The application of time-series MODIS NDVI profiles for the acquisition of crop information across Afghanistan

We investigated and developed a prototype crop information system integrating 250 m Moderate Resolution Imaging Spectroradiometer (MODIS) normalized difference vegetation index (NDVI) data with other available remotely sensed imagery, field data, and knowledge as part of a wider project monitoring opium and cereal crops. NDVI profiles exhibited large geographical variations in timing, height, shape, and number of peaks, with characteristics determined by underlying crop mixes, growth cycles, and agricultural practices. MODIS pixels were typically bigger than the field sizes, but profiles were indicators of crop phenology as the growth stages of the main first-cycle crops (opium poppy and cereals) were in phase. Profiles were used to investigate crop rotations, areas of newly exploited agriculture, localized variation in land management, and environmental factors such as water availability and disease. Near-real-time tracking of the current years’ profile provided forecasts of crop growth stages, early warning of drought, and mapping of affected areas. Derived data products and bulletins provided timely crop information to the UK Government and other international stakeholders to assist the development of counter-narcotic policy, plan activity, and measure progress. Results show the potential for transferring these techniques to other agricultural systems

Effect of dietary protein, selenium and temperature humidity index on reproductive traits of male rabbits in a tropical environment

The study aimed to evaluate the effects of dietary protein and selenium supplementation and temperature humidity index (THI) on male rabbit reproductive traits. Fourty eight male New Zealand White rabbits (23 ± 1.4 weeks of age) weighing 2.8 ± 1.13kg, were randomly allocated to one of six isocaloric diets (n = 8 animals/ treatment) that differed in either protein content (14g/100g, 18g/100g and 22g/100g) or selenium content (0.4 and 0.7 mg Se/ kg diet). The experimental design was 3 x 2 factorial. The study ran from April 2012 to September 2012. Significant (P= 0.001) differences observed in semen pH levels (R2 = 0.80, P= 0.010), reaction time [(libido)(R2= 0.85, P= 0.006)] and the proportion of abnormal sperm (R2= 0.44, P= 0.089) as time advanced suggesting positive relation with the changes in environmental THI. There were significant (P= 0.001) interactions between dietary protein level and Se on testis characteristics which seem to improve in Se supplemented group as dietary protein increased. The levels of THI experienced in this study were not sufficiently high enough to result in more pronounced responses on reproductive performance. Therefore there were no adverse effects on the rabbits reproductive traits fed dietary supplements in the tropics

Survey and monitoring of opium poppy and wheat in Afghanistan: 2003-2009

An integrated application of remote-sensing technology was devised and applied in Afghanistan during 2003–2009 providing critical information on cereal and poppy cultivation and poppy eradication. The results influenced UK and international policy and counter-narcotics actions in Afghanistan

Matrix factorizations for quantum complete intersections

We introduce twisted matrix factorizations for quantum complete intersections of codimension two. For such an algebra, we show that in a given dimension, almost all the indecomposable modules with bounded minimal projective resolutions correspond to such matrix factorizations.Comment: 13 page

Four-Hundred-and-Ninety-Million-Year Record of Bacteriogenic Iron Oxide Precipitation at Sea-Floor Hydrothermal Vents

Fe oxide deposits are commonly found at hydrothermal vent sites at mid-ocean ridge and back-arc sea floor spreading centers, seamounts associated with these spreading centers, and intra-plate seamounts, and can cover extensive areas of the seafloor. These deposits can be attributed to several abiogenic processes and commonly contain micron-scale filamentous textures. Some filaments are cylindrical casts of Fe oxyhydroxides formed around bacterial cells and are thus unquestionably biogenic. The filaments have distinctive morphologies very like structures formed by neutrophilic Fe oxidizing bacteria. It is becoming increasingly apparent that Fe oxidizing bacteria have a significant role in the formation of Fe oxide deposits at marine hydrothermal vents. The presence of Fe oxide filaments in Fe oxides is thus of great potential as a biomarker for Fe oxidizing bacteria in modern and ancient marine hydrothermal vent deposits. The ancient analogues of modern deep-sea hydrothermal Fe oxide deposits are jaspers. A number of jaspers, ranging in age from the early Ordovician to late Eocene, contain abundant Fe oxide filamentous textures with a wide variety of morphologies. Some of these filaments are like structures formed by modern Fe oxidizing bacteria. Together with new data from the modern TAG site, we show that there is direct evidence for bacteriogenic Fe oxide precipitation at marine hydrothermal vent sites for at least the last 490 Ma of the Phanerozoic

Effects of short-term treatment with atorvastatin in smokers with asthma - a randomized controlled trial

<b>Background</b> The immune modulating properties of statins may benefit smokers with asthma. We tested the hypothesis that short-term treatment with atorvastatin improves lung function or indices of asthma control in smokers with asthma.<p></p> <b>Methods</b> Seventy one smokers with mild to moderate asthma were recruited to a randomized double-blind parallel group trial comparing treatment with atorvastatin (40 mg per day) versus placebo for 4 weeks. After 4 weeks treatment inhaled beclometasone (400 ug per day) was added to both treatment arms for a further 4 weeks. The primary outcome was morning peak expiratory flow after 4 weeks treatment. Secondary outcome measures included indices of asthma control and airway inflammation.<p></p> <b>Results</b> At 4 weeks, there was no improvement in the atorvastatin group compared to the placebo group in morning peak expiratory flow [-10.67 L/min, 95% CI -38.70 to 17.37, p=0.449], but there was an improvement with atorvastatin in asthma quality of life score [0.52, 95% CI 0.17 to 0.87 p=0.005]. There was no significant improvement with atorvastatin and inhaled beclometasone compared to inhaled beclometasone alone in outcome measures at 8 weeks.<p></p> <b>Conclusions</b> Short-term treatment with atorvastatin does not alter lung function but may improve asthma quality of life in smokers with mild to moderate asthma. Clinicaltrials.gov identifier: NCT0046382

