Delayed Manifestation of Transurethral Syndrome as a Complication of Transurethral Prostatic Resection

Metabolic encephalopathy as a part of ‘transurethral syndrome’ is an immediate complication following transurethral resection of prostate. It occurs during or few hours after the surgery. However, delayed manifestation of this complication is rare. It is also possible that pretreatment with diuretics can exaggerate this problem by predisposing the patient to electrolyte abnormalities. Here we present a report of such a patient who manifested with neurological complications six days after the prostate surger

Length-independent DNA packing into nanopore zero-mode waveguides for low-input DNA sequencing

Compared with conventional methods, single-molecule real-time (SMRT) DNA sequencing exhibits longer read lengths than conventional methods, less GC bias, and the ability to read DNA base modifications. However, reading DNA sequence from sub-nanogram quantities is impractical owing to inefficient delivery of DNA molecules into the confines of zero-mode waveguides-zeptolitre optical cavities in which DNA sequencing proceeds. Here, we show that the efficiency of voltage-induced DNA loading into waveguides equipped with nanopores at their floors is five orders of magnitude greater than existing methods. In addition, we find that DNA loading is nearly length-independent, unlike diffusive loading, which is biased towards shorter fragments. We demonstrate here loading and proof-of-principle four-colour sequence readout of a polymerase-bound 20,000-base-pair-long DNA template within seconds from a sub-nanogram input quantity, a step towards low-input DNA sequencing and mammalian epigenomic mapping of native DNA samples.R01 HG009186 - NHGRI NIH HHS; R21 HG006873 - NHGRI NIH HHSAccepted manuscrip

Design and evaluation of Moringa oleifera loaded transferosome vesicles: In vitro characterization

Moringa oleifera  herb is widely found in western ghat. The anticancer potential especially against breast cancer is proved by many scientific investigators. However poor skin permeability of active constituents limits the therapeutic use of this herbal active. Transfersomes are modified liposomes with improve skin permeation ability. Thus, extract loaded transfersomes were formulated to improve skin permeation of extract. The transfersomes are phospholipid based vesicles with edge activators. The edge activators increase skin permeation of transfersomes. The extract loaded transfersomes were fabricated using thin film hydration and assessed for vesicle size, microscopic imaging and thermal behavior. The transfersomes showed acceptable vesicle size and zeta potential. Thus, formulated transfersomes could be promising alternative for skin permeation enhancement of herbal active

Synthesis and antimicrobial activity of 4-substituted thiazol-2-yl hydrazine derivatives of 1-(2,6-difluorobenzyl)-1H-1,2,3-triazole-4-carbaldehyde

The manuscript reports synthesis and antimicrobial activity of several novel heterocyclic compounds in which 1,4-disubstituted 1,2,3-triazole synthesized via click chemistry approach and 4-aryl (5a-h) and 4-piperazinyl amide (7a-e) or 4-aryl amide (8a-e) substituted thiazole rings, are bridged through hydrazine linkage. Structures of all the synthesized compounds have been elucidated using 1H and 13C NMR and mass spectral analysis. In vitro antimicrobial screening of the target compounds has been carried out against six bacterial species viz. E. coli, P. aeruginosa, B. subtilis, S. pyogenes, K. pneumoniae and S. aureus and four fungal species viz. C. albicans, T. viride, A. flavus and A. brasiliensis. The activity study revealed that many of the compounds possess moderate to good activity against the tested microorganisms. The active compounds have been further studied to determine the minimum inhibitory concentration (MIC)

Synthesis and antimicrobial activity of 4-substituted thiazol-2-yl hydrazine derivatives of 1-(2,6-difluorobenzyl)-1H-1,2,3-triazole-4-carbaldehyde

716-723The manuscript reports synthesis and antimicrobial activity of several novel heterocyclic compounds in which 1,4-disubstituted 1,2,3-triazole synthesized via click chemistry approach and 4-aryl (5a-h) and 4-piperazinyl amide (7a-e) or 4-aryl amide (8a-e) substituted thiazole rings, are bridged through hydrazine linkage. Structures of all the synthesized compounds have been elucidated using 1H and 13C NMR and mass spectral analysis. In vitro antimicrobial screening of the target compounds has been carried out against six bacterial species viz. E. coli, P. aeruginosa, B. subtilis, S. pyogenes, K. pneumoniae and S. aureus and four fungal species viz. C. albicans, T. viride, A. flavus and A. brasiliensis. The activity study revealed that many of the compounds possess moderate to good activity against the tested microorganisms. The active compounds have been further studied to determine the minimum inhibitory concentration (MIC)

