GadCap: A GADGET multispecies model for the Flemish Cap cod, redfish and shrimp.

Since late 1980s, the demersal community of Flemish Cap (NAFO area 3M) has experienced large variations (including the collapse) in the abundance and population structure of its main fishing resources: cod Gadus morhua, redfish Sebastes sp. and shrimp Pandalus borealis, with alternation in their dominant role in the ecosystem. GadCap is an EU project dealing with the development of a GADGET multispecies model for the Flemish Cap cod, redfish and shrimp, as part of the NAFO roadmap for the EAF. The effect of fishing, trophic interactions (including cannibalism) and water temperature in the dynamic of these three major fishing resources has been modeled. The results highlight the interdependent dynamic of these stocks, and reveals strong interactions between recruitment, fishing and predation (including cannibalism), with marked changes in their relative importance by species-age-length over time. The multispecies model shows that disregarding the species interactions would lead to serious underestimates of natural mortality, overestimations of the exploitable biomass, and highlights the need to move beyond single-species management in this highly coupled ecosystem. Preliminary estimates of total SSB and MSY, under different combinations of fishing mortality for all the three stocks, are also presented.Postprint0,000

Cellulose nanowhisker obtained from cotton rejected by textile industry

This study aimed to characterize cellulose nanowhiskers (NWs) extracted from discarded cotton fibers. The nanocellulose was characterized by dynamic light scattering, zeta potential, Scanning Transmission Electron Microscopy (STEM), Atomic force microscopy (AFM) and X-ray powder diffraction (XRD). The nanocrystals are characterized by a rod-like morphology with sizes between 100 nm and 300 nm. The acidic hydrolyses applied to the extract nanocrystals increased the crystallinity index from 72 to 86%. The average length and diameter obtained were 98.1±4.7 and 8.0±3.4 nm, respectively. The aspect ratio of the fibers, around 12.3, was lower than the values usually reported in the literature. The dynamic light scattering results were in accordance with the nano crystal dimensions showing an average size of 235 nm. Cellulose NWs obtained from cotton rejected by textile industry due to their abundance, low cost, high crystallinity, strength, low weight and biodegradability, are the ideal candidates for the processing of polymer nanocomposites

Low frequency of TERT promoter mutations in gastrointestinal stromal tumors (GISTs).

Somatic mutations in the promoter region of telomerase reverse transcriptase (TERT) gene, mainly at positions c. − 124 and c. − 146 bp, are frequent in several human cancers; yet its presence in gastrointestinal stromal tumor (GIST) has not been reported to date. Herein, we searched for the presence and clinicopathological association of TERT promoter mutations in genomic DNA from 130 bona fide GISTs. We found TERT promoter mutations in 3.8% (5/130) of GISTs. The c. − 124C4T mutation was the most common event, present in 2.3% (3/130), and the c. − 146C4T mutation in 1.5% (2/130) of GISTs. No significant association was observed between TERT promoter mutation and patient’s clinicopathological features. The present study establishes the low frequency (4%) of TERT promoter mutations in GISTs. Further studies are required to confirm our findings and to elucidate the hypothetical biological and clinical impact of TERT promoter mutation in GIST pathogenesis.This project was partially supported by Barretos Cancer Hospital internal research funds (PAIP) and CNPq Universal Grant (476192/2013-7) to RMR. NCC is a recipient of an FAPESP Doctoral Fellowship (2013/25787-3). Further funding from the project ‘Microenvironment, metabolism and cancer’ that was partially supported by Programa Operacional Regional do Norte (ON.2—O Novo Norte) under the Quadro de Referência Estratégico Nacional (QREN) and the Fundo Europeu de Desenvolvimento Regional (FEDER). IPATIMUP is an Associate Laboratory of the Portuguese Ministry of Science, Technology and Higher Education that is partially supported by the FCT

Engolo and Capoeira. From Ethnic to Diasporic Combat Games in the Southern Atlantic

This article provides a re-examination of the main Afrocentric narrative of capoeira origins, the engolo or ‘Zebra Dance’, in light of historical primary sources and new ethnographic evidence gathered during fieldwork in south-west Angola. By examining engolo’s bodily techniques, its socio-historical context and cultural meanings, the piece emphasises its insertion into a pastoral lifestyle and highlights the relatively narrow ethnic character of the practice in Angola. This analysis and the comparison with capoeira helps us to develop certain hypotheses about the formation, migration, and re-invention of diasporic combat games between southern Angola and coastal Brazil, and more broadly, to increase our understanding of how African cultures spread across the southern Atlantic

The era of reference genomes in conservation genomics

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics

The era of reference genomes in conservation genomics

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics

The era of reference genomes in conservation genomics

info:eu-repo/semantics/publishedVersio

How genomics can help biodiversity conservation

The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics.info:eu-repo/semantics/publishedVersio