The Evolution of Supernovae in Circumstellar Wind-Blown Bubbles I. Introduction and One-Dimensional Calculations

Mass loss from massive stars (\ga 8 \msun) can result in the formation of circumstellar wind blown cavities surrounding the star, bordered by a thin, dense, cold shell. When the star explodes as a core-collapse supernova (SN), the resulting shock wave will interact with this modified medium around the star, rather than the interstellar medium. In this work we first explore the nature of the circumstellar medium around massive stars in various evolutionary stages. This is followed by a study of the evolution of SNe within these wind-blown bubbles. The evolution depends primarily on a single parameter $\Lambda$, the ratio of the mass of the dense shell to that of the ejected material. We investigate the evolution for different values of this parameter. We also plot approximate X-ray surface brightness plots from the simulations. Our results show that in many cases the SN remnant spends a significant amount of time within the bubble. The low density within the bubble can delay the onset of the Sedov stage, and may end up reducing the amount of time spent in the Sedov stage. The complicated density profile within the bubble makes it difficult to infer the mass-loss properties of the pre-SN star by studying the evolution of the resulting supernova remnant.Comment: 42 pages, 13 figures. Submitted to the Astrophysical Journal, Sept 200

An Assessment of Dynamical Mass Constraints on Pre-Main Sequence Evolutionary Tracks

[abridged] We have assembled a database of stars having both masses determined from measured orbital dynamics and sufficient spectral and photometric information for their placement on a theoretical HR diagram. Our sample consists of 115 low mass (M < 2.0 Msun) stars, 27 pre-main sequence and 88 main sequence. We use a variety of available pre-main sequence evolutionary calculations to test the consistency of predicted stellar masses with dynamically determined masses. Despite substantial improvements in model physics over the past decade, large systematic discrepancies still exist between empirical and theoretically derived masses. For main-sequence stars, all models considered predict masses consistent with dynamical values above 1.2 Msun, some models predict consistent masses at solar or slightly lower masses, and no models predict consistent masses below 0.5 Msun but rather all models systematically under-predict such low masses by 5-20%. The failure at low masses stems from the poor match of most models to the empirical main-sequence below temperatures of 3800 K where molecules become the dominant source of opacity and convection is the dominant mode of energy transport. For the pre-main sequence sample we find similar trends. There is generally good agreement between predicted and dynamical masses above 1.2 Msun for all models. Below 1.2 Msun and down to 0.3 Msun (the lowest mass testable) most evolutionary models systematically under-predict the dynamically determined masses by 10-30% on average with the Lyon group models (e.g. Baraffe et al. 1998) predicting marginally consistent masses *in the mean* though with large scatter.Comment: accepted for publication in ApJ (2004

Sedimentation record in the Konkan-Kerala Basin: implications for the evolution of the Western Ghats and the Western Indian passive margin

The Konkan and Kerala Basins constitute a major depocentre for sediment from the onshore hinterland of Western India and as such provide a valuable record of the timing and magnitude of Cenozoic denudation along the continental margin. This paper presents an analysis of sedimentation in the Konkan-Kerala Basin, coupledwith a mass balance study, and numerical modelling of flexural responses to onshore denudational unloading and o¡shore sediment loading in order to test competing conceptual models for the development of high-elevation passive margins. The Konkan-Kerala Basin contains an estimated 109,000 km&lt;sup&gt;3&lt;/sup&gt;; of Cenozoic clastic sediment, a volume difficult to reconcile with the denudation of a downwarped rift flank onshore, and more consistent with denudation of an elevated rift flank. We infer from modelling of the isostatic response of the lithosphere to sediment loading offshore and denudation onshore that flexure is an important component in the development of the Western Indian Margin.There is evidence for two major pulses in sedimentation: an early phase in the Palaeocene, and a second beginning in the Pliocene. The Palaeocene increase in sedimentation can be interpreted in terms of a denudational response to the rifting between India and the Seychelles, whereas the mechanism responsible for the Pliocene pulse is more enigmatic