Data-driven discovery of stochastic dynamical equations of collective motion

Coarse-grained descriptions of collective motion of flocking systems are often derived for the macroscopic or the thermodynamic limit. However, many real flocks are small sized (10 to 100 individuals), called the mesoscopic scales, where stochasticity arising from the finite flock sizes is important. Developing mesoscopic scale equations, typically in the form of stochastic differential equations, can be challenging even for the simplest of the collective motion models. Here, we take a novel data-driven equation learning approach to construct the stochastic mesoscopic descriptions of a simple self-propelled particle (SPP) model of collective motion. In our SPP model, a focal individual can interact with k randomly chosen neighbours within an interaction radius. We consider k = 1 (called stochastic pairwise interactions), k = 2 (stochastic ternary interactions), and k equalling all available neighbours within the interaction radius (equivalent to Vicsek-like local averaging). The data-driven mesoscopic equations reveal that the stochastic pairwise interaction model produces a novel form of collective motion driven by a multiplicative noise term (hence termed, noise-induced flocking). In contrast, for higher order interactions (k > 1), including Vicsek-like averaging interactions, yield collective motion driven primarily by the deterministic forces. We find that the relation between the parameters of the mesoscopic equations describing the dynamics and the population size are sensitive to the density and to the interaction radius, exhibiting deviations from mean-field theoretical expectations. We provide semi-analytic arguments potentially explaining these observed deviations. In summary, our study emphasizes the importance of mesoscopic descriptions of flocking systems and demonstrates the potential of the data-driven equation discovery methods for complex systems studies

A Software Development Lifecycle Case Study on: Diet Recommendation System based on User Activities

This paper focuses on the methods of software engineering which can be helpful to various people working on huge projects with teams. This paper considers diet application as a case study. The main aim of the proposed system (diet application) is to give its users a healthy and balanced diet. The application is made in Flutter to ensure it reaches most of the audience and maximum people can receive its benefits. This paper is mostly based on the process used to create the application and all the views, processes, and architecture of the same. Some of the methods which are mentioned in the paper are the implementation of product backlog for the proposed system in association with a planning poker activity. The paper also has various Unified Modelling Language (UML) views in order to explain the design, implementation, use case and deployment of the proposed system

The prognostic and predictive value of homologous recombination deficiency status in patients with advanced stage epithelial ovarian carcinoma after first-line platinum-based chemotherapy

ObjectiveHomologous recombination (HR) comprises series of interrelated pathways that repair double-stranded DNA breaks and inter-strand crosslinks. It provides support for DNA replication to recover stalled or broken replication forks. Compared with homologous recombination proficiency (HRP), cancers with homologous recombination deficiency (HRD) are more likely to undergo cell death when treated with DNA-damaging agents, such as platinum agents, and have better disease control.MethodsPatients diagnosed with stage III/IV ovarian cancer, early stages with recurrence, who received adjuvant chemotherapy after debulking surgery, and who also had known HR status were eligible.ResultsForty-four patients were included, with 21 in the HRD group (including 8 with germline mutations) and 23 in the HRP group. The HRD group was composed predominantly of serous carcinoma (95.2%), while mucinous (n=3) and clear cell (n=1) cases were all found in the HRP group. Stage III/IV disease was 66.7% and 91.3% in HRD and HRP groups, respectively (p=0.064). Patients who were optimally debulked to no residual disease was 90.0% and 72.7% (p=0.243), respectively. Late line use of PARP inhibitors was 33.3% and 17.4% (p=0.303). Median PFS was 22.5 months (95% CI, 18.5 - 66.6) and 21.5 months (95% CI, 18.3-39.5) (p=0.49) in HRD and HRP respectively. Median platinum free interval (PFI) was 15.8 months (95% CI 12.4-60.4) and 15.9 months (95% CI 8.3-34.1) (p=0.24), respectively. Median OS was 88.2 months (95% CI 71.2-NA) and 49.7 months (95% CI 35.1-NA) (p=0.21). The PFS of the patients with germline BRCA mutations (n=5) was 54.3 months (95% CI 23.1-NA) and 21.5 months (95% CI 18.3-39.5) in the HRP group (p=0.095); the PFI difference was 47.7 months (95% CI 17.6-NA) in the BRCA mutation group, and 15.9 months (95% CI 12.4-60.4) in HRP, showing statistical significance (p=0.039); while the median OS was NA and 49.7 months (95% CI 35.1-NA) respectively (p=0.051). When adding two additional patients with somatic BRCA mutations to the germline BRCA mutation carriers, the median OS is NA (95% CI 73, NA) versus 49.7 months (95% CI 35.1, NA) for HRP (p=0.045).ConclusionsHRD status was not associated with longer PFS or PFI in advanced ovarian cancer who received first line adjuvant platinum-based chemotherapy. Its role as a prognostic marker for overall survival is suggested, particularly in the subgroup with germline and somatic BRCA mutations

