Eukaryotic Organisms in Proterozoic Oceans

The geological record of protists begins well before the Ediacaran and Cambrian diversification of animals, but the antiquity of that history, its reliability as a chronicle of evolution and the causal inferences that can be drawn from it remain subjects of debate. Well-preserved protists are known from a relatively small number of Proterozoic formations, but taphonomic considerations suggest that they capture at least broad aspects of early eukaryotic evolution. A modest diversity of problematic, possibly stem group protists occurs in ca 1800–1300 Myr old rocks. 1300–720 Myr fossils document the divergence of major eukaryotic clades, but only with the Ediacaran–Cambrian radiation of animals did diversity increase within most clades with fossilizable members. While taxonomic placement of many Proterozoic eukaryotes may be arguable, the presence of characters used for that placement is not. Focus on character evolution permits inferences about the innovations in cell biology and development that underpin the taxonomic and morphological diversification of eukaryotic organisms.Organismic and Evolutionary Biolog

Root hairs enable high transpiration rates in drying soils

What processes facilitate the ability of roots to take up water from the soil? Are root hairs advantageous for water uptake? Despite the well documented role of root hairs in phosphate uptake, their role in water extraction is controversial and the experimental data contradictory. We proposed a novel experimental method to address this question. We grew barley (Hordeum vulgare L. cv. Pallas) and its root-hairless mutant in a pressure chamber whereby the transpiration rate could be varied while monitoring the suction in the xylem. We monitored xylem water potential as function of different transpiration rate during a drying cycle. The relationship between transpiration rate and xylem suction linearly increased in wet soils and did not differ between genotypes. The slope of this increase was equal to the plant hydraulic resistance. When the soil dried the xylem water suction rapidly increased, particularly at high transpiration rates. The root-hairless mutant showed a more marked increase in the xylem suction, indicative of a lower capacity to take up water. Interestingly, the high rise in xylem suction at high transpiration rates did not quickly decrease as the transpiration rate was reduced. To quantitatively understand the relationship between transpiration rate and xylem suction and the role of root hairs, we employed a 3D root architectural model coupled with water flow in soils. The model was parametrized based on measured root architecture and soil hydraulic properties. The role of the root hairs was simulated by extending the root radius in presence of root hairs. This implicitly simulates the ability of root hairs to take up water from their tips, potential softening the drops in water potential across the rhizosphere. The simulations predicted that that as the soil dries a bigger drop in water potential develop around the roots of the root-hairless mutant. Extension of the root radius by 0.7 mm (to simulate the uptake of root hairs) reduced the drop in water potential around the roots and softened the decrease in the xylem water potential, particularly at high transpiration rates. We conclude that the root-soil interface plays a key role in root water uptake and that root hairs reduce the gradient in water potential around the roots and enable plants to sustain high transpiration rates in drying soils

Coupled root water and solute uptake - a functional structural model

Understanding the distribution and fate of solutes in the soil-plant continuum is of interest for regulatory authorities, customers and producers. For example pesticide legalization requires certain modelling and experimental studies before the substance can be released on the market. The modelling approach used in these procedures, however, does not hold detailed information about the fate of the solute in the plant root system, but treats the root system only as a linear sink term. Uptake is determined as fraction of transpiration of the concentration in the dissolved phase. With an increasing availability of more detailed modelling approaches within the last years, we focus on a more comprehensive description of pesticide uptake by plant roots. R-SWMS is a three dimensional model for water movement in soil and plant roots (1). It also includes solute transport within the roots, which is realized as a particle tracking algorithm (2). We coupled this model to Partrace, another particle tracking algorithm that solves the convection-dispersion-equation in the soil. Active or passive solute transport across the root membrane is possible. While active transport, namely Michaelis-Menten kinetics, requires energy input from the plant, passive transport can be either driven by advective water uptake and/or by the local concentration gradient between root and soil. Root membrane conductance is determined by the lipophilic properties of the solute. Within the root system solutes are transported via the advective water flux. We further implemented microbial decay and sorption to both soil and roots. Benchmarking the coupled 3D model with an analytical solution for a single root at steady state flow conditions showed a good agreement. Using this new approach we could derive global uptake parameters in silico and compare the simulation results to data from hydroponic experiments. The detailed modelling approach enables tracking solutes in time, space and phase within the soil and root system. This novel simulation tool can be used to investigate the influence of soil properties, root system architectures, solute properties, meteorological conditions as well as plant management strategies on plant solute uptake to gain a deeper understanding of solute uptake and transport parameters

Ultrashort pulse laser cutting of glass by controlled fracture propagation

International audienceLaser induced controlled fracture propagation has great potential in cutting brittle materials such as glass or sapphire. In this paper we demonstrate that the use of ultrashort pulse laser sources may be advantageous since it allows to overcome several restrictions of the convenient method

KEYLINK: Towards a more integrative soil representation for inclusion in ecosystem scale models - II: Model description, implementation and testing

