11 research outputs found

    A de novo paradigm for male infertility

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    Genetics of Male Infertility Initiative (GEMINI) consortium: Donald F. Conrad, Liina Nagirnaja, Kenneth I. Aston, Douglas T. Carrell, James M. Hotaling, Timothy G. Jenkins, Rob McLachlan, Moira K. O’Bryan, Peter N. Schlegel, Michael L. Eisenberg, Jay I. Sandlow, Emily S. Jungheim, Kenan R. Omurtag, Alexandra M. Lopes, Susana Seixas, Filipa Carvalho, Susana Fernandes, Alberto Barros, João Gonçalves, Iris Caetano, Graça Pinto, Sónia Correia, Maris Laan, Margus Punab, Ewa Rajpert-De Meyts, Niels Jørgensen, Kristian Almstrup, Csilla G. Krausz & Keith A. Jarvi.De novo mutations are known to play a prominent role in sporadic disorders with reduced fitness. We hypothesize that de novo mutations play an important role in severe male infertility and explain a portion of the genetic causes of this understudied disorder. To test this hypothesis, we utilize trio-based exome sequencing in a cohort of 185 infertile males and their unaffected parents. Following a systematic analysis, 29 of 145 rare (MAF < 0.1%) protein-altering de novo mutations are classified as possibly causative of the male infertility phenotype. We observed a significant enrichment of loss-of-function de novo mutations in loss-of-function-intolerant genes (p-value = 1.00 × 10−5) in infertile men compared to controls. Additionally, we detected a significant increase in predicted pathogenic de novo missense mutations affecting missense-intolerant genes (p-value = 5.01 × 10−4) in contrast to predicted benign de novo mutations. One gene we identify, RBM5, is an essential regulator of male germ cell pre-mRNA splicing and has been previously implicated in male infertility in mice. In a follow-up study, 6 rare pathogenic missense mutations affecting this gene are observed in a cohort of 2,506 infertile patients, whilst we find no such mutations in a cohort of 5,784 fertile men (p-value = 0.03). Our results provide evidence for the role of de novo mutations in severe male infertility and point to new candidate genes affecting fertility.This project was funded by The Netherlands Organization for Scientific Research (918-15-667) to J.A.V. as well as an Investigator Award in Science from the Wellcome Trust (209451) to J.A.V. a grant from the Catherine van Tussenbroek Foundation to M.S.O. a grant from MERCK to R.S. a UUKi Rutherford Fund Fellowship awarded to B.J.H. and the German Research Foundation Clinical Research Unit “Male Germ Cells” (DFG, CRU326) to C.F. and F.T. This project was also supported in part by funding from the Australian National Health and Medical Research Council (APP1120356) to M.K.O.B., by grants from the National Institutes of Health of the United States of America (R01HD078641 to D.F.C. and K.I.A., P50HD096723 to D.F.C.) and from the Biotechnology and Biological Sciences Research Council (BB/S008039/1) to D.J.E.info:eu-repo/semantics/publishedVersio

    Tristeza parasitária bovina na região sul do Rio Grande do Sul: estudo retrospectivo de 1978-2005 Tick fever in southern Brazil: a retrospective study of 1978-2005

