zeeman sublevels of the quadrupole clock transition at 435.5 nm for efficient and robust qudit encoding. We demonstrate the realization of the universal set of gates consisting of single-qudit rotations and two-qudit entangling operation with a two-ququart system, which is formally equivalent to a universal gate-based four-qubit processor. Our results paves a way towards further studies of more efficient implementations of quantum algorithms with trapped-ion-based processors.Comment: 9 pages, 3 figure

Comparison of American mink embryonic stem and induced pluripotent stem cell transcriptomes

BACKGROUND: Recently fibroblasts of many mammalian species have been reprogrammed to pluripotent state using overexpression of several transcription factors. This technology allows production of induced pluripotent stem (iPS) cells with properties similar to embryonic stem (ES) cells. The completeness of reprogramming process is well studied in such species as mouse and human but there is not enough data on other species. We produced American mink (Neovison vison) ES and iPS cells and compared these cells using transcriptome analysis. RESULTS: We report the generation of 10 mink ES and 22 iPS cell lines. The majority of the analyzed cell lines had normal diploid chromosome number. The only ES cell line with XX chromosome set had both X-chromosomes in active state that is characteristic of pluripotent cells. The pluripotency of ES and iPS cell lines was confirmed by formation of teratomas with cell types representing all three germ layers. Transcriptome analysis of mink embryonic fibroblasts (EF), two ES and two iPS cell lines allowed us to identify 11831 assembled contigs which were annotated. These led to a number of 6891 unique genes. Of these 3201 were differentially expressed between mink EF and ES cells. We analyzed expression levels of these genes in iPS cell lines. This allowed us to show that 80% of genes were correctly reprogrammed in iPS cells, whereas approximately 6% had an intermediate expression pattern, about 7% were not reprogrammed and about 5% had a "novel" expression pattern. We observed expression of pluripotency marker genes such as Oct4, Sox2 and Rex1 in ES and iPS cell lines with notable exception of Nanog. CONCLUSIONS: We had produced and characterized American mink ES and iPS cells. These cells were pluripotent by a number of criteria and iPS cells exhibited effective reprogramming. Interestingly, we had showed lack of Nanog expression and consider it as a species-specific feature

Geoeffectiveness and efficiency of CIR, Sheath and ICME in generation of magnetic storms

We investigate relative role of various types of solar wind streams in generation of magnetic storms. On the basis of the OMNI data of interplanetary measurements for the period of 1976-2000 we analyze 798 geomagnetic storms with Dst < -50 nT and their interplanetary sources: corotating interaction regions (CIR), interplanetary CME (ICME) including magnetic clouds (MC) and Ejecta and compression regions Sheath before both types of ICME. For various types of solar wind we study following relative characteristics: occurrence rate; mass, momentum, energy and magnetic fluxes; probability of generation of magnetic storm (geoeffectiveness) and efficiency of process of this generation. Obtained results show that despite magnetic clouds have lower occurrence rate and lower efficiency than CIR and Sheath they play an essential role in generation of magnetic storms due to higher geoeffectiveness of storm generation (i.e higher probability to contain large and long-term southward IMF Bz component).Comment: 23 pages, 4 figures, 3 tables, submitted to JGR special issue "Response of Geospace to High-Speed Streams

