394 research outputs found
Critical Casimir effect in classical binary liquid mixtures
If a fluctuating medium is confined, the ensuing perturbation of its
fluctuation spectrum generates Casimir-like effective forces acting on its
confining surfaces. Near a continuous phase transition of such a medium the
corresponding order parameter fluctuations occur on all length scales and
therefore close to the critical point this effect acquires a universal
character, i.e., to a large extent it is independent of the microscopic details
of the actual system. Accordingly it can be calculated theoretically by
studying suitable representative model systems.
We report on the direct measurement of critical Casimir forces by total
internal reflection microscopy (TIRM), with femto-Newton resolution. The
corresponding potentials are determined for individual colloidal particles
floating above a substrate under the action of the critical thermal noise in
the solvent medium, constituted by a binary liquid mixture of water and
2,6-lutidine near its lower consolute point. Depending on the relative
adsorption preferences of the colloid and substrate surfaces with respect to
the two components of the binary liquid mixture, we observe that, upon
approaching the critical point of the solvent, attractive or repulsive forces
emerge and supersede those prevailing away from it. Based on the knowledge of
the critical Casimir forces acting in film geometries within the Ising
universality class and with equal or opposing boundary conditions, we provide
the corresponding theoretical predictions for the sphere-planar wall geometry
of the experiment. The experimental data for the effective potential can be
interpreted consistently in terms of these predictions and a remarkable
quantitative agreement is observed.Comment: 30 pages, 17 figure
Critical Casimir forces and adsorption profiles in the presence of a chemically structured substrate
Motivated by recent experiments with confined binary liquid mixtures near
demixing, we study the universal critical properties of a system, which belongs
to the Ising universality class, in the film geometry. We employ periodic
boundary conditions in the two lateral directions and fixed boundary conditions
on the two confining surfaces, such that one of them has a spatially
homogeneous adsorption preference while the other one exhibits a laterally
alternating adsorption preference, resembling locally a single chemical step.
By means of Monte Carlo simulations of an improved Hamiltonian, so that the
leading scaling corrections are suppressed, numerical integration, and
finite-size scaling analysis we determine the critical Casimir force and its
universal scaling function for various values of the aspect ratio of the film.
In the limit of a vanishing aspect ratio the critical Casimir force of this
system reduces to the mean value of the critical Casimir force for laterally
homogeneous ++ and +- boundary conditions, corresponding to the surface spins
on the two surfaces being fixed to equal and opposite values, respectively. We
show that the universal scaling function of the critical Casimir force for
small but finite aspect ratios displays a linear dependence on the aspect ratio
which is solely due to the presence of the lateral inhomogeneity. We also
analyze the order-parameter profiles at criticality and their universal scaling
function which allows us to probe theoretical predictions and to compare with
experimental data.Comment: revised version, section 5.2 expanded; 53 pages, 12 figures, iopart
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Fertility, Living Arrangements, Care and Mobility
There are four main interconnecting themes around which the contributions in this book are based. This introductory chapter aims to establish the broad context for the chapters that follow by discussing each of the themes. It does so by setting these themes within the overarching demographic challenge of the twenty-first century – demographic ageing. Each chapter is introduced in the context of the specific theme to which it primarily relates and there is a summary of the data sets used by the contributors to illustrate the wide range of cross-sectional and longitudinal data analysed
Microscopic examination of bone marrow aspirates in malignant disorders of haematopoiesis—a comparison of two slide preparation techniques
It is mandatory to perform microscopic examinations of bone marrow aspirates during the diagnosis of many neoplastic haematopoiesis disorders. In 2008, The International Committee for Standardization in Hematology recommended the use of two types of slides for the microscopic evaluation of bone marrow: wedge-spread film and crush film slides. Because these techniques have not yet been compared, we performed such a comparison. Routine bone marrow samples from 250 patients diagnosed due to different neoplastic haematological disorders were evaluated. The major differences between the two compared techniques were identified in 13 patients with non-Hodgkin’s lymphoma, seven patients with systemic mastocytosis and 11 patients with acute leukaemias or myelodysplastic syndromes or chronic myelomonocytic leukaemia. Differences were noted also in many patients with multiple myeloma, but the clinical significance of these discrepancies was rather modest. The major causes of the differences observed seemed to be the dilution of marrow with blood cells and the focal growth of many neoplastic cells. We believe that the crush technique is more advantageous compared to the wedge-spread films. Therefore, we recommend the use of crush films as the primary method for establishing a diagnosis or for making therapeutic decisions based on the microscopic examination of bone marrow