Self-organized dynamics and the transition to turbulence of confined active nematics

We study how confinement transforms the chaotic dynamics of bulk microtubule-based active nematics into regular spatiotemporal patterns. For weak confinements, multiple continuously nucleating and annihilating topological defects self-organize into persistent circular flows of either handedness. Increasing confinement strength leads to the emergence of distinct dynamics, in which the slow periodic nucleation of topological defects at the boundary is superimposed onto a fast procession of a pair of defects. A defect pair migrates towards the confinement core over multiple rotation cycles, while the associated nematic director field evolves from a distinct double spiral towards a nearly circularly symmetric configuration. The collapse of the defect orbits is punctuated by another boundary-localized nucleation event, that sets up long-term doubly-periodic dynamics. Comparing experimental data to a theoretical model of an active nematic, reveals that theory captures the fast procession of a pair of $+\frac{1}{2}$ defects, but not the slow spiral transformation nor the periodic nucleation of defect pairs. Theory also fails to predict the emergence of circular flows in the weak confinement regime. The developed confinement methods are generalized to more complex geometries, providing a robust microfluidic platform for rationally engineering two-dimensional autonomous flows

Breaking axi-symmetry in stenotic flow lowers the critical transition Reynolds number

Flow through a sinuous stenosis with varying degrees of non-axisymmetric shape variations and at Reynolds number ranging from 250 to 750 is investigated using direct numerical simulation (DNS) and global linear stability analysis. At low Reynolds numbers (Re < 390), the flow is always steady and symmetric for an axisymmetric geometry. Two steady state solutions are obtained when the Reynolds number is increased: a symmetric steady state and an eccentric, non-axisymmetric steady state. Either one can be obtained in the DNS depending on the initial condition. A linear global stability analysis around the symmetric and non-axisymmetric steady state reveals that both flows are linearly stable for the same Reynolds number, showing that the first bifurcation from symmetry to antisymmetry is subcritical. When the Reynolds number is increased further, the symmetric state becomes linearly unstable to an eigenmode, which drives the flow towards the nonaxisymmetric state. The symmetric state remains steady up to Re = 713, while the non-axisymmetric state displays regimes of periodic oscillations for Re ≥ 417 and intermittency for Re & 525. Further, an offset of the stenosis throat is introduced through the eccentricity parameter E. When eccentricity is increased from zero to only 0.3% of the pipe diameter, the bifurcation Reynolds number decreases by more than 50%, showing that it is highly sensitive to non-axisymmetric shape variations. Based on the resulting bifurcation map and its dependency on E, we resolve the discrepancies between previous experimental and computational studies. We also present excellent agreement between our numerical results and previous experimental resultsThis is the author accepted manuscript. The final version is available from AIP via http://dx.doi.org/10.1063/1.493453

Non-normality and nonlinearity in thermoacoustic instabilities

Analysis of thermoacoustic instabilities were dominated by modal (eigenvalue) analysis for many decades. Recent progress in nonmodal stability analysis allows us to study the problem from a different perspective, by quantitatively describing the short-term behavior of disturbances. The short-term evolution has a bearing on subcritical transition to instability, known popularly as triggering instability in thermoacoustic parlance. We provide a review of the recent developments in the context of triggering instability. A tutorial for nonmodal stability analysis is provided. The applicability of the tools from nonmodal stability analysis are demonstrated with the help of a simple model of a Rjike tube. The article closes with a brief description of how to characterize bifurcations in thermoacoustic systems

Linear-model-based estimation in wall turbulence: Improved stochastic forcing and eddy viscosity terms

We use Navier–Stokes-based linear models for wall-bounded turbulent flows to estimate large-scale fluctuations at different wall-normal locations from their measurements at a single wall-normal location. In these models, we replace the nonlinear term by a combination of a stochastic forcing term and an eddy dissipation term. The stochastic forcing term plays a role in energy production by the large scales, and the eddy dissipation term plays a role in energy dissipation by the small scales. Based on the results in channel flow, we find that the models can estimate large-scale fluctuations with reasonable accuracy only when the stochastic forcing and eddy dissipation terms vary with wall distance and with the length scale of the fluctuations to be estimated. The dependence on the wall distance ensures that energy production and energy dissipation are not concentrated close to the wall but are evenly distributed across the near-wall and logarithmic regions. The dependence on the length scale of the fluctuations ensures that lower wavelength fluctuations are not excessively damped by the eddy dissipation term and hence that the dominant scales shift towards lower wavelengths towards the wall. This highlights that, on the one hand, energy extraction in wall turbulence is predominantly linear and thus physics-based linear models give reasonably accurate results. On the other hand, the absence of linearly unstable modes in wall turbulence means that the nonlinear term still plays an essential role in energy extraction and thus the modelled terms should include the observed wall distance and length scale dependencies of the nonlinear term.This work was supported by the National Natural Science Foundation of China (grant nos. 91752201, 12002147 and 12050410247), the Shenzhen Science and Technology Innovation Committee (KQTD20180411143441009), the Department of Science and Technology of Guangdong Province (grant nos. 2019B21203001 and 2020B1212030001) and the Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou (GML2019ZD0103). We acknowledge support from the Centers for Mechanical Engineering Research and Education at MIT and SUSTech, as well as from the Center for Computational Science and Engineering at SUSTech. AM and SJI are grateful for the financial support of the Australian Research Council