Pore timing:the evolutionary origins of the nucleus and nuclear pore complex

The name “eukaryote” is derived from Greek, meaning “true kernel”, and describes the domain of organisms whose cells have a nucleus. The nucleus is thus the defining feature of eukaryotes and distinguishes them from prokaryotes (Archaea and Bacteria), whose cells lack nuclei. Despite this, we discuss the intriguing possibility that organisms on the path from the first eukaryotic common ancestor to the last common ancestor of all eukaryotes did not possess a nucleus at all—at least not in a form we would recognize today—and that the nucleus in fact arrived relatively late in the evolution of eukaryotes. The clues to this alternative evolutionary path lie, most of all, in recent discoveries concerning the structure of the nuclear pore complex. We discuss the evidence for such a possibility and how this impacts our views of eukaryote origins and how eukaryotes have diversified subsequent to their last common ancestor

Mutant Versions of the S. cerevisiae Transcription Elongation Factor Spt16 Define Regions of Spt16 That Functionally Interact with Histone H3

In eukaryotic cells, the highly conserved FACT (FAcilitates Chromatin Transcription) complex plays important roles in several chromatin-based processes including transcription initiation and elongation. During transcription elongation, the FACT complex interacts directly with nucleosomes to facilitate histone removal upon RNA polymerase II (Pol II) passage and assists in the reconstitution of nucleosomes following Pol II passage. Although the contribution of the FACT complex to the process of transcription elongation has been well established, the mechanisms that govern interactions between FACT and chromatin still remain to be fully elucidated. Using the budding yeast Saccharomyces cerevisiae as a model system, we provide evidence that the middle domain of the FACT subunit Spt16 – the Spt16-M domain – is involved in functional interactions with histone H3. Our results show that the Spt16-M domain plays a role in the prevention of cryptic intragenic transcription during transcription elongation and also suggest that the Spt16-M domain has a function in regulating dissociation of Spt16 from chromatin at the end of the transcription process. We also provide evidence for a role for the extreme carboxy terminus of Spt16 in functional interactions with histone H3. Taken together, our studies point to previously undescribed roles for the Spt16 M-domain and extreme carboxy terminus in regulating interactions between Spt16 and chromatin during the process of transcription elongation

FACT, the Bur Kinase Pathway, and the Histone Co-Repressor HirC Have Overlapping Nucleosome-Related Roles in Yeast Transcription Elongation

Gene transcription is constrained by the nucleosomal nature of chromosomal DNA. This nucleosomal barrier is modulated by FACT, a conserved histone-binding heterodimer. FACT mediates transcription-linked nucleosome disassembly and also nucleosome reassembly in the wake of the RNA polymerase II transcription complex, and in this way maintains the repression of ‘cryptic’ promoters found within some genes. Here we focus on a novel mutant version of the yeast FACT subunit Spt16 that supplies essential Spt16 activities but impairs transcription-linked nucleosome reassembly in dominant fashion. This Spt16 mutant protein also has genetic effects that are recessive, which we used to show that certain Spt16 activities collaborate with histone acetylation and the activities of a Bur-kinase/Spt4–Spt5/Paf1C pathway that facilitate transcription elongation. These collaborating activities were opposed by the actions of Rpd3S, a histone deacetylase that restores a repressive chromatin environment in a transcription-linked manner. Spt16 activity paralleling that of HirC, a co-repressor of histone gene expression, was also found to be opposed by Rpd3S. Our findings suggest that Spt16, the Bur/Spt4–Spt5/Paf1C pathway, and normal histone abundance and/or stoichiometry, in mutually cooperative fashion, facilitate nucleosome disassembly during transcription elongation. The recessive nature of these effects of the mutant Spt16 protein on transcription-linked nucleosome disassembly, contrasted to its dominant negative effect on transcription-linked nucleosome reassembly, indicate that mutant FACT harbouring the mutant Spt16 protein competes poorly with normal FACT at the stage of transcription-linked nucleosome disassembly, but effectively with normal FACT for transcription-linked nucleosome reassembly. This functional difference is consistent with the idea that FACT association with the transcription elongation complex depends on nucleosome disassembly, and that the same FACT molecule that associates with an elongation complex through nucleosome disassembly is retained for reassembly of the same nucleosome