Critical adsorption on curved objects
A systematic fieldtheoretic description of critical adsorption on curved
objects such as spherical or rodlike colloidal particles immersed in a fluid
near criticality is presented. The temperature dependence of the corresponding
order parameter profiles and of the excess adsorption are calculated
explicitly. Critical adsorption on elongated rods is substantially more
pronounced than on spherical particles. It turns out that, within the context
of critical phenomena in confined geometries, critical adsorption on a
microscopically thin `needle' represents a distinct universality class of its
own. Under favorable conditions the results are relevant for the flocculation
of colloidal particles.Comment: 52 pages, 10 figure
Functional Diversity and Structural Disorder in the Human Ubiquitination Pathway
The ubiquitin-proteasome system plays a central role in cellular regulation and protein quality control (PQC). The system is built as a pyramid of increasing complexity, with two E1 (ubiquitin activating), few dozen E2 (ubiquitin conjugating) and several hundred E3 (ubiquitin ligase) enzymes. By collecting and analyzing E3 sequences from the KEGG BRITE database and literature, we assembled a coherent dataset of 563 human E3s and analyzed their various physical features. We found an increase in structural disorder of the system with multiple disorder predictors (IUPred - E1: 5.97%, E2: 17.74%, E3: 20.03%). E3s that can bind E2 and substrate simultaneously (single subunit E3, ssE3) have significantly higher disorder (22.98%) than E3s in which E2 binding (multi RING-finger, mRF, 0.62%), scaffolding (6.01%) and substrate binding (adaptor/substrate recognition subunits, 17.33%) functions are separated. In ssE3s, the disorder was localized in the substrate/adaptor binding domains, whereas the E2-binding RING/HECT-domains were structured. To demonstrate the involvement of disorder in E3 function, we applied normal modes and molecular dynamics analyses to show how a disordered and highly flexible linker in human CBL (an E3 that acts as a regulator of several tyrosine kinase-mediated signalling pathways) facilitates long-range conformational changes bringing substrate and E2-binding domains towards each other and thus assisting in ubiquitin transfer. E3s with multiple interaction partners (as evidenced by data in STRING) also possess elevated levels of disorder (hubs, 22.90% vs. non-hubs, 18.36%). Furthermore, a search in PDB uncovered 21 distinct human E3 interactions, in 7 of which the disordered region of E3s undergoes induced folding (or mutual induced folding) in the presence of the partner. In conclusion, our data highlights the primary role of structural disorder in the functions of E3 ligases that manifests itself in the substrate/adaptor binding functions as well as the mechanism of ubiquitin transfer by long-range conformational transitions. © 2013 Bhowmick et al
Has the Price of Motherhood Declined Over Time? A Cross-Cohort Comparison of the Motherhood Wage Penalty
Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/73089/1/j.1741-3737.2003.00597.x.pd
ATPase Subdomain IA Is a Mediator of Interdomain Allostery in Hsp70 Molecular Chaperones
The versatile functions of the heat shock protein 70 (Hsp70) family of molecular chaperones rely on allosteric interactions between their nucleotide-binding and substrate-binding domains, NBD and SBD. Understanding the mechanism of interdomain allostery is essential to rational design of Hsp70 modulators. Yet, despite significant progress in recent years, how the two Hsp70 domains regulate each other's activity remains elusive. Covariance data from experiments and computations emerged in recent years as valuable sources of information towards gaining insights into the molecular events that mediate allostery. In the present study, conservation and covariance properties derived from both sequence and structural dynamics data are integrated with results from Perturbation Response Scanning and in vivo functional assays, so as to establish the dynamical basis of interdomain signal transduction in Hsp70s. Our study highlights the critical roles of SBD residues D481 and T417 in mediating the coupled motions of the two domains, as well as that of G506 in enabling the movements of the α-helical lid with respect to the β-sandwich. It also draws attention to the distinctive role of the NBD subdomains: Subdomain IA acts as a key mediator of signal transduction between the ATP- and substrate-binding sites, this function being achieved by a cascade of interactions predominantly involving conserved residues such as V139, D148, R167 and K155. Subdomain IIA, on the other hand, is distinguished by strong coevolutionary signals (with the SBD) exhibited by a series of residues (D211, E217, L219, T383) implicated in DnaJ recognition. The occurrence of coevolving residues at the DnaJ recognition region parallels the behavior recently observed at the nucleotide-exchange-factor recognition region of subdomain IIB. These findings suggest that Hsp70 tends to adapt to co-chaperone recognition and activity via coevolving residues, whereas interdomain allostery, critical to chaperoning, is robustly enabled by conserved interactions. © 2014 General et al
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