Genomic and protein expression analysis reveals flap endonuclease 1 (FEN1) as a key biomarker in breast and ovarian cancer

FEN1 has key roles in Okazaki fragment maturation during replication, long patch base excision repair, rescue of stalled replication forks, maintenance of telomere stability and apoptosis. FEN1 may be dysregulated in breast and ovarian cancers and have clinicopathological significance in patients. We comprehensively investigated FEN1 mRNA expression in multiple cohorts of breast cancer [training set (128), test set (249), external validation (1952)]. FEN1 protein expression was evaluated in 568 oestrogen receptor (ER) negative breast cancers, 894 ER positive breast cancers and 156 ovarian epithelial cancers. FEN1 mRNA overexpression was highly significantly associated with high grade (p= 4.89 x 10 - 57) , high mitotic index (p= 5.25 x 10 - 28), pleomorphism (p= 6.31 x 10-19), ER negative (p= 9.02 x 10-35 ), PR negative (p= 9.24 x 10-24 ), triple negative phenotype (p= 6.67 x 10-21) , PAM50.Her2 (p=5.19 x 10-13 ), PAM50.Basal (p=2.7 x 10-41), PAM50.LumB (p=1.56 x 10-26), integrative molecular cluster 1 (intClust.1) ( p=7.47 x 10-12), intClust.5 (p=4.05 x 10-12) and intClust. 10 (p=7.59 x 10-38 ) breast cancers. FEN1 mRNA overexpression is associated with poor breast cancer specific survival in univariate (p=4.4 x 10-16) and multivariate analysis (p=9.19 x 10-7). At the protein level, in ER positive tumours , FEN1 overexpression remains significantly linked to high grade, high mitotic index and pleomorphism (ps< 0.01). In ER negative tumours, high FEN1 is significantly associated with pleomorphism, tumour type, lymphovascular invasion, triple negative phenotype, EGFR and HER2 expression (ps<0.05). In ER positive as well as in ER negative tumours, FEN1 protein over expression is associated with poor survival in univariate and multivariate analysis (ps<0.01). In ovarian epithelial cancers , similarly, FEN1 overexpression is associated with high grade, high stage and poor survival (ps<0.05). We conclude that FEN1 is a promising biomarker in breast and ovarian epithelial cancer

Archaeoparasitological Strategy Based on the Microscopic Examinations of Prehistoric Samples and the Recent Report on the Difference in the Prevalence of Soil Transmitted Helminthic Infections in the Indian Subcontinent

Archaeoparasitology is a study to acquire data concerning the parasite infection of ancient people through the examination of the specimens obtained in the excavation sites. Although this research has achieved many successes worldwide, there has been few noteworthy reports from South Asia countries. In 2011 to 2016, we thus conducted parasite examinations on Indian archaeological specimens (n = 247) collected at excavation sites of Mature Harappan period (4600–3900 BP) and their contemporary rural Chalcolithic sites. To derive effective strategy of archaeoparasitological works in Indian Subcontinent, our data were analyzed together with previous clinical report on the soil transmitted helminth infection in the Indian Subcontinent. We propose that future paleoparasitological studies in India should be conducted more intensely on ancient specimens from the states of Assam, Bihar, Jammu and Kashmir, Tamil Nadu, Andhra Pradesh and West Bengal etc