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    Foi realizado um estudo retrospectivo dos casos de tristeza parasitária bovina (TPB) ocorridos no sul do Rio Grande do Sul, área de influência do Laboratório Regional de Diagnóstico (LRD) da Faculdade de Veterinária da Universidade Federal de Pelotas entre 1978 e 2005. De um total de 4.884 materiais de bovinos provenientes de necropsias realizadas e órgãos ou sangue enviados ao laboratório 231 (4,7%) tiveram o diagnóstico de TPB. Desses 231 surtos foram resgatados os dados de 221 diagnósticos dos quais 91 (41,1%) foram causados por Babesia bovis, 11 (4,9%) por Babesia bigemina, e 65 (29,41%) por Anaplasma marginale. Em outros 33 (14,93%) surtos de babesiose não foi informada a espécie de Babesia e em 21 (9,5%) surtos foi detectada infecção mista por Babesia sp e A. marginale. Os índices gerais médios de morbidade, mortalidade e letalidade, resgatados em 149 dos 221 surtos da doença, foram de 11,17%, 6,81% e 70,04%, respectivamente. Verificou-se que, na região estudada, a maioria dos surtos ocorre durante os meses de verão e outono, e que os animais com um a três anos de idade são os mais afetados. Os sinais clínicos nos surtos caracterizaram-se por apatia, orelhas caídas, debilidade, febre, anorexia e emagrecimento. Os valores de hematócrito eram baixos. Hemoglobinúria foi frequentemente observada nos casos de babesiose. Sinais neurológicos estavam presentes nos casos de babesiose por B. bovis e se caracterizaram por transtornos da locomoção, tremores musculares, agressividade e quedas com movimentos de pedalagem. As lesões macroscópicas principais relatadas nos casos de babesiose foram esplenomegalia, hepatomegalia, fígado amarelo, hemoglobinúria, icterícia, hemorragias cardíacas e bile espessa. Congestão do córtex cerebral foi relatada nos casos de babesiose por B. bovis. Nesta região, com população de bovinos de aproximadamente 2.630.000 cabeças as perdas anuais por morte de bovinos pela enfermidade podem ser estimadas em 6.220 cabeças por ano representando um prejuízo econômico anual aproximado de R3.732.000,00evidenciandoanecessidadedemedidaspreventivasqueevitemaexposic\ca~odeanimaisdesprotegidosaosagentesdaTPB.<br>Aretrospectivestudyoftickfeverwasmade,whichoccurredfrom19782005insouthernRioGrandedoSulintheinfluenceareaoftheRegionalDiagnosticLaboratoryoftheFederalUniversityofPelotas.From4,884cattlespecimens,sentbypractitionersorwhichwerefromnecropsiesperformedattheDiagnosticLaboratory,231(4.73.732.000,00 evidenciando a necessidade de medidas preventivas que evitem a exposição de animais desprote-gidos aos agentes da TPB.<br>A retrospective study of tick fever was made, which occurred from 1978-2005 in southern Rio Grande do Sul in the influence area of the Regional Diagnostic Laboratory of the Federal University of Pelotas. From 4,884 cattle specimens, sent by practitioners or which were from necropsies performed at the Diagnostic Laboratory, 231 (4.7%) were diagnosed as tick fever. Data from 221 of those outbreaks were analyzed. Ninety one (41.1%) outbreaks were caused by Babesia bovis, 11 (4.9%) by Babesia bigemina, and 65 (29.41%) by Anaplasma marginale. In other 33 (14.93%) outbreaks of babesiosis there is no information if the disease was caused by B. bovis or B. bigemina, and 21 (9.5%) outbreaks were caused by mixed infection of A. marginale and B. bovis or B. bigemina. Mean morbidity, mortality, and letality rates in 149 outbreaks were 11.17%, 6.81%, and 70.04%, respectively. Most outbreaks occurred during summer (January-March) and autumn (April-June), mainly in 1 to 3-year-old cattle. Clinical signs were depression, weakness, fallen ears, fever, and weight loss. Low packed cell volume values were always found. Hemoglobinury was observed in babesiosis. Neurological signs characterized by gait alterations, muscular tremors, aggressiveness and falling down with tonic and clonic convulsions were observed in babesiosis by B. bovis. The main gross lesions were anemia, jaundice, splenomegaly, hepatomegaly, yellow liver and cardiac hemorrhages. Hemoglobinury was observed in babesiosis, and congestion of the cerebral cortex in babesiosis by B. bovis. It is concluded that B. bovis is the main agent causing thick fever in southern Rio Grande do Sul. In that region with a cattle population of 2,630,000 heads the annual losses due to tick fever can be estimated in 6,220 cattle or US 1,623,000.00. Preventive measures to diminish tick fever losses in the region are necessary

