Transfer of autocollimator calibration for use with scanning gantry profilometers for accurate determination of surface slope and curvature of state of the art x ray mirrors

X ray optics, desired for beamlines at free electron laser and diffraction limited storage ring x ray light sources, must have almost perfect surfaces, capable of delivering light to experiments without significant degradation of brightness and coherence. To accurately characterize such optics at an optical metrology lab, two basic types of surface slope profilometers are used the long trace profilers LTPs and nanometer optical measuring NOM like angular deflectometers, based on electronic autocollimator AC ELCOMAT 3000. The inherent systematic errors of the instrument s optical sensors set the principle limit to their measuring performance. Where autocollimator of a NOM like profiler may be calibrated at a unique dedicated facility, this is for a particular configuration of distance, aperture size, and angular range that does not always match the exact use in a scanning measurement with the profiler. Here we discuss the developed methodology, experimental set up, and numerical methods of transferring the calibration of one reference AC to the scanning AC of the Optical Surface Measuring System OSMS , recently brought to operation at the ALS Xray Optics Laboratory. We show that precision calibration of the OSMS performed in three steps, allows us to provide high confidence and accuracy low spatial frequency metrology and not print into measurements the inherent systematic error of tool in use. With the examples of the OSMS measurements with a state of the art x ray aspherical mirror, available from one of the most advanced vendors of X ray optics, we demonstrate the high efficacy of the developed calibration procedure. The results of our work are important for obtaining high reliability data, needed for sophisticated numerical simulations of beamline performance and optimization of beamline usage of the optics. This work was supported by the U. S. Department of Energy under contract number DE AC02 05CH1123

Adaptive immune defense prevents Bartonella persistence upon trans-placental transmission

Vertical transmission of Bartonella infection has been reported for several mammalian species including mice and humans. Accordingly, it is commonly held that acquired immunological tolerance contributes critically to the high prevalence of Bartonellae in wild-ranging rodent populations. Here we studied an experimental model of Bartonella infection in mice to assess the impact of maternal and newborn immune defense on vertical transmission and bacterial persistence in the offspring, respectively. Congenital infection was frequently observed in B cell-deficient mothers but not in immunocompetent dams, which correlated with a rapid onset of an antibacterial antibody response in infected WT animals. Intriguingly, B cell-deficient offspring with congenital infection exhibited long-term bacteremia whereas B cell-sufficient offspring cleared bacteremia within a few weeks after birth. Clearance of congenital Bartonella infection resulted in immunity against bacterial rechallenge, with the animals mounting Bartonella-neutralizing antibody responses of normal magnitude. These observations reveal a key role for humoral immune defense by the mother and offspring in preventing and eliminating vertical transmission. Moreover, congenital Bartonella infection does not induce humoral immune tolerance but results in anti-bacterial immunity, questioning the contribution of neonatal tolerance to Bartonella prevalence in wild-ranging rodents

Coherent oscillations in a Cooper-pair box

This paper is devoted to an analysis of the experiment by Nakamura {\it et al.} (Nature {\bf 398}, 786 (1999)) on the quantum state control in Josephson junctions devices. By considering the relevant processes involved in the detection of the charge state of the box and a realistic description of the gate pulse we are able to analyze some aspects of the experiment (like the amplitude of the measurement current) in a quantitative way

A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer

The investigation of microbial proteins by mass spectrometry (metaproteomics) is a key technology for simultaneously assessing the taxonomic composition and the functionality of microbial communities in medical, environmental, and biotechnological applications. We present an improved metaproteomics workflow using an updated sample preparation and a new version of the MetaProteomeAnalyzer software for data analysis. High resolution by multidimensional separation (GeLC, MudPIT) was sacrificed to aim at fast analysis of a broad range of different samples in less than 24 h. The improved workflow generated at least two times as many protein identifications than our previous workflow, and a drastic increase of taxonomic and functional annotations. Improvements of all aspects of the workflow, particularly the speed, are first steps toward potential routine clinical diagnostics (i.e., fecal samples) and analysis of technical and environmental samples. The MetaProteomeAnalyzer is provided to the scientific community as a central remote server solution at www.mpa.ovgu.de.Peer Reviewe

Growth of nano dots on the grazing incidence mirror surface under FEL irradiation Analytic approach to modeling