New knowledge on soil structure highlights its importance for hydrology and soil organic matter (SOM) stabilization, which however remains neglected in many wide used models. We present here a new model, KEYLINK, in which soil structure is integrated with the existing concepts on SOM pools, and elements from food web models, that is, those from direct trophic interactions among soil organisms. KEYLINK is, therefore, an attempt to integrate soil functional diversity and food webs in predictions of soil carbon (C) and soil water balances. We present a selection of equations that can be used for most models as well as basic parameter intervals, for example, key pools, functional groups' biomasses and growth rates. Parameter distributions can be determined with Bayesian calibration, and here an example is presented for food web growth rate parameters for a pine forest in Belgium. We show how these added equations can improve the functioning of the model in describing known phenomena. For this, five test cases are given as simulation examples: changing the input litter quality (recalcitrance and carbon to nitrogen ratio), excluding predators, increasing pH and changing initial soil porosity. These results overall show how KEYLINK is able to simulate the known effects of these parameters and can simulate the linked effects of biopore formation, hydrology and aggregation on soil functioning. Furthermore, the results show an important trophic cascade effect of predation on the complete C cycle with repercussions on the soil structure as ecosystem engineers are predated, and on SOM turnover when predation on fungivore and bacterivore populations are reduced. In summary, KEYLINK shows how soil functional diversity and trophic organization and their role in C and water cycling in soils should be considered in order to improve our predictions on C sequestration and C emissions from soils. © 2021 PeerJ Inc.. All rights reserved.The following grant information was disclosed by the authors: COST (European Cooperation in Science and Technology): FP1305 (BioLink) and ES1406 (KEYSOM). Short Term Scientific Mission (STSM) programs. Spanish Ministry of Science, Innovation and Universities. Spanish Ministry of Economy and Competitiveness (MINECO): IBERYCA (CGL2017-84723-P). BC3 María de Maeztu Excellence Accreditation: MDM-2017-0714. Basque Government: BERC 2018-2021. This article is based upon work from COST Actions FP1305 (BioLink) and ES1406 (KEYSOM), supported by COST (European Cooperation in Science and Technology), and their Short Term Scientific Mission (STSM) programs. Omar Flores’ work was funded by FPU PhD grant program of the Spanish Ministry of Science, Innovation and Universities. Jorge Curiel Yuste received funding from the Spanish Ministry of Economy and Competitiveness (MINECO) under projects IBERYCA (CGL2017-84723-P) and the BC3 María de Maeztu excellence accreditation (MDM-2017-0714). Jorge Curiel Yuste also received funding from the Basque Government through the BERC 2018-2021 program. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

Body Wall Force Sensor for Simulated Minimally Invasive Surgery: Application to Fetal Surgery

Surgical interventions are increasingly executed minimal invasively. Surgeons insert instruments through tiny incisions in the body and pivot slender instruments to treat organs or tissue below the surface. While a blessing for patients, surgeons need to pay extra attention to overcome the fulcrum effect, reduced haptic feedback and deal with lost hand-eye coordination. The mental load makes it difficult to pay sufficient attention to the forces that are exerted on the body wall. In delicate procedures such as fetal surgery, this might be problematic as irreparable damage could cause premature delivery. As a first attempt to quantify the interaction forces applied on the patient's body wall, a novel 6 degrees of freedom force sensor was developed for an ex-vivo set up. The performance of the sensor was characterised. User experiments were conducted by 3 clinicians on a set up simulating a fetal surgical intervention. During these simulated interventions, the interaction forces were recorded and analysed when a normal instrument was employed. These results were compared with a session where a flexible instrument under haptic guidance was used. The conducted experiments resulted in interesting insights in the interaction forces and stresses that develop during such difficult surgical intervention. The results also implicated that haptic guidance schemes and the use of flexible instruments rather than rigid ones could have a significant impact on the stresses that occur at the body wall

European HYdropedological Data Inventory (EU-HYDI)

There is a common need for reliable hydropedological information in Europe. In the last decades research institutes, universities and government agencies have developed local, regional and national datasets containing soil physical, chemical, hydrological and taxonomic information often combined with land use and landform data. A hydrological database for western European soils was also created in the mid-1990s. However, a comprehensive European hydropedological database, with possible additional information on chemical parameters and land use is still missing. A comprehensive joint European hydropedological inventory can serve multiple purposes, including scientific research, modelling and application of models on different geographical scales. The objective of the joint effort of the participants is to establish the European Hydropedological Data Inventory (EU-HYDI). This database holds data from European soils focusing on soil physical, chemical and hydrological properties. It also contains information on geographical location, soil classification and land use/cover at the time of sampling. It was assembled with the aim of encompassing the soil variability in Europe. It contains data from 18 countries with contributions from 29 institutions. This report presents an overview of the database, details the individual contributed datasets and explains the quality assurance and harmonization process that lead to the final database

A new model for root growth in soil with macropores

Abstract: Background and aimsThe use of standard dynamic root architecture models to simulate root growth in soil containing macropores failed to reproduce experimentally observed root growth patterns. We thus developed a new, more mechanistic model approach for the simulation of root growth in structured soil. Methods: In our alternative modelling approach, we distinguish between, firstly, the driving force for root growth, which is determined by the orientation of the previous root segment and the influence of gravitropism and, secondly, soil mechanical resistance to root growth. The latter is expressed by its inverse, soil mechanical conductance, and treated similarly to hydraulic conductivity in Darcy’s law. At the presence of macropores, soil mechanical conductance is anisotropic, which leads to a difference between the direction of the driving force and the direction of the root tip movement. Results: The model was tested using data from the literature, at pot scale, at macropore scale, and in a series of simulations where sensitivity to gravity and macropore orientation was evaluated. Conclusions: Qualitative and quantitative comparisons between simulated and experimentally observed root systems showed good agreement, suggesting that the drawn analogy between soil water flow and root growth is a useful one