    Determinantes da demanda brasileira por importação de arroz do Mercosul

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    Desde meados da década de 1990, o arroz é um dos principais produtos agrícolas importados pelo Brasil, principalmente do Uruguai e da Argentina, o que frequentemente gera questionamentos dos orizicultores brasileiros. O objetivo deste artigo é analisar os determinantes das importações brasileiras deste cereal, e para tanto, apresenta-se um modelo econômico visando analisar esta relação comercial no Mercosul, assumindo que as importações brasileiras de arroz são resultantes de um excesso de demanda doméstica pelo cereal. Utiliza-se um Modelo Autorregressivo Vetorial - VAR estrutural. Os resultados mostram uma forte relação do volume importado com o preço doméstico do arroz e com a taxa de câmbio. Verifica-se uma significativa participação do preço de importação na explicação do preço doméstico. A quantidade importada de arroz responde positivamente a um choque positivo no preço doméstico e negativamente a choques positivos no preço de importação e na taxa de câmbio. Verifica-se uma relação de bicausalidade entre o preço doméstico e o preço de importação de arroz. Uma das principais conclusões é que a demanda por importação reage imediatamente a choques no preço doméstico e taxa de câmbio, e posteriormente, a choques no preço de importação, sugerindo dificuldades em substituir imediatamente o volume importado no mercado doméstico.<br>Since the middle of the 90's, rice has been one of the main agricultural products imported by Brazil, particularly from Uruguay and Argentina, which very often raises concerns to Brazilian rice producers. This paper aims to analyze the factors that determine the Brazilian rice imports, and therefore proposes an economic model to examine these trade flows in Mercosur, assuming that the Brazilian rice imports results from a domestic demand surplus. An econometric model Vector Auto-regressive (structural VAR) is applied. Results show a strong relationship among rice imports and domestic rice prices, as well as the exchange rate. A significant effect of import prices over domestic prices has been verified. The quantity of rice imports relates positively to an increase of domestic prices and negatively to an increase of import prices, as well as increases in the exchange rate. A bicausality relationship is verified between domestic and import prices for rice. One of the major conclusions is that Brazilian rice imports answer immediately to changes in domestic prices and exchange rate and react one quarter later to changes in import prices suggesting a delay over rice importers to substitute imports by the domestic rice

    Desempenho silvicultural de cinco espécies florestais na Amazônia central brasileira

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    Planting of forest species of timber interest helps to reduce the deforestation pressure on the Amazon forest, promotes sustainable development of the producing region and generates ecological benefits. The objective of this work was to evaluate the survival rate and growth of four native (Swietenia macrophylla, Parkia decussata, Dipteryx odorata and Jacaranda copaia) and one exotic (Acacia mangium) species in monospecific plantations (spacing of 2 x 2 m) established on areas previously used for grazing, in Itacoatiara, State of Amazonas, Brazil. When the trees were four years old, we collected biometric data [height at 1.30 m (DBH, cm), crown projection area (CPA, m2), total height (Ht, m), commercial cylinder volume (Vcyl, m3 ha-1)], and qualitative data from visual diagnosis [survival rate (S, %), nutritional status (NS, G = good, D = deficient, %), and phytosanitary status (PS, S = satisfactory, N = non-satisfactory, %)]. Three plots of 128 m2, with 32 plants each, were evaluated for each species. Jacaranda copaia, followed by Dipteryx odorata and Parkia decussata, were the recommended species for planting in areas with edaphoclimatic conditions similar to those of the present work, due to their better performance according to most of the variables.Plantios de espécies florestais de interesse madeireiro contribuem para diminuir a pressão sobre a floresta amazônica, proporcionam o desenvolvimento sustentável na região e geram benefícios ecológicos. Este estudo objetivou avaliar a sobrevivência e o crescimento de quatro espécies nativas (Swietenia macrophylla, Parkia decussata, Dipteryx odorata e Jacaranda copaia) e uma exótica (Acacia mangium), em plantios monoespecíficos (espaçamento de 2 x 2 m) estabelecidos em áreas anteriormente ocupadas por pastagem, em Itacoatiara, Amazonas. Aos quatro anos de idade, foram obtidos dados biométricos [diâmetro à altura de 1,30 m do solo (DBH, cm), área de projeção de copa (CPA, m2), altura total (Ht, m), volume comercial do cilindro (Vcyl, m3 ha-1)], e dados qualitativos obtidos por diagnose visual [taxa de sobrevivência (S; %), estado nutricional (NS, G: bom; D: deficiente; %) e estado fitossanitário (PS, S: satisfatório; NS: não-satisfatório; %). Para cada espécie considerou-se três parcelas de 128 m2, cada uma com 32 plantas. Jacaranda copaia, seguida de Dipteryx odorata e Parkia decussata, foram as espécies mais recomendadas para o plantio em áreas com condições edafoclimáticas semelhantes às do presente trabalho, devido ao seu melhor desempenho para a maioria das variáveis