Simple analytic equation is deduced to explain new physical phenomenon detected experimentally growth of nano dots 40 55 nm diameter, 8 13 nm height, 9.4 dots amp; 956;m2 surface density on the grazing incidence mirror surface under the three years irradiation by the free electron laser FLASH 5 45 nm wavelength, 3 degrees grazing incidence angle . The growth model is based on the assumption that the growth of nano dots is caused by polymerization of incoming hydrocarbon molecules under the action of incident photons directly or photoelectrons knocked out from a mirror surface. The key feature of our approach consists in that we take into account the radiation intensity variation nearby a mirror surface in an explicit form, because the polymerization probability is proportional to it. We demonstrate that the simple analytic approach allows to explain all phenomena observed in experiment and to predict new effects. In particular, we show that the nano dots growth depends crucially on the grazing angle of incoming beam and its intensity growth of nano dots is observed in the limited from above and below intervals of the grazing angle and the radiation intensity. Decrease in the grazing angle by 1 degree only from 3 to 2 degree may result in a strong suppression of nanodots growth and their total disappearing. Similarly, decrease in the radiation intensity by several times replacement of free electron laser by synchrotron results also in disappearing of nano dots growt

Identification of the; Bartonella; autotransporter CFA as a protective antigen and hypervariable target of neutralizing antibodies in mice

The bacterial genus; Bartonella; comprises numerous emerging pathogens that cause a broad spectrum of disease manifestations in humans. The targets and mechanisms of the anti-; Bartonella; immune defense are ill-defined and bacterial immune evasion strategies remain elusive. We found that experimentally infected mice resolved; Bartonella; infection by mounting antibody responses that neutralized the bacteria, preventing their attachment to erythrocytes and suppressing bacteremia independent of complement or Fc receptors.; Bartonella; -neutralizing antibody responses were rapidly induced and depended on CD40 signaling but not on affinity maturation. We cloned neutralizing monoclonal antibodies (mAbs) and by mass spectrometry identified the bacterial autotransporter CFA (CAMP-like factor autotransporter) as a neutralizing antibody target. Vaccination against CFA suppressed; Bartonella; bacteremia, validating CFA as a protective antigen. We mapped; Bartonella; -neutralizing mAb binding to a domain in CFA that we found is hypervariable in both human and mouse pathogenic strains, indicating mutational antibody evasion at the; Bartonella; subspecies level. These insights into; Bartonella; immunity and immune evasion provide a conceptual framework for vaccine development, identifying important challenges in this endeavor

Quantum algorithms for Josephson networks

We analyze possible implementations of quantum algorithms in a system of (macroscopic) Josephson charge qubits. System layout and parameters to realize the Deutsch algorithm with up to three qubits are provided. Special attention is paid to the necessity of entangled states in the various implementations. Further, we demonstrate explicitely that the gates to implement the Bernstein-Vazirani algorithm can be realized by using a system of uncoupled qubits

Organic carbon content determination in soils: challenges and opportunities of elemental analysis versus thermogravimetry

Sustainable soil management needs reliable and accurate monitoring of soil organic carbon (SOC) content. However, despite of the development of analytical techniques during last decades, the detection opportunities for short term and rather small changes in SOC induced by organic fertilization, organic amendments or land use changes are still limited with the available methods. This study aims to quantify the theoretical detection opportunities for changes in SOC content with elemental analysis (EA) as the standard method in comparing with thermogravimetry (TG) as an enhanced traditional approach derived from soil organic matter determination via mass losses on ignition. The carried out experiments consist of mixing soil samples from non-fertilized plots of three long-term agricultural experiments in Bad Lauchstaedt, Großbeeren and Muencheberg (silty loam, loamy sand and silty sand) with straw, farmyard manure, sheep faeces and charcoal in four quantities (3 t×ha-1, 20 t×ha-1, 60 t×ha-1 and 180 t×ha‑1fresh matter) under laboratory conditions.The quantities were based on fresh matter application in agricultural practice accepting different amounts of added organic carbon. The results confirm EA as a method of higher reliability and accuracy for carbon content determination. TG allows to distinguish the different types of added amendments with high sensitivity. This was achieved by using newly developed evaluation algorithms for the thermal decay dynamics. We conclude from these results that TG cannot substitute EA to determine organic carbon on a routine base. However, TG could be a supplementary fingerprinting technique for the detection of added organic carbon to soils from organic fertilizers and to distinguish sources of geological or anthropogenic origin enabling a future assessment of soil organic carbon quality

Spatial stochastic resonance in 1D Ising systems

The 1D Ising model is analytically studied in a spatially periodic and oscillatory external magnetic field using the transfer-matrix method. For low enough magnetic field intensities the correlation between the external magnetic field and the response in magnetization presents a maximum for a given temperature. The phenomenon can be interpreted as a resonance phenomenon induced by the stochastic heatbath. This novel "spatial stochastic resonance" has a different origin from the classical stochastic resonance phenomenon.Comment: REVTex, 5 pages, 3 figure