Planar Random Networks with Flexible Fibers

The transition in random fiber networks from two-dimensional to asymptotically three-dimensional planar structure with increasing coverage c¯ (mean fiber length per unit area) is studied with a deposition model. Network geometry depends on the scale-free product of fiber length and c¯ at low c¯, and on another scale-free product of flexibility and the width-to-thickness ratio of fibers at high c¯. The structure becomes three-dimensional or decouples from the substrate faster when fibers are stiffer. Roughness of the free surface decreases with increasing fiber flexibility.Peer reviewe

Decoherence of flux qubits due to 1/f flux noise

We have investigated decoherence in Josephson-junction flux qubits. Based on the measurements of decoherence at various bias conditions, we discriminate contributions of different noise sources. In particular, we present a Gaussian decay function of the echo signal as evidence of dephasing due to $1/f$ flux noise whose spectral density is evaluated to be about $(10^{-6} \Phi_0)^2$/Hz at 1 Hz. We also demonstrate that at an optimal bias condition where the noise sources are well decoupled the coherence observed in the echo measurement is mainly limited by energy relaxation of the qubit.Comment: 4 pages, error in Fig.4 corrected, to appear in PR

Porous structure of thick fiber webs

The bulk properties and stochastic pore geometry of finite-thickness fiber webs are studied using a realistic model for the sedimentation of flexible fibers [K. J. Niskanen and M. J. Alava, Phys. Rev. Lett. 73, 3475 (1994)]. The resulting web structure is controlled by a dimensionless number F=Tfwf/tf, where Tf is fiber flexibility, wf fiber width, and tf fiber thickness. The fiber length (≫wf,tf) is irrelevant. With increasing coverage c̄, a crossover occurs at c̄=c0≈1+2F from a vacancy-controlled two-dimensional (2D) structure to a pore-controlled 3D structure. The 3D structures are isomorphic in that the pore dimensions are exponentially distributed, with the decay rate dependent only on F.Peer reviewe

Realization of Arbitrary Gates in Holonomic Quantum Computation

Among the many proposals for the realization of a quantum computer, holonomic quantum computation (HQC) is distinguished from the rest in that it is geometrical in nature and thus expected to be robust against decoherence. Here we analyze the realization of various quantum gates by solving the inverse problem: Given a unitary matrix, we develop a formalism by which we find loops in the parameter space generating this matrix as a holonomy. We demonstrate for the first time that such a one-qubit gate as the Hadamard gate and such two-qubit gates as the CNOT gate, the SWAP gate and the discrete Fourier transformation can be obtained with a single loop.Comment: 8 pages, 6 figure

Interqubit coupling mediated by a high-excitation-energy quantum object

We consider a system composed of two qubits and a high-excitation-energy quantum object used to mediate coupling between the qubits. We treat the entire system quantum mechanically and analyze the properties of the eigenvalues and eigenstates of the total Hamiltonian. After reproducing well-known results concerning the leading term in the mediated coupling, we obtain an expression for the residual coupling between the qubits in the off state. We also analyze the entanglement between the three objects, i.e. the two qubits and the coupler, in the eigenstates of the total Hamiltonian. Although we focus on the application of our results to the recently realized parametric-coupling scheme with two qubits, we also discuss extensions of our results to harmonic-oscillator couplers, couplers that are near resonance with the qubits and multi-qubit systems. In particular, we find that certain errors that are absent for a two-qubit system arise when dealing with multi-qubit systems.Comment: 15 pages (two-column

A novel genomic region on chromosome 11 associated with fearfulness in dogs

The complex phenotypic and genetic nature of anxieties hampers progress in unravelling their molecular etiologies. Dogs present extensive natural variation in fear and anxiety behaviour and could advance the understanding of the molecular background of behaviour due to their unique breeding history and genetic architecture. As dogs live as part of human families under constant care and monitoring, information from their behaviour and experiences are easily available. Here we have studied the genetic background of fearfulness in the Great Dane breed. Dogs were scored and categorised into cases and controls based on the results of the validated owner-completed behavioural survey. A genome-wide association study in a cohort of 124 dogs with and without socialisation as a covariate revealed a genome-wide significant locus on chromosome 11. Whole exome sequencing and whole genome sequencing revealed extensive regions of opposite homozygosity in the same locus on chromosome 11 between the cases and controls with interesting neuronal candidate genes such as MAPK9/JNK2, a known hippocampal regulator of anxiety. Further characterisation of the identified locus will pave the way for molecular understanding of fear in dogs and may provide a natural animal model for human anxieties.Peer reviewe

Two-body Pion Absorption on 3He^3He at Threshold

It is shown that a satisfactory explanation of the ratio of the rates of the reactions $^3He(\pi^-,nn)$ and $^3He(\pi^-,np)$ for stopped pions is obtained once the effect of the short range two-nucleon components of the axial charge operator for the nuclear system is taken into account. By employing realistic models for the nucleon-nucleon interaction in the construction of these components of the axial charge operator, the predicted ratios agree with the empirical value to within 10-20\%.Comment: 19, UHPHYDOR-94-

Detailed comparison of the pp -> \pi^+pn and pp -> \pi^+d reactions at 951 MeV

The positively charged pions produced in proton-proton collisions at a beam momentum of 1640 MeV/c were measured in the forward direction with a high resolution magnetic spectrograph. The missing mass distribution shows the bound state (deuteron) clearly separated from the $pn$ continuum. Despite the very good resolution, there is no evidence for any significant production of the $pn$ system in the spin-singlet state. However, the $\sigma(pp\to \pi^+pn)/\sigma(pp\to \pi^+d)$ cross section ratio is about twice as large as that predicted from $S$-wave final-state-interaction theory and it is suggested that this is due to $D$-state effects in the $pn$ system.Comment: 8 pages, 3 figure

BCOR modulates transcriptional activity of a subset of glucocorticoid receptor target genes involved in cell growth and mobility

Glucocorticoid (GC) receptor (GR) is a key transcription factor (TF) that regulates vital metabolic and antiinflammatory processes. We have identified BCL6 corepressor (BCOR) as a dexamethasone-stimulated interaction partner of GR. BCOR is a component of non-canonical polycomb repressor complex 1.1 (ncPCR1.1) and linked to different developmental disorders and cancers, but the role of BCOR in GC signaling is poorly characterized. Here, using ChIP-seq we show that, GC induces genome-wide redistribution of BCOR chromatin binding towards GR-occupied enhancers in HEK293 cells. As assessed by RNA-seq, depletion of BCOR altered the expression of hundreds of GC-regulated genes, especially the ones linked to TNF signaling, GR signaling and cell migration pathways. Biotinylation-based proximity mapping revealed that GR and BCOR share several interacting partners, including nuclear receptor corepressor NCOR1. ChIP-seq showed that the NCOR1 co-occurs with both BCOR and GR on a subset of enhancers upon GC treatment. Simultaneous depletion of BCOR and NCOR1 influenced GR target gene expression in a combinatorial and gene-specific manner. Finally, we show using live cell imaging that the depletion of BCOR together with NCOR1 markedly enhances cell migration. Collectively, our data suggest BCOR as an important gene and pathway selective coregulator of GR transcriptional activity.Peer reviewe