    Brazilian Flora 2020: Leveraging the power of a collaborative scientific network

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    International audienceThe shortage of reliable primary taxonomic data limits the description of biological taxa and the understanding of biodiversity patterns and processes, complicating biogeographical, ecological, and evolutionary studies. This deficit creates a significant taxonomic impediment to biodiversity research and conservation planning. The taxonomic impediment and the biodiversity crisis are widely recognized, highlighting the urgent need for reliable taxonomic data. Over the past decade, numerous countries worldwide have devoted considerable effort to Target 1 of the Global Strategy for Plant Conservation (GSPC), which called for the preparation of a working list of all known plant species by 2010 and an online world Flora by 2020. Brazil is a megadiverse country, home to more of the world's known plant species than any other country. Despite that, Flora Brasiliensis, concluded in 1906, was the last comprehensive treatment of the Brazilian flora. The lack of accurate estimates of the number of species of algae, fungi, and plants occurring in Brazil contributes to the prevailing taxonomic impediment and delays progress towards the GSPC targets. Over the past 12 years, a legion of taxonomists motivated to meet Target 1 of the GSPC, worked together to gather and integrate knowledge on the algal, plant, and fungal diversity of Brazil. Overall, a team of about 980 taxonomists joined efforts in a highly collaborative project that used cybertaxonomy to prepare an updated Flora of Brazil, showing the power of scientific collaboration to reach ambitious goals. This paper presents an overview of the Brazilian Flora 2020 and provides taxonomic and spatial updates on the algae, fungi, and plants found in one of the world's most biodiverse countries. We further identify collection gaps and summarize future goals that extend beyond 2020. Our results show that Brazil is home to 46,975 native species of algae, fungi, and plants, of which 19,669 are endemic to the country. The data compiled to date suggests that the Atlantic Rainforest might be the most diverse Brazilian domain for all plant groups except gymnosperms, which are most diverse in the Amazon. However, scientific knowledge of Brazilian diversity is still unequally distributed, with the Atlantic Rainforest and the Cerrado being the most intensively sampled and studied biomes in the country. In times of “scientific reductionism”, with botanical and mycological sciences suffering pervasive depreciation in recent decades, the first online Flora of Brazil 2020 significantly enhanced the quality and quantity of taxonomic data available for algae, fungi, and plants from Brazil. This project also made all the information freely available online, providing a firm foundation for future research and for the management, conservation, and sustainable use of the Brazilian funga and flora

    Global variation in postoperative mortality and complications after cancer surgery: a multicentre, prospective cohort study in 82 countries

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    © 2021 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY-NC-ND 4.0 licenseBackground: 80% of individuals with cancer will require a surgical procedure, yet little comparative data exist on early outcomes in low-income and middle-income countries (LMICs). We compared postoperative outcomes in breast, colorectal, and gastric cancer surgery in hospitals worldwide, focusing on the effect of disease stage and complications on postoperative mortality. Methods: This was a multicentre, international prospective cohort study of consecutive adult patients undergoing surgery for primary breast, colorectal, or gastric cancer requiring a skin incision done under general or neuraxial anaesthesia. The primary outcome was death or major complication within 30 days of surgery. Multilevel logistic regression determined relationships within three-level nested models of patients within hospitals and countries. Hospital-level infrastructure effects were explored with three-way mediation analyses. This study was registered with ClinicalTrials.gov, NCT03471494. Findings: Between April 1, 2018, and Jan 31, 2019, we enrolled 15 958 patients from 428 hospitals in 82 countries (high income 9106 patients, 31 countries; upper-middle income 2721 patients, 23 countries; or lower-middle income 4131 patients, 28 countries). Patients in LMICs presented with more advanced disease compared with patients in high-income countries. 30-day mortality was higher for gastric cancer in low-income or lower-middle-income countries (adjusted odds ratio 3·72, 95% CI 1·70–8·16) and for colorectal cancer in low-income or lower-middle-income countries (4·59, 2·39–8·80) and upper-middle-income countries (2·06, 1·11–3·83). No difference in 30-day mortality was seen in breast cancer. The proportion of patients who died after a major complication was greatest in low-income or lower-middle-income countries (6·15, 3·26–11·59) and upper-middle-income countries (3·89, 2·08–7·29). Postoperative death after complications was partly explained by patient factors (60%) and partly by hospital or country (40%). The absence of consistently available postoperative care facilities was associated with seven to 10 more deaths per 100 major complications in LMICs. Cancer stage alone explained little of the early variation in mortality or postoperative complications. Interpretation: Higher levels of mortality after cancer surgery in LMICs was not fully explained by later presentation of disease. The capacity to rescue patients from surgical complications is a tangible opportunity for meaningful intervention. Early death after cancer surgery might be reduced by policies focusing on strengthening perioperative care systems to detect and intervene in common complications. Funding: National Institute for Health Research Global Health Research Unit
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