Here and there: the double-side transgene localization

Random transgene integration is a powerful tool for developing new genome-wide screening approaches. These techniques have already been used for functional gene annotation by transposon-insertion sequencing, for identification of transcription factor binding sites and regulatory sequences, and for dissecting chromatin position effects. Precise localization of transgenes and accurate artifact filtration are essential for this type of method. To date, many mapping assays have been developed, including Inverse-PCR, TLA, LAM-PCR, and splinkerette PCR. However, none of them is able to ensure localization of both transgene’s flanking regions simultaneously, which would be necessary for some applications. Here we proposed a cheap and simple NGS-based approach that overcomes this limitation. The developed assay requires using intentionally designed vectors that lack recognition sites of one or a set of restriction enzymes used for DNA fragmentation. By looping and sequencing these DNA fragments, we obtain special data that allows us to link the two flanking regions of the transposon. This can be useful for precise insertion mapping and for screening approaches in the field of chromosome engineering, where chromosomal recombination events between transgenes occur in a cell population. To demonstrate the method’s feasibility, we applied it for mapping SB transposon integration in the human HAP1 cell line. Our technique allowed us to efficiently localize genomic transposon integrations, which was confirmed via PCR analysis. For practical application of this approach, we proposed a set of recommendations and a normalization strategy. The developed method can be used for multiplex transgene localization and detection of rearrangements between them

Эколого-технологические риски применения жидкого аммиака в районах Крайнего Севера.

The risks of the emergent ecological and technical situation as a result of using liquid ammonia as a refrigerating medium in construction in Far Northern regions have been considered. Affective zone modeling/simulation during ammonia ejection into the atmosphere has been built. A model of reaction between ammonia and plastic frozen ground has been suggested. A conclusion of ammonia monitoring in the atmosphere and advisability/expediency of liquid ammonia substitution on alternative refrigerating medium, Freon-22, has been drawnРассмотрены риски возникновения чрезвычайных экологических и технических ситуаций при авариях, связанных с использованием жидкого аммиака в качестве хладагента при строительстве в зонах вечной мерзлоты. Проведено моделирование зоны поражения при выбросах аммиака в атмосферу. Предложена модель взаимодействия аммиака с пластично мерзлыми грунтами. Сделан вывод о необходимости мониторинга аммиака в атмосферном воздухе и целесообразности замены жидкого аммиака на альтернативный хладагент - хладон-22

Theory and Applications of Non-Relativistic and Relativistic Turbulent Reconnection

Realistic astrophysical environments are turbulent due to the extremely high Reynolds numbers. Therefore, the theories of reconnection intended for describing astrophysical reconnection should not ignore the effects of turbulence on magnetic reconnection. Turbulence is known to change the nature of many physical processes dramatically and in this review we claim that magnetic reconnection is not an exception. We stress that not only astrophysical turbulence is ubiquitous, but also magnetic reconnection itself induces turbulence. Thus turbulence must be accounted for in any realistic astrophysical reconnection setup. We argue that due to the similarities of MHD turbulence in relativistic and non-relativistic cases the theory of magnetic reconnection developed for the non-relativistic case can be extended to the relativistic case and we provide numerical simulations that support this conjecture. We also provide quantitative comparisons of the theoretical predictions and results of numerical experiments, including the situations when turbulent reconnection is self-driven, i.e. the turbulence in the system is generated by the reconnection process itself. We show how turbulent reconnection entails the violation of magnetic flux freezing, the conclusion that has really far reaching consequences for many realistically turbulent astrophysical environments. In addition, we consider observational testing of turbulent reconnection as well as numerous implications of the theory. The former includes the Sun and solar wind reconnection, while the latter include the process of reconnection diffusion induced by turbulent reconnection, the acceleration of energetic particles, bursts of turbulent reconnection related to black hole sources as well as gamma ray bursts. Finally, we explain why turbulent reconnection cannot be explained by turbulent resistivity or derived through the mean field approach.Comment: 66 pages, 24 figures, a chapter of the book "Magnetic Reconnection - Concepts and Applications", editors W. Gonzalez, E. N. Parke

Towards a test of the weak equivalence principle of gravity using anti-hydrogen at CERN

International audienceThe aim of the GBAR (Gravitational Behavior of Antimatter at Rest) experiment is to measure the free fall acceleration of an antihydrogen atom, in the terrestrial gravitational field at CERN and therefore test the Weak Equivalence Principle with antimatter. The aim is to measure the local gravity with a 1% uncertainty which can be reduced to few